ID TDRD9_HUMAN Reviewed; 1382 AA. AC Q8NDG6; A1A4S7; Q6ZU54; Q8N7T3; Q8N827; Q8N9V5; Q96AS9; DT 20-MAY-2008, integrated into UniProtKB/Swiss-Prot. DT 02-MAR-2010, sequence version 3. DT 27-MAR-2024, entry version 167. DE RecName: Full=ATP-dependent RNA helicase TDRD9 {ECO:0000305}; DE EC=3.6.4.13 {ECO:0000250|UniProtKB:Q14BI7}; DE AltName: Full=Tudor domain-containing protein 9 {ECO:0000305}; GN Name=TDRD9 {ECO:0000312|HGNC:HGNC:20122}; GN Synonyms=C14orf75 {ECO:0000312|HGNC:HGNC:20122}; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=12508121; DOI=10.1038/nature01348; RA Heilig R., Eckenberg R., Petit J.-L., Fonknechten N., Da Silva C., RA Cattolico L., Levy M., Barbe V., De Berardinis V., Ureta-Vidal A., RA Pelletier E., Vico V., Anthouard V., Rowen L., Madan A., Qin S., Sun H., RA Du H., Pepin K., Artiguenave F., Robert C., Cruaud C., Bruels T., RA Jaillon O., Friedlander L., Samson G., Brottier P., Cure S., Segurens B., RA Aniere F., Samain S., Crespeau H., Abbasi N., Aiach N., Boscus D., RA Dickhoff R., Dors M., Dubois I., Friedman C., Gouyvenoux M., James R., RA Madan A., Mairey-Estrada B., Mangenot S., Martins N., Menard M., Oztas S., RA Ratcliffe A., Shaffer T., Trask B., Vacherie B., Bellemere C., Belser C., RA Besnard-Gonnet M., Bartol-Mavel D., Boutard M., Briez-Silla S., RA Combette S., Dufosse-Laurent V., Ferron C., Lechaplais C., Louesse C., RA Muselet D., Magdelenat G., Pateau E., Petit E., Sirvain-Trukniewicz P., RA Trybou A., Vega-Czarny N., Bataille E., Bluet E., Bordelais I., Dubois M., RA Dumont C., Guerin T., Haffray S., Hammadi R., Muanga J., Pellouin V., RA Robert D., Wunderle E., Gauguet G., Roy A., Sainte-Marthe L., Verdier J., RA Verdier-Discala C., Hillier L.W., Fulton L., McPherson J., Matsuda F., RA Wilson R., Scarpelli C., Gyapay G., Wincker P., Saurin W., Quetier F., RA Waterston R., Hood L., Weissenbach J.; RT "The DNA sequence and analysis of human chromosome 14."; RL Nature 421:601-607(2003). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 195-1382 (ISOFORM 1). RC TISSUE=Testis; RX PubMed=17974005; DOI=10.1186/1471-2164-8-399; RA Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., RA Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., RA Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., RA Wiemann S., Schupp I.; RT "The full-ORF clone resource of the German cDNA consortium."; RL BMC Genomics 8:399-399(2007). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 275-1382 (ISOFORM 2), AND RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 635-1382 (ISOFORM 1). RC TISSUE=Testis; RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., RA Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., RA Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., RA Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., RA Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., RA Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., RA Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., RA Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., RA Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., RA Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., RA Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., RA Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., RA Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., RA Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., RA Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., RA Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., RA Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., RA Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., RA Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 