ID CTL5_HUMAN Reviewed; 719 AA. AC Q8NCS7; A0A0A0MRP1; B5MCU3; Q4G0K0; Q8NA44; Q8NB86; DT 30-AUG-2005, integrated into UniProtKB/Swiss-Prot. DT 12-SEP-2018, sequence version 5. DT 27-MAR-2024, entry version 153. DE RecName: Full=Choline transporter-like protein 5 {ECO:0000305}; DE AltName: Full=Solute carrier family 44 member 5; GN Name=SLC44A5 {ECO:0000312|HGNC:HGNC:28524}; Synonyms=CTL5; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), AND NUCLEOTIDE SEQUENCE RP [LARGE SCALE MRNA] OF 307-719 (ISOFORM 1). RC TISSUE=Brain, and Testis; RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., RA Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., RA Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., RA Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., RA Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., RA Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., RA Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., RA Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., RA Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., RA Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., RA Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., RA Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., RA Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., RA Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., RA Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., RA Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., RA Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., RA Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., RA Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=16710414; DOI=10.1038/nature04727; RA Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., RA Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., RA Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K., RA Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., RA Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., RA Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., RA Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., RA Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., RA Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., RA Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., RA Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., RA Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., RA Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., RA Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., RA Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., RA Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., RA Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., RA Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., RA Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., RA McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., RA Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., RA Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., RA Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., RA Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., RA Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., RA White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., RA Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., RA Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., RA Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.; RT "The DNA sequence and biological annotation of human chromosome 1."; RL Nature 441:315-321(2006). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 3). RC TISSUE=Testis; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [5] RP IDENTIFICATION, AND NOMENCLATURE. RX PubMed=15715662; DOI=10.1111/j.1471-4159.2004.02962.x; RA Traiffort E., Ruat M., O'Regan S., Meunier F.-M.; RT "Molecular characterization of the family of choline transporter-like RT proteins and their splice variants."; RL J. Neurochem. 92:1116-1125(2005). RN [6] RP FUNCTION, TRANSPORTER ACTIVITY, AND SUBCELLULAR LOCATION. RX PubMed=23651124; DOI=10.1111/jnc.12298; RA Song P., Rekow S.S., Singleton C.A., Sekhon H.S., Dissen G.A., Zhou M., RA Campling B., Lindstrom J., Spindel E.R.; RT "Choline transporter-like protein 4 (CTL4) links to non-neuronal RT acetylcholine synthesis."; RL J. Neurochem. 