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Q8NGF0

- O52B6_HUMAN

UniProt

Q8NGF0 - O52B6_HUMAN

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Protein
Olfactory receptor 52B6
Gene
OR52B6
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Odorant receptor Reviewed prediction.

GO - Molecular functioni

  1. G-protein coupled receptor activity Source: UniProtKB-KW
  2. olfactory receptor activity Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

G-protein coupled receptor, Receptor, Transducer

Keywords - Biological processi

Olfaction, Sensory transduction

Enzyme and pathway databases

ReactomeiREACT_15488. Olfactory Signaling Pathway.

Names & Taxonomyi

Protein namesi
Recommended name:
Olfactory receptor 52B6
Alternative name(s):
Olfactory receptor OR11-47
Gene namesi
Name:OR52B6
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 11

Organism-specific databases

HGNCiHGNC:15211. OR52B6.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 4545Extracellular Reviewed prediction
Add
BLAST
Transmembranei46 – 6621Helical; Name=1; Reviewed prediction
Add
BLAST
Topological domaini67 – 748Cytoplasmic Reviewed prediction
Transmembranei75 – 9521Helical; Name=2; Reviewed prediction
Add
BLAST
Topological domaini96 – 11924Extracellular Reviewed prediction
Add
BLAST
Transmembranei120 – 13920Helical; Name=3; Reviewed prediction
Add
BLAST
Topological domaini140 – 15819Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei159 – 17921Helical; Name=4; Reviewed prediction
Add
BLAST
Topological domaini180 – 21536Extracellular Reviewed prediction
Add
BLAST
Transmembranei216 – 23621Helical; Name=5; Reviewed prediction
Add
BLAST
Topological domaini237 – 25620Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei257 – 27721Helical; Name=6; Reviewed prediction
Add
BLAST
Topological domaini278 – 29316Extracellular Reviewed prediction
Add
BLAST
Transmembranei294 – 31421Helical; Name=7; Reviewed prediction
Add
BLAST
Topological domaini315 – 33521Cytoplasmic Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: Reactome
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA32400.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 335335Olfactory receptor 52B6
PRO_0000150769Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi23 – 231N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi117 ↔ 208 By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiQ8NGF0.
PRIDEiQ8NGF0.

PTM databases

PhosphoSiteiQ8NGF0.

Expressioni

Gene expression databases

CleanExiHS_OR52B6.
GenevestigatoriQ8NGF0.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000341581.

Structurei

3D structure databases

ProteinModelPortaliQ8NGF0.
SMRiQ8NGF0. Positions 39-177.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG147576.
HOGENOMiHOG000041363.
HOVERGENiHBG017625.
InParanoidiQ8NGF0.
KOiK04257.
OMAiKQMFSNL.
OrthoDBiEOG754HPV.
PhylomeDBiQ8NGF0.
TreeFamiTF343679.

Family and domain databases

Gene3Di1.20.1070.10. 1 hit.
InterProiIPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
IPR000725. Olfact_rcpt.
[Graphical view]
PRINTSiPR00237. GPCRRHODOPSN.
PR00245. OLFACTORYR.
PROSITEiPS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8NGF0-1 [UniParc]FASTAAdd to Basket

« Hide

MAQVRALHKI MALFSANSIG AMNNSDTRIA GCFLTGIPGL EQLHIWLSIP    50
FCIMYITALE GNGILICVIL SQAILHEPMY IFLSMLASAD VLLSTTTMPK 100
ALANLWLGYS LISFDGCLTQ MFFIHFLFIH SAVLLAMAFD RYVAICSPLR 150
YVTILTSKVI GKIVTAALSH SFIIMFPSIF LLEHLHYCQI NIIAHTFCEH 200
MGIAHLSCSD ISINVWYGLA AALLSTGLDI MLITVSYIHI LQAVFRLLSQ 250
DARSKALSTC GSHICVILLF YVPALFSVFA YRFGGRSVPC YVHILLASLY 300
VVIPPMLNPV IYGVRTKPIL EGAKQMFSNL AKGSK 335
Length:335
Mass (Da):36,963
Last modified:December 16, 2008 - v3
Checksum:iF1F3458611158252
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti57 – 571T → A.
Corresponds to variant rs1077126 [ dbSNP | Ensembl ].
VAR_048077
Natural varianti111 – 1111L → H.
Corresponds to variant rs2341432 [ dbSNP | Ensembl ].
VAR_048078
Natural varianti167 – 1671A → T.
Corresponds to variant rs2341433 [ dbSNP | Ensembl ].
VAR_048079
Natural varianti170 – 1701H → R.
Corresponds to variant rs2341434 [ dbSNP | Ensembl ].
VAR_048080
Natural varianti288 – 2881V → I.
Corresponds to variant rs10769086 [ dbSNP | Ensembl ].
VAR_048081

