Reviewed,
UniProtKB/Swiss-Prot Q8NE71 (ABCF1_HUMAN)
Last modified
November 24, 2009.
Version 72.
History...
Clusters with 100%,
90%,
50% identity |
Documents (5) |
Third-party data |
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Names and origin
| Protein names | Recommended name: ATP-binding cassette sub-family F member 1 Alternative name(s): ATP-binding cassette 50 TNF-alpha-stimulated ABC protein | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Complete proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 845 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | May function in mRNA translation By similarity. |
| Subunit structure | Interacts with eukaryotic initiation factor 2 (eIF2). Associates with the ribosomes By similarity. |
| Tissue specificity | Ubiquitous. |
| Induction | By TNF (in cultured synoviocytes). |
| Post-translational modification | Phosphorylated upon DNA damage, probably by ATM or ATR. Ref.7 Ref.8 Ref.9 Ref.10 Ref.11 Ref.13 Ref.14 Ref.15 Ref.16 Ref.17 |
| Sequence similarities | Belongs to the ABC transporter superfamily. ABCF family. EF3 subfamily. Contains 2 ABC transporter domains. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat |
| Ligand | ATP-binding Nucleotide-binding |
| PTM | Isopeptide bond Phosphoprotein Ubl conjugation |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | inflammatory response Ref.1 Traceable author statement. Source: ProtInc translation Ref.1Traceable author statement. Source: ProtInc |
| Molecular function | ATP binding Ref.1 Traceable author statement. Source: ProtInc ATPase activity, coupled to transmembrane movement of substances Ref.1Traceable author statement. Source: ProtInc translation factor activity, nucleic acid binding Ref.1Traceable author statement. Source: ProtInc |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q8NE71-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q8NE71-2) The sequence of this isoform differs from the canonical sequence as follows: 226-263: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 845 | 845 | ATP-binding cassette sub-family F member 1 | PRO_0000093318 | |||||
Regions | |||||||||
| Domain | 304 – 548 | 245 | ABC transporter 1 | ||||||
| Domain | 625 – 840 | 216 | ABC transporter 2 | ||||||
| Nucleotide binding | 336 – 343 | 8 | ATP 1 By similarity | ||||||
| Nucleotide binding | 658 – 665 | 8 | ATP 2 By similarity | ||||||
| Compositional bias | 141 – 243 | 103 | Glu-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 22 | 1 | Phosphoserine | ||||||
| Modified residue | 24 | 1 | Phosphoserine Ref.16 | ||||||
| Modified residue | 105 | 1 | Phosphoserine Ref.8 Ref.9 Ref.16 | ||||||
| Modified residue | 108 | 1 | Phosphothreonine Ref.7 Ref.8 Ref.9 Ref.14 Ref.16 | ||||||
| Modified residue | 109 | 1 | Phosphoserine Ref.7 Ref.8 Ref.9 Ref.14 Ref.15 Ref.16 Ref.17 | ||||||
| Modified residue | 140 | 1 | Phosphoserine Ref.9 Ref.11 Ref.16 | ||||||
| Modified residue | 166 | 1 | Phosphoserine Ref.16 | ||||||
| Modified residue | 228 | 1 | Phosphoserine Ref.9 Ref.10 Ref.11 Ref.16 Ref.17 | ||||||
| Modified residue | 595 | 1 | Phosphoserine Ref.13 | ||||||
| Cross-link | 573 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) Ref.12 | |||||||
| Cross-link | 582 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) Ref.12 | |||||||
Natural variations | |||||||||
| Alternative sequence | 226 – 263 | 38 | Missing in isoform 2. | VSP_012078 | |||||
| Natural variant | 198 | 1 | N → D: dbSNP rs6902544. | VAR_048136 | |||||
Experimental info | |||||||||
| Sequence conflict | 166 | 1 | S → P in AAH34488. Ref.5 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "ABC50, a novel human ATP-binding cassette protein found in tumor necrosis factor-alpha-stimulated synoviocytes." Richard M., Drouin R., Beaulieu A.D. Genomics 53:137-145(1998) [PubMed: 9790762] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). |
| [2] | "Homo sapiens 2,229,817bp genomic DNA of 6p21.3 HLA class I region." Shiina S., Tamiya G., Oka A., Inoko H. Submitted (SEP-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | "Genome diversity in HLA: a new strategy for detection of genetic polymorphisms in expressed genes within the HLA class III and class I regions." Shiina T., Ota M., Katsuyama Y., Hashimoto N., Inoko H. Submitted (JUL-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The DNA sequence and analysis of human chromosome 6." Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D. Beck S.Nature 425:805-811(2003) [PubMed: 14574404] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Testis. |
| [6] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 160-845 (ISOFORM 1). Tissue: Melanoma. |
| [7] | "Large-scale characterization of HeLa cell nuclear phosphoproteins." Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-108 AND SER-109, MASS SPECTROMETRY. Tissue: Epithelium. |
| [8] | "Global phosphoproteome of HT-29 human colon adenocarcinoma cells." Kim J.-E., Tannenbaum S.R., White F.M. J. Proteome Res. 4:1339-1346(2005) [PubMed: 16083285] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-105; THR-108 AND SER-109, MASS SPECTROMETRY. |