278-1382 (ISOFORM 1). RC TISSUE=Bone marrow; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [5] RP INVOLVEMENT IN SPGF30, SUBCELLULAR LOCATION, AND FUNCTION. RX PubMed=28536242; DOI=10.1136/jmedgenet-2017-104514; RA Arafat M., Har-Vardi I., Harlev A., Levitas E., Zeadna A., Abofoul-Azab M., RA Dyomin V., Sheffield V.C., Lunenfeld E., Huleihel M., Parvari R.; RT "Mutation in TDRD9 causes non-obstructive azoospermia in infertile men."; RL J. Med. Genet. 54:633-639(2017). CC -!- FUNCTION: ATP-binding RNA helicase required during spermatogenesis CC (PubMed:28536242). Required to repress transposable elements and CC prevent their mobilization, which is essential for the germline CC integrity. Acts via the piRNA metabolic process, which mediates the CC repression of transposable elements during meiosis by forming complexes CC composed of piRNAs and Piwi proteins and governs the methylation and CC subsequent repression of transposons. Acts downstream of piRNA CC biogenesis: exclusively required for transposon silencing in the CC nucleus, suggesting that it acts as a nuclear effector in the nucleus CC together with PIWIL4. {ECO:0000250|UniProtKB:Q14BI7, CC ECO:0000269|PubMed:28536242}. CC -!- CATALYTIC ACTIVITY: CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065, CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616, CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13; CC Evidence={ECO:0000250|UniProtKB:Q14BI7}; CC -!- SUBUNIT: Interacts with piRNA-associated proteins PIWIL1 and PIWIL4. CC {ECO:0000269|PubMed:28536242}. CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:28536242}. Nucleus CC {ECO:0000250|UniProtKB:Q14BI7}. Note=Component of the nuage, also named CC P granule, a germ-cell-specific organelle required to repress CC transposon activity during meiosis. Specifically localizes to piP- CC bodies, a subset of the nuage which contains secondary piRNAs. PIWIL2 CC is required for its localization to piP-bodies. CC {ECO:0000250|UniProtKB:Q14BI7}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q8NDG6-1; Sequence=Displayed; CC Name=2; CC IsoId=Q8NDG6-2; Sequence=VSP_033552; CC -!- DISEASE: Spermatogenic failure 30 (SPGF30) [MIM:618110]: An autosomal CC recessive infertility disorder caused by spermatogenesis defects that CC result in non-obstructive azoospermia or cryptozoospermia. CC {ECO:0000269|PubMed:28536242}. Note=The disease is caused by variants CC affecting the gene represented in this entry. CC -!- SIMILARITY: Belongs to the DEAD box helicase family. DEAH subfamily. CC {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAI28058.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; CC Sequence=AAI28058.1; Type=Frameshift; Evidence={ECO:0000305}; CC Sequence=BAC04182.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=BAC05047.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=BAC05144.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=BAC86372.