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB065858 Genomic DNA. Translation: BAC06076.1.
AC015691 Genomic DNA. No translation available.
BK004275 Genomic DNA. Translation: DAA04673.1.
CCDSiCCDS41611.1.
RefSeqiNP_001005162.2. NM_001005162.2.
UniGeneiHs.553704.

Genome annotation databases

EnsembliENST00000345043; ENSP00000341581; ENSG00000187747.
GeneIDi340980.
KEGGihsa:340980.
UCSCiuc010qzi.2. human.

Polymorphism databases

DMDMi218512128.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Web resourcesi

Human Olfactory Receptor Data Exploratorium (HORDE)

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB065858 Genomic DNA. Translation: BAC06076.1 .
AC015691 Genomic DNA. No translation available.
BK004275 Genomic DNA. Translation: DAA04673.1 .
CCDSi CCDS41611.1.
RefSeqi NP_001005162.2. NM_001005162.2.
UniGenei Hs.553704.

3D structure databases

ProteinModelPortali Q8NGF0.
SMRi Q8NGF0. Positions 39-177.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 9606.ENSP00000341581.

Protein family/group databases

GPCRDBi Search...

PTM databases

PhosphoSitei Q8NGF0.

Polymorphism databases

DMDMi 218512128.

Proteomic databases

PaxDbi Q8NGF0.
PRIDEi Q8NGF0.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000345043 ; ENSP00000341581 ; ENSG00000187747 .
GeneIDi 340980.
KEGGi hsa:340980.
UCSCi uc010qzi.2. human.

Organism-specific databases

CTDi 340980.
GeneCardsi GC11P005604.
HGNCi HGNC:15211. OR52B6.
neXtProti NX_Q8NGF0.
PharmGKBi PA32400.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG147576.
HOGENOMi HOG000041363.
HOVERGENi HBG017625.
InParanoidi Q8NGF0.
KOi K04257.
OMAi KQMFSNL.
OrthoDBi EOG754HPV.
PhylomeDBi Q8NGF0.
TreeFami TF343679.

Enzyme and pathway databases

Reactomei REACT_15488. Olfactory Signaling Pathway.

Miscellaneous databases

GeneWikii OR52B6.
GenomeRNAii 340980.
NextBioi 98050.
PROi Q8NGF0.

Gene expression databases

CleanExi HS_OR52B6.
Genevestigatori Q8NGF0.

Family and domain databases

Gene3Di 1.20.1070.10. 1 hit.
InterProi IPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
IPR000725. Olfact_rcpt.
[Graphical view ]
PRINTSi PR00237. GPCRRHODOPSN.
PR00245. OLFACTORYR.
PROSITEi PS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome-wide discovery and analysis of human seven transmembrane helix receptor genes."
    Suwa M., Sato T., Okouchi I., Arita M., Futami K., Matsumoto S., Tsutsumi S., Aburatani H., Asai K., Akiyama Y.
    Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: IDENTIFICATION.
  4. Erratum
    Malnic B., Godfrey P.A., Buck L.B.
    Proc. Natl. Acad. Sci. U.S.A. 101:7205-7205(2004)

Entry informationi

Entry nameiO52B6_HUMAN
AccessioniPrimary (citable) accession number: Q8NGF0
Secondary accession number(s): Q6IFI7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 10, 2003
Last sequence update: December 16, 2008
Last modified: September 3, 2014
This is version 100 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

It is uncertain whether Met-1 or Met-22 is the initiator.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. 7-transmembrane G-linked receptors
    List of 7-transmembrane G-linked receptor entries
  2. Human chromosome 11
    Human chromosome 11: entries, gene names and cross-references to MIM
  3. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  4. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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