| [9] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-105; THR-108; SER-109; SER-140 AND SER-228, MASS SPECTROMETRY. Tissue: Epithelium. |
| [10] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed: 16964243] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-228, MASS SPECTROMETRY. Tissue: Epithelium. |
| [11] | "Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry." Molina H., Horn D.M., Tang N., Mathivanan S., Pandey A. Proc. Natl. Acad. Sci. U.S.A. 104:2199-2204(2007) [PubMed: 17287340] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-140 AND SER-228, MASS SPECTROMETRY. |
| [12] | "Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry." Denis N.J., Vasilescu J., Lambert J.-P., Smith J.C., Figeys D. Proteomics 7:868-874(2007) [PubMed: 17370265] [Abstract] Cited for: UBIQUITINATION [LARGE SCALE ANALYSIS] AT LYS-573 AND LYS-582, MASS SPECTROMETRY. |
| [13] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed: 17525332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-595, MASS SPECTROMETRY. |
| [14] | "Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column." Imami K., Sugiyama N., Kyono Y., Tomita M., Ishihama Y. Anal. Sci. 24:161-166(2008) [PubMed: 18187866] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-108 AND SER-109, MASS SPECTROMETRY. |
| [15] | "Phosphoproteome of resting human platelets." Zahedi R.P., Lewandrowski U., Wiesner J., Wortelkamp S., Moebius J., Schuetz C., Walter U., Gambaryan S., Sickmann A. J. Proteome Res. 7:526-534(2008) [PubMed: 18088087] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-109, MASS SPECTROMETRY. Tissue: Platelet. |
| [16] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-24; SER-105; THR-108; SER-109; SER-140; SER-166 AND SER-228, MASS SPECTROMETRY. |
| [17] | "Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography." Han G., Ye M., Zhou H., Jiang X., Feng S., Jiang X., Tian R., Wan D., Zou H., Gu J. Proteomics 8:1346-1361(2008) [PubMed: 18318008] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-109 AND SER-228, MASS SPECTROMETRY. Tissue: Liver. |
| [18] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| [19] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-22; SER-24; THR-108; SER-109 AND SER-140, MASS SPECTROMETRY. |
| [20] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-108; SER-109; SER-140; SER-166 AND SER-228, MASS SPECTROMETRY. Tissue: T-cell. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| AF027302 mRNA. Translation: AAC70891.1. BA000025 Genomic DNA. Translation: BAB63325.1. AB088096 Genomic DNA. Translation: BAC54928.1. AL662800 Genomic DNA. Translation: CAI18158.1. AL662800 Genomic DNA. Translation: CAI18159.1. AL662825 Genomic DNA. Translation: CAI17836.1. AL662825 Genomic DNA. Translation: CAI17837.1. BX000357 Genomic DNA. Translation: CAI18562.1. BX000357 Genomic DNA. Translation: CAI18563.1. BC034488 mRNA. Translation: AAH34488.1. AL832430 mRNA. Translation: CAH10648.1. | |
| IPI | IPI00013495. IPI00873899. |
| RefSeq | NP_001020262.1. NP_001081.1. |
| UniGene | Hs.655285 |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q8NE71. 4 interactions. |
| STRING | Q8NE71. |
PTM databases | |
| PhosphoSite | Q8NE71. |
Proteomic databases | |
| PRIDE | Q8NE71. |
Genome annotation databases | |
| Ensembl | ENST00000326195; ENSP00000313603; ENSG00000204574; Homo sapiens. [Genome view] ENST00000383588; ENSP00000373082; ENSG00000206490; Homo sapiens. [Genome view] ENST00000419893; ENSP00000389065; ENSG00000232169; Homo sapiens. [Genome view] ENST00000423247; ENSP00000411327; ENSG00000225989; Homo sapiens. [Genome view] ENST00000426219; ENSP00000414373; ENSG00000231129; Homo sapiens. [Genome view] ENST00000457078; ENSP00000412553; ENSG00000236342; Homo sapiens. [Genome view] ENST00000457111; ENSP00000413319; ENSG00000236149; Homo sapiens. [Genome view] |
| GeneID | 23. |
| KEGG | hsa:23. |
| UCSC | uc003nql.1. human. uc003nqm.1. human. |
Organism-specific databases | |
| CTD | 23. |
| GeneCards | GC06P030647. |
| H-InvDB | HIX0005694. HIX0057739. HIX0058106. |
| HGNC | HGNC:70. ABCF1. |
| HPA | HPA017578. |
| MIM | 603429. gene. |
| PharmGKB | PA24405. |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOVERGEN | Q8NE71. |
| OMA | LSPPILG |
| OrthoDB | EOG9J4029 |
Gene expression databases | |
| ArrayExpress | Q8NE71. |
| CleanEx | HS_ABCF1. |
| Genevestigator | Q8NE71. |
| GermOnline | ENSG00000204574. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR003439. ABC_transporter-like. IPR017871. ABC_transporter_CS. IPR003593. ATPase_AAA+_core. [Graphical view] |
| Pfam | PF00005. ABC_tran. 2 hits. [Graphical view] |
| SMART | SM00382. AAA. 2 hits. [Graphical view] |
| PROSITE | PS00211. ABC_TRANSPORTER_1. 2 hits. PS50893. ABC_TRANSPORTER_2. 2 hits. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 69. |
| SOURCE | Search... |
Entry information
| Entry name | ABCF1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q8NE71 Secondary accession number(s): O14897, Q69YP6 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 6 Human chromosome 6: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with