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AL132712; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AL136001; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AL833915; CAD38771.1; -; mRNA. DR EMBL; AK093483; BAC04182.1; ALT_INIT; mRNA. DR EMBL; AK097429; BAC05047.1; ALT_INIT; mRNA. DR EMBL; AK097699; BAC05144.1; ALT_INIT; mRNA. DR EMBL; AK125978; BAC86372.1; ALT_INIT; mRNA. DR EMBL; BC016796; AAH16796.1; -; mRNA. DR EMBL; BC128057; AAI28058.1; ALT_SEQ; mRNA. DR CCDS; CCDS9987.2; -. [Q8NDG6-1] DR PIR; G02632; G02632. DR RefSeq; NP_694591.2; NM_153046.2. [Q8NDG6-1] DR AlphaFoldDB; Q8NDG6; -. DR SMR; Q8NDG6; -. DR BioGRID; 125766; 8. DR IntAct; Q8NDG6; 1. DR STRING; 9606.ENSP00000387303; -. DR iPTMnet; Q8NDG6; -. DR PhosphoSitePlus; Q8NDG6; -. DR BioMuta; TDRD9; -. DR EPD; Q8NDG6; -. DR MassIVE; Q8NDG6; -. DR PaxDb; 9606-ENSP00000387303; -. DR PeptideAtlas; Q8NDG6; -. DR ProteomicsDB; 73024; -. [Q8NDG6-1] DR ProteomicsDB; 73025; -. [Q8NDG6-2] DR Pumba; Q8NDG6; -. DR Antibodypedia; 47449; 91 antibodies from 16 providers. DR DNASU; 122402; -. DR Ensembl; ENST00000409874.9; ENSP00000387303.4; ENSG00000156414.20. [Q8NDG6-1] DR GeneID; 122402; -. DR KEGG; hsa:122402; -. DR MANE-Select; ENST00000409874.9; ENSP00000387303.4; NM_153046.3; NP_694591.2. DR UCSC; uc001yom.5; human. [Q8NDG6-1] DR AGR; HGNC:20122; -. DR CTD; 122402; -. DR DisGeNET; 122402; -. DR GeneCards; TDRD9; -. DR HGNC; HGNC:20122; TDRD9. DR HPA; ENSG00000156414; Group enriched (parathyroid gland, testis). DR MalaCards; TDRD9; -. DR MIM; 617963; gene. DR MIM; 618110; phenotype. DR neXtProt; NX_Q8NDG6; -. DR OpenTargets; ENSG00000156414; -. DR Orphanet; 399805; Male infertility with azoospermia or oligozoospermia due to single gene mutation. DR PharmGKB; PA134890186; -. DR VEuPathDB; HostDB:ENSG00000156414; -. DR eggNOG; KOG0920; Eukaryota. DR GeneTree; ENSGT00940000157035; -. DR HOGENOM; CLU_002601_1_0_1; -. DR InParanoid; Q8NDG6; -. DR OMA; FWMHYIF; -. DR OrthoDB; 21853at2759; -. DR PhylomeDB; Q8NDG6; -. DR TreeFam; TF324869; -. DR PathwayCommons; Q8NDG6; -. DR Reactome; R-HSA-5601884; PIWI-interacting RNA (piRNA) biogenesis. DR SignaLink; Q8NDG6; -. DR BioGRID-ORCS; 122402; 7 hits in 1151 CRISPR screens. DR ChiTaRS; TDRD9; human. DR GenomeRNAi; 122402; -. DR Pharos; Q8NDG6; Tbio. DR PRO; PR:Q8NDG6; -. DR Proteomes; UP000005640; Chromosome 14. DR RNAct; Q8NDG6; Protein. DR Bgee; ENSG00000156414; Expressed in right testis and 126 other cell types or tissues. DR ExpressionAtlas; Q8NDG6; baseline and differential. DR GO; GO:0005737; C:cytoplasm; IDA:UniProtKB. DR GO; GO:0005634; C:nucleus; IDA:UniProtKB. DR GO; GO:0071547; C:piP-body; ISS:UniProtKB. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATP hydrolysis activity; ISS:UniProtKB. DR GO; GO:0004386; F:helicase activity; IBA:GO_Central. DR GO; GO:0003723; F:RNA binding; IBA:GO_Central. DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC. DR GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW. DR GO; GO:0009566; P:fertilization; ISS:UniProtKB. DR GO; GO:0007141; P:male meiosis I; ISS:UniProtKB. DR GO; GO:0007140; P:male meiotic nuclear division; ISS:UniProtKB. DR GO; GO:0034587; P:piRNA processing; ISS:UniProtKB. DR GO; GO:0141006; P:piRNA-mediated retrotransposon silencing by heterochromatin formation; ISS:UniProtKB. DR GO; GO:0141007; P:siRNA-mediated retrotransposon silencing by heterochromatin formation; ISS:UniProtKB. DR GO; GO:0007283; P:spermatogenesis; IMP:UniProtKB. DR CDD; cd17988; DEXHc_TDRD9; 1. DR CDD; cd18791; SF2_C_RHA; 1. DR CDD; cd20431; Tudor_TDRD9; 1. DR Gene3D; 1.20.120.1080; -; 1. DR Gene3D; 2.30.30.140; -; 1. DR Gene3D; 2.40.50.90; -; 1. DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2. DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom. DR InterPro; IPR007502; Helicase-assoc_dom. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR035437; SNase_OB-fold_sf. DR InterPro; IPR002999; Tudor. DR InterPro; IPR047384; Tudor_TDRD9. DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1. DR PANTHER; PTHR18934:SF113; ATP-DEPENDENT RNA HELICASE TDRD9; 1. DR Pfam; PF00270; DEAD; 1. DR Pfam; PF21010; HA2_C; 1. DR Pfam; PF00271; Helicase_C; 1. DR Pfam; PF00567; TUDOR; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00847; HA2; 1. DR SMART; SM00490; HELICc; 1. DR SMART; SM00333; TUDOR; 1. DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1. DR SUPFAM; SSF63748; Tudor/PWWP/MBT; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. DR PROSITE; PS50304; TUDOR; 1. DR Genevisible; Q8NDG6; HS. PE 2: Evidence at transcript level; KW Alternative splicing; ATP-binding; Cytoplasm; Developmental protein; KW Differentiation; Helicase; Hydrolase; Meiosis; Nucleotide-binding; Nucleus; KW Reference proteome; RNA-mediated gene silencing; Spermatogenesis. FT CHAIN 1..1382 FT /note="ATP-dependent RNA helicase TDRD9" FT /id="PRO_0000333813" FT DOMAIN 142..308 FT /note="Helicase ATP-binding" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541" FT DOMAIN 377..544 FT /note="Helicase C-terminal" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542" FT DOMAIN 944..1004 FT /note="Tudor" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00211" FT REGION 36..62 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOTIF 254..257 FT /note="DEAH box" FT /evidence="ECO:0000250|UniProtKB:Q14BI7" FT BINDING 155..162 FT /ligand="ATP" FT /ligand_id="ChEBI:CHEBI:30616" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541" FT VAR_SEQ 1095..1285 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:14702039" FT /id="VSP_033552" FT CONFLICT 758 FT /note="P -> L (in Ref. 3; BAC05047)" FT /evidence="ECO:0000305" FT CONFLICT 1260 FT /note="T -> G (in Ref. 4; AAH16796)" FT /evidence="ECO:0000305" FT CONFLICT 1276 FT /note="V -> F (in Ref. 3; BAC05144)" FT /evidence="ECO:0000305" SQ SEQUENCE 1382 AA; 155683 MW; 8A48E71E4A12041F CRC64; MLRKLTIEQI NDWFTIGKTV TNVELLGAPP AFPAGAAREE VQRQDVAPGA GPAAQAPALA QAPARPAAAF ERSLSQRSSE VEYINKYRQL EAQELDVCRS VQPTSGPGPR PSLAKLSSVT CIPGTTYKYP DLPISRYKEE VVSLIESNSV VIIHGATGSG KSTQLPQYIL DHYVQRSAYC SIVVTQPRKI GASSIARWIS KERAWTLGGV VGYQVGLEKI ATEDTRLIYM TTGVLLQKIV SAKSLMEFTH IIIDEVHERT EEMDFLLLVV RKLLRTNSRF VKVVLMSATI SCKEFADYFA VPVQNKMNPA YIFEVEGKPH SVEEYYLNDL EHIHHSKLSP HLLEEPVITK DIYEVAVSLI QMFDDLDMKE SGNKAWSGAQ FVLERSSVLV FLPGLGEINY MHELLTSLVH KRLQVYPLHS SVALEEQNNV FLSPVPGYRK IILSTNIAES SVTVPDVKYV IDFCLTRTLV CDEDTNYQSL RLSWASKTSC NQRKGRAGRV SRGYCYRLVH KDFWDNSIPD HVVPEMLRCP LGSTILKVKL LDMGEPRALL ATALSPPGLS DIERTILLLK EVGALAVSGQ REDENPHDGE LTFLGRVLAQ LPVNQQLGKL IVLGHVFGCL DECLIIAAAL SLKNFFAMPF RQHLDGYRNK VNFSGSSKSD CIALVEAFKT WKACRQTGEL RYPKDELNWG RLNYIQIKRI REVAELYEEL KTRISQFNMH VDSRRPVMDQ EYIYKQRFIL QVVLAGAFYP NYFTFGQPDE EMAVRELAGK DPKTTVVLKH IPPYGFLYYK QLQSLFRQCG QVKSIVFDGA KAFVEFSRNP TERFKTLPAV YMAIKMSQLK VSLELSVHSA EEIEGKVQGM NVSKLRNTRV NVDFQKQTVD PMQVSFNTSD RSQTVTDLLL TIDVTEVVEV GHFWGYRIDE NNSEILKKLT AEINQLTLVP LPTHPHPDLV CLAPFADFDK QRYFRAQVLY VSGNSAEVFF VDYGNKSHVD LHLLMEIPCQ FLELPFQALE FKICKMRPSA KSLVCGKHWS DGASQWFASL VSGCTLLVKV FSVVHSVLHV DVYQYSGVQD AINIRDVLIQ QGYAELTEES YESKQSHEVL KGLFSKSVEN MTDGSVPFPM KDDEKYLIRI LLESFSTNKL GTPNCKAELH GPFNPYELKC HSLTRISKFR CVWIEKESIN SVIISDAPED LHQRMLVAAS LSINATGSTM LLRETSLMPH IPGLPALLSM LFAPVIELRI DQNGKYYTGV LCGLGWNPAT GASILPEHDM ELAFDVQFSV EDVVEVNILR AAINKLVCDG PNGCKCLGPE RVAQLQDIAR QKLLGLFCQS KPREKIVPKW HEKPYEWNQV DPKLVMEQAD RESSRGKNTF LYQLHKLVVL GT //