Reviewed, UniProtKB/Swiss-Prot Q8NSH9 (PRPD1_CORGL)

Names and origin

Protein names

Recommended name:
    2-methylcitrate dehydratase 1
    EC=4.2.1.79

Gene names

Name:	prpD1
Ordered Locus Names:	Cgl0694, cg0796

Organism

Corynebacterium glutamicum (Brevibacterium flavum) [Complete proteome] [HAMAP]

Taxonomic identifier

1718 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Corynebacteriaceae › Corynebacterium

Protein attributes

Sequence length	498 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Catalyzes the dehydration of 2-methylcitrate to 2-methyl-cis-aconitate By similarity.
Catalytic activity	(2S,3S)-2-hydroxybutane-1,2,3-tricarboxylate = (Z)-but-2-ene-1,2,3-tricarboxylate + H2O.
Miscellaneous	The prpD1B1C1 operon seems not to be involved in propionate degradation.
Sequence similarities	Belongs to the prpD family.

Ontologies

Keywords
Molecular function	Lyase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	propionate catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	2-methylcitrate dehydratase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 498	498	2-methylcitrate dehydratase 1		PRO_0000215021

Sequences

	Sequence		Length	Mass (Da)
	Q8NSH9-1 [UniParc]. Last modified September 19, 2002. Version 1. Checksum: 626F96A36B9227C3	FASTA	498	55,013
	10 20 30 40 50 60 MRIHDVYTHL SADNFPKAEH LAWKFSELAT DPVEVTPDVS EMIINRIIDN AAVSAASVLR 70 80 90 100 110 120 RPVTVARQQA QSHPREKGGK VFGISGSYSP EWAAFANGVA VRELDFHDTF LAAEYSHPGD 130 140 150 160 170 180 NIPPLLAVAQ AQRSSGRDLI RGIATAYEVQ VELVRGICLH EHKIDHVAHL GPSAAAGLGT 190 200 210 220 230 240 LLHVDEETIY QAIGQALHTT TATRQSRKGE ISSWKAFAPA FAGKMAIEAM DRAMRGEGSP 250 260 270 280 290 300 APIWEGEDGV IAWLLSGKDH VYHVPLPEHG EPKLGILETY TKEHSAEYQS QAPIDLARRM 310 320 330 340 350 360 KPLVDAAGGT EHIAEIVLRT SHHTHYVIGT GANDPQKMDP QASRETLDHS IMYIFAVALQ 370 380 390 400 410 420 DGVWHHEFSY TRKRSTRPET VELWHKIRTV EDPEWTRRYH SDDPAKKAFG AKAVITMADG 430 440 450 460 470 480 TVIEDELAVA DAHPLGARPF ARENYIEKFR TLAQGIVIDS EQERFLHAVQ SLPDLDDLDQ 490 LNIEVDISNQ AATKAGLL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Identification of two prpDBC gene clusters in Corynebacterium glutamicum and their involvement in propionate degradation via the 2-methylcitrate cycle." Claes W.A., Puehler A., Kalinowski J. J. Bacteriol. 184:2728-2739(2002) [PubMed: 11976302] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025.
[2]	"Complete genomic sequence of Corynebacterium glutamicum ATCC 13032." Nakagawa S. Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025.
[3]	"The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins." Kalinowski J., Bathe B., Bartels D., Bischoff N., Bott M., Burkovski A., Dusch N., Eggeling L., Eikmanns B.J., Gaigalat L., Goesmann A., Hartmann M., Huthmacher K., Kraemer R., Linke B., McHardy A.C., Meyer F., Moeckel B. , Pfefferle W., Puehler A., Rey D.A., Rueckert C., Rupp O., Sahm H., Wendisch V.F., Wiegraebe I., Tauch A. J. Biotechnol. 104:5-25(2003) [PubMed: 12948626] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AF434798 Genomic DNA. Translation: AAM21500.1. BA000036 Genomic DNA. Translation: BAB98087.1. BX927150 Genomic DNA. Translation: CAF19399.1.
RefSeq	NP_599926.1. YP_224985.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	1018693. 3343519.
GenomeReviews	Gene locus Cgl0694 in contig BA000036_GR. Gene locus cg0796 in contig BX927147_GR.
KEGG	cgb:cg0796. cgl:NCgl0664.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q8NSH9.
OMA	SMWKAGA.
Enzyme and pathway databases
BioCyc	CGLU196627-1:CG0796-MON.
BRENDA	4.2.1.79. 812.
Family and domain databases
InterPro	IPR005656. MmgE_PrpD. [Graphical view]
PANTHER	PTHR16943. MmgE_PrpD. 1 hit.
Pfam	PF03972. MmgE_PrpD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

PRPD1_CORGL

Accession

Primary (citable) accession number: Q8NSH9

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 19, 2002
Last sequence update:	September 19, 2002
Last modified:	November 3, 2009
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)