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Q8NGT0

- O13C9_HUMAN

UniProt

Q8NGT0 - O13C9_HUMAN

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Protein
Olfactory receptor 13C9
Gene
OR13C9
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Odorant receptor Reviewed prediction.

GO - Molecular functioni

  1. G-protein coupled receptor activity Source: UniProtKB-KW
  2. olfactory receptor activity Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

G-protein coupled receptor, Receptor, Transducer

Keywords - Biological processi

Olfaction, Sensory transduction

Enzyme and pathway databases

ReactomeiREACT_15488. Olfactory Signaling Pathway.

Names & Taxonomyi

Protein namesi
Recommended name:
Olfactory receptor 13C9
Alternative name(s):
Olfactory receptor OR9-13
Gene namesi
Name:OR13C9
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 9

Organism-specific databases

HGNCiHGNC:15104. OR13C9.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 2525Extracellular Reviewed prediction
Add
BLAST
Transmembranei26 – 4621Helical; Name=1; Reviewed prediction
Add
BLAST
Topological domaini47 – 548Cytoplasmic Reviewed prediction
Transmembranei55 – 7521Helical; Name=2; Reviewed prediction
Add
BLAST
Topological domaini76 – 9924Extracellular Reviewed prediction
Add
BLAST
Transmembranei100 – 12021Helical; Name=3; Reviewed prediction
Add
BLAST
Topological domaini121 – 13919Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei140 – 16021Helical; Name=4; Reviewed prediction
Add
BLAST
Topological domaini161 – 19737Extracellular Reviewed prediction
Add
BLAST
Transmembranei198 – 21720Helical; Name=5; Reviewed prediction
Add
BLAST
Topological domaini218 – 23720Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei238 – 25821Helical; Name=6; Reviewed prediction
Add
BLAST
Topological domaini259 – 27719Extracellular Reviewed prediction
Add
BLAST
Transmembranei278 – 29821Helical; Name=7; Reviewed prediction
Add
BLAST
Topological domaini299 – 31820Cytoplasmic Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: Reactome
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA32039.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 318318Olfactory receptor 13C9
PRO_0000150736Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi5 – 51N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi97 ↔ 189 By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiQ8NGT0.
PRIDEiQ8NGT0.

Expressioni

Gene expression databases

CleanExiHS_OR13C9.
GenevestigatoriQ8NGT0.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000259362.

Structurei

3D structure databases

ProteinModelPortaliQ8NGT0.
SMRiQ8NGT0. Positions 29-310.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG42788.
HOGENOMiHOG000041362.
HOVERGENiHBG017625.
InParanoidiQ8NGT0.
KOiK04257.
OMAiLAVMKMA.
OrthoDBiEOG7GXPC0.
PhylomeDBiQ8NGT0.
TreeFamiTF352686.

Family and domain databases

Gene3Di1.20.1070.10. 1 hit.
InterProiIPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
IPR000725. Olfact_rcpt.
[Graphical view]
PRINTSiPR00237. GPCRRHODOPSN.
PR00245. OLFACTORYR.
PROSITEiPS00237. G_PROTEIN_RECEP_F1_1. 1 hit.
PS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8NGT0-1 [UniParc]FASTAAdd to Basket

« Hide

MEWENQTILV EFFLKGHSVH PRLELLFFVL IFIMYVVILL GNGTLILISI    50
LDPHLHTPMY FFLGNLSFLD ICYTTTSIPS TLVSFLSERK TISFSGCAVQ 100
MFLGLAMGTT ECVLLGMMAF DRYVAICNPL RYPIIMSKNA YVPMAVGSWF 150
AGIVNSAVQT TFVVQLPFCR KNVINHFSCE ILAVMKLACA DISGNEFLML 200
VATILFTLMP LLLIVISYSL IISSILKIHS SEGRSKAFST CSAHLTVVII 250
FYGTILFMYM KPKSKETLNS DDLDATDKII SMFYGVMTPM MNPLIYSLRN 300
KDVKEAVKHL PNRRFFSK 318
Length:318
Mass (Da):35,854
Last modified:October 1, 2002 - v1
Checksum:i318CA874691F8A7D
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti24 – 241E → D.
Corresponds to variant rs2900373 [ dbSNP | Ensembl ].
VAR_024136
Natural varianti91 – 911T → S.
Corresponds to variant rs993658 [ dbSNP | Ensembl ].
VAR_034308
Natural varianti197 – 1971F → L.
Corresponds to variant rs10761054 [ dbSNP | Ensembl ].
VAR_053301

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB065708 Genomic DNA. Translation: BAC05930.1.
AL359846 Genomic DNA. Translation: CAH73575.1.
CH471105 Genomic DNA. Translation: EAW58988.1.
BK004250 Genomic DNA. Translation: DAA04648.1.
CCDSiCCDS35093.1.
RefSeqiNP_001001956.1. NM_001001956.1.
UniGeneiHs.553682.

Genome annotation databases

EnsembliENST00000259362; ENSP00000259362; ENSG00000136839.
GeneIDi286362.
KEGGihsa:286362.
UCSCiuc011lvr.2. human.

Polymorphism databases

DMDMi38372767.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Web resourcesi

Human Olfactory Receptor Data Exploratorium (HORDE)

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB065708 Genomic DNA. Translation: BAC05930.1 .
AL359846 Genomic DNA. Translation: CAH73575.1 .
CH471105 Genomic DNA. Translation: EAW58988.1 .
BK004250 Genomic DNA. Translation: DAA04648.1 .
CCDSi CCDS35093.1.
RefSeqi NP_001001956.1. NM_001001956.1.
UniGenei Hs.553682.

3D structure databases

ProteinModelPortali Q8NGT0.
SMRi Q8NGT0. Positions 29-310.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 9606.ENSP00000259362.

Protein family/group databases

GPCRDBi Search...

Polymorphism databases

DMDMi 38372767.

Proteomic databases

PaxDbi Q8NGT0.
PRIDEi Q8NGT0.

Protocols and materials databases

DNASUi 286362.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000259362 ; ENSP00000259362 ; ENSG00000136839 .
GeneIDi 286362.
KEGGi hsa:286362.
UCSCi uc011lvr.2. human.

Organism-specific databases

CTDi 286362.
GeneCardsi GC09M107379.
HGNCi HGNC:15104. OR13C9.
neXtProti NX_Q8NGT0.
PharmGKBi PA32039.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG42788.
HOGENOMi HOG000041362.
HOVERGENi HBG017625.
InParanoidi Q8NGT0.
KOi K04257.
OMAi LAVMKMA.
OrthoDBi EOG7GXPC0.
PhylomeDBi Q8NGT0.
TreeFami TF352686.

Enzyme and pathway databases

Reactomei REACT_15488. Olfactory Signaling Pathway.

Miscellaneous databases

GeneWikii OR13C9.
GenomeRNAii 286362.
NextBioi 96172.
PROi Q8NGT0.

Gene expression databases

CleanExi HS_OR13C9.
Genevestigatori Q8NGT0.

Family and domain databases

Gene3Di 1.20.1070.10. 1 hit.
InterProi IPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
IPR000725. Olfact_rcpt.
[Graphical view ]
PRINTSi PR00237. GPCRRHODOPSN.
PR00245. OLFACTORYR.
PROSITEi PS00237. G_PROTEIN_RECEP_F1_1. 1 hit.
PS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome-wide discovery and analysis of human seven transmembrane helix receptor genes."
    Suwa M., Sato T., Okouchi I., Arita M., Futami K., Matsumoto S., Tsutsumi S., Aburatani H., Asai K., Akiyama Y.
    Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "DNA sequence and analysis of human chromosome 9."
    Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S., Babbage A.K., Babbage S., Bagguley C.L.
    , Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beasley H., Beasley O., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burford D., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Chen Y., Clarke G., Clark S.Y., Clee C.M., Clegg S., Collier R.E., Corby N., Crosier M., Cummings A.T., Davies J., Dhami P., Dunn M., Dutta I., Dyer L.W., Earthrowl M.E., Faulkner L., Fleming C.J., Frankish A., Frankland J.A., French L., Fricker D.G., Garner P., Garnett J., Ghori J., Gilbert J.G.R., Glison C., Grafham D.V., Gribble S., Griffiths C., Griffiths-Jones S., Grocock R., Guy J., Hall R.E., Hammond S., Harley J.L., Harrison E.S.I., Hart E.A., Heath P.D., Henderson C.D., Hopkins B.L., Howard P.J., Howden P.J., Huckle E., Johnson C., Johnson D., Joy A.A., Kay M., Keenan S., Kershaw J.K., Kimberley A.M., King A., Knights A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C., Lloyd D.M., Lovell J., Martin S., Mashreghi-Mohammadi M., Matthews L., McLaren S., McLay K.E., McMurray A., Milne S., Nickerson T., Nisbett J., Nordsiek G., Pearce A.V., Peck A.I., Porter K.M., Pandian R., Pelan S., Phillimore B., Povey S., Ramsey Y., Rand V., Scharfe M., Sehra H.K., Shownkeen R., Sims S.K., Skuce C.D., Smith M., Steward C.A., Swarbreck D., Sycamore N., Tester J., Thorpe A., Tracey A., Tromans A., Thomas D.W., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Williams S.A., Wilming L., Wray P.W., Young L., Ashurst J.L., Coulson A., Blocker H., Durbin R.M., Sulston J.E., Hubbard T., Jackson M.J., Bentley D.R., Beck S., Rogers J., Dunham I.
    Nature 429:369-374(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. Cited for: IDENTIFICATION.
  5. Erratum
    Malnic B., Godfrey P.A., Buck L.B.
    Proc. Natl. Acad. Sci. U.S.A. 101:7205-7205(2004)

Entry informationi

Entry nameiO13C9_HUMAN
AccessioniPrimary (citable) accession number: Q8NGT0
Secondary accession number(s): Q6IFL2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 10, 2003
Last sequence update: October 1, 2002
Last modified: September 3, 2014
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. 7-transmembrane G-linked receptors
    List of 7-transmembrane G-linked receptor entries
  2. Human chromosome 9
    Human chromosome 9: entries, gene names and cross-references to MIM
  3. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  4. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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