126:451-461(2013). CC -!- FUNCTION: Choline/H+ antiporter. {ECO:0000305|PubMed:23651124}. CC -!- CATALYTIC ACTIVITY: CC Reaction=choline(out) + n H(+)(in) = choline(in) + n H(+)(out); CC Xref=Rhea:RHEA:75463, ChEBI:CHEBI:15354, ChEBI:CHEBI:15378; CC Evidence={ECO:0000305|PubMed:23651124}; CC -!- INTERACTION: CC Q8NCS7; P23560-2: BDNF; NbExp=3; IntAct=EBI-21504521, EBI-12275524; CC Q8NCS7; P45973: CBX5; NbExp=3; IntAct=EBI-21504521, EBI-78219; CC Q8NCS7; P42858: HTT; NbExp=3; IntAct=EBI-21504521, EBI-466029; CC Q8NCS7; Q8WXH2: JPH3; NbExp=3; IntAct=EBI-21504521, EBI-1055254; CC Q8NCS7; P16284: PECAM1; NbExp=3; IntAct=EBI-21504521, EBI-716404; CC Q8NCS7; P54725: RAD23A; NbExp=3; IntAct=EBI-21504521, EBI-746453; CC Q8NCS7; P50454: SERPINH1; NbExp=3; IntAct=EBI-21504521, EBI-350723; CC Q8NCS7; Q13148: TARDBP; NbExp=6; IntAct=EBI-21504521, EBI-372899; CC Q8NCS7; P37173: TGFBR2; NbExp=3; IntAct=EBI-21504521, EBI-296151; CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305|PubMed:23651124}; CC Multi-pass membrane protein {ECO:0000255}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=1; Synonyms=A; CC IsoId=Q8NCS7-1; Sequence=Displayed; CC Name=2; Synonyms=B; CC IsoId=Q8NCS7-4; Sequence=VSP_059803; CC Name=3; CC IsoId=Q8NCS7-5; Sequence=VSP_059802, VSP_059803; CC -!- SIMILARITY: Belongs to the CTL (choline transporter-like) family. CC {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=BAC03655.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AK091400; BAC03655.1; ALT_INIT; mRNA. DR EMBL; AK093170; BAC04084.1; -; mRNA. DR EMBL; AC118550; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AC093156; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AC107627; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AC118990; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AL096829; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; KC876880; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CH471059; EAX06402.1; -; Genomic_DNA. DR EMBL; BC028743; AAH28743.1; -; mRNA. DR EMBL; BC034580; AAH34580.1; -; mRNA. DR EMBL; BC051740; AAH51740.1; -; mRNA. DR CCDS; CCDS44164.1; -. [Q8NCS7-4] DR CCDS; CCDS667.1; -. [Q8NCS7-1] DR RefSeq; NP_001123530.1; NM_001130058.1. [Q8NCS7-4] DR RefSeq; NP_001307212.1; NM_001320283.1. DR RefSeq; NP_001307214.1; NM_001320285.1. [Q8NCS7-5] DR RefSeq; NP_001307216.1; NM_001320287.1. [Q8NCS7-5] DR RefSeq; NP_689910.2; NM_152697.4. [Q8NCS7-1] DR RefSeq; XP_016856098.1; XM_017000609.1. [Q8NCS7-1] DR RefSeq; XP_016856099.1; XM_017000610.1. [Q8NCS7-1] DR RefSeq; XP_016856100.1; XM_017000611.1. DR AlphaFoldDB; Q8NCS7; -. DR BioGRID; 128491; 23. DR IntAct; Q8NCS7; 18. DR MINT; Q8NCS7; -. DR STRING; 9606.ENSP00000359892; -. DR TCDB; 2.A.92.1.5; the choline transporter-like (ctl) family. DR GlyCosmos; Q8NCS7; 3 sites, No reported glycans. DR GlyGen; Q8NCS7; 3 sites. DR iPTMnet; Q8NCS7; -. DR PhosphoSitePlus; Q8NCS7; -. DR BioMuta; SLC44A5; -. DR DMDM; 519668678; -. DR MassIVE; Q8NCS7; -. DR PaxDb; 9606-ENSP00000359892; -. DR PeptideAtlas; Q8NCS7; -. DR ProteomicsDB; 72936; -. [Q8NCS7-1] DR Antibodypedia; 66042; 10 antibodies from 6 providers. DR DNASU; 204962; -. DR Ensembl; ENST00000370855.5; ENSP00000359892.5; ENSG00000137968.17. [Q8NCS7-1] DR Ensembl; ENST00000370859.8; ENSP00000359896.3; ENSG00000137968.17. [Q8NCS7-4] DR GeneID; 204962; -. DR KEGG; hsa:204962; -. DR MANE-Select; ENST00000370859.8; ENSP00000359896.3; NM_001130058.2; NP_001123530.1. [Q8NCS7-4] DR UCSC; uc001dgt.3; human. [Q8NCS7-1] DR UCSC; uc001dgu.4; human. DR AGR; HGNC:28524; -. DR CTD; 204962; -. DR DisGeNET; 204962; -. DR GeneCards; SLC44A5; -. DR HGNC; HGNC:28524; SLC44A5. DR HPA; ENSG00000137968; Tissue enhanced (skin). DR MIM; 620329; gene. DR neXtProt; NX_Q8NCS7; -. DR OpenTargets; ENSG00000137968; -. DR PharmGKB; PA142670901; -. DR VEuPathDB; HostDB:ENSG00000137968; -. DR eggNOG; KOG1362; Eukaryota. DR GeneTree; ENSGT00940000156600; -. DR HOGENOM; CLU_017181_3_1_1; -. DR InParanoid; Q8NCS7; -. DR OMA; QCKHENK; -. DR OrthoDB; 551961at2759; -. DR TreeFam; TF313325; -. DR PathwayCommons; Q8NCS7; -. DR Reactome; R-HSA-1483191; Synthesis of PC. DR Reactome; R-HSA-425366; Transport of bile salts and organic acids, metal ions and amine compounds. DR SignaLink; Q8NCS7; -. DR BioGRID-ORCS; 204962; 12 hits in 1156 CRISPR screens. DR ChiTaRS; SLC44A5; human. DR GenomeRNAi; 204962; -. DR Pharos; Q8NCS7; Tdark. DR PRO; PR:Q8NCS7; -. DR Proteomes; UP000005640; Chromosome 1. DR RNAct; Q8NCS7; Protein. DR Bgee; ENSG00000137968; Expressed in cortical plate and 136 other cell types or tissues. DR GO; GO:0016020; C:membrane; IBA:GO_Central. DR GO; GO:0005886; C:plasma membrane; IDA:UniProtKB. DR GO; GO:0015297; F:antiporter activity; IEA:UniProtKB-KW. DR GO; GO:0015220; F:choline transmembrane transporter activity; IDA:UniProtKB. DR GO; GO:0022857; F:transmembrane transporter activity; IBA:GO_Central. DR GO; GO:0015871; P:choline transport; IDA:UniProtKB. DR GO; GO:0006656; P:phosphatidylcholine biosynthetic process; TAS:Reactome. DR GO; GO:0055085; P:transmembrane transport; IBA:GO_Central. DR InterPro; IPR007603; Choline_transptr-like. DR PANTHER; PTHR12385; CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44); 1. DR PANTHER; PTHR12385:SF42; CHOLINE TRANSPORTER-LIKE PROTEIN 5; 1. DR Pfam; PF04515; Choline_transpo; 1. DR Genevisible; Q8NCS7; HS. PE 1: Evidence at protein level; KW Alternative splicing; Antiport; Cell membrane; Glycoprotein; Membrane; KW Reference proteome; Transmembrane; Transmembrane helix; Transport. FT CHAIN 1..719 FT /note="Choline transporter-like protein 5" FT /id="PRO_0000191726" FT TOPO_DOM 1..38 FT /note="Cytoplasmic" FT /evidence="ECO:0000255" FT TRANSMEM 39..59 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 60..242 FT /note="Extracellular" FT /evidence="ECO:0000255" FT TRANSMEM 243..263 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 264..265 FT /note="Cytoplasmic" FT /evidence="ECO:0000255" FT TRANSMEM 266..286 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 287..325 FT /note="Extracellular" FT /evidence="ECO:0000255" FT TRANSMEM 326..346 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 347..351 FT /note="Cytoplasmic" FT /evidence="ECO:0000255" FT TRANSMEM 352..372 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 373..374 FT /note="Extracellular" FT /evidence="ECO:0000255" FT TRANSMEM 375..395 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 396..460 FT /note="Cytoplasmic" FT /evidence="ECO:0000255" FT TRANSMEM 461..481 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 482..515 FT /note="Extracellular" FT /evidence="ECO:0000255" FT TRANSMEM 516..536 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 537..610 FT /note="Cytoplasmic" FT /evidence="ECO:0000255" FT TRANSMEM 611..631 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 632..649 FT /note="Extracellular" FT /evidence="ECO:0000255" FT TRANSMEM 650..670 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 671..719 FT /note="Cytoplasmic" FT /evidence="ECO:0000255" FT REGION 1..24 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 1..23 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT CARBOHYD 88 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 190 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 314 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT VAR_SEQ 1..42 FT /note="Missing (in isoform 3)" FT /evidence="ECO:0000303|PubMed:15489334" FT /id="VSP_059802" FT VAR_SEQ 683..719 FT /note="CEDLERNDGSTEKPYFVTPNLHGILIKKQLVPQKQKE -> LEDLERNDGST FT ARPYYVSQPLLKIFQEENPQTRKQ (in isoform 2 and isoform 3)" FT /id="VSP_059803" FT CONFLICT 501 FT /note="L -> P (in Ref. 1; BAC04084)" FT /evidence="ECO:0000305" FT CONFLICT 647 FT /note="N -> Y (in Ref. 4; AAH28743)" FT /evidence="ECO:0000305" FT CONFLICT 688 FT /note="R -> I (in Ref. 1; BAC03655)" FT /evidence="ECO:0000305" SQ SEQUENCE 719 AA; 81694 MW; FF5B57849397F031 CRC64; MNDTEKPADT PSEEEDFGDP RTYDPDFKGP VANRSCTDVL CCMIFLLCII GYIVLGLVAW VHGDPRRAAY PTDSQGHFCG QKGTPNENKT ILFYFNLLRC TSPSVLLNLQ CPTTQICVSK CPEKFLTYVE MQLLYTKDKS YWEDYRQFCK TTAKPVKSLT QLLLDDDCPT AIFPSKPFLQ RCFPDFSTKN GTLTIGSKMM FQDGNGGTRS VVELGIAANG INKLLDAKSL GLKVFEDYAR TWYWILIGLT IAMVLSWIFL ILLRFIAGCL FWVFMIGVIG IIGYGIWHCY QQYTNLQERP SSVLTIYDIG IQTNISMYFE LQQTWFTFMI ILCIIEVIVI LMLIFLRNRI RVAIILLKEG SKAIGYVPST LVYPALTFIL LSICICYWVV TAVFLATSGV PVYKVIAPGG HCIHENQTCD PEIFNTTEIA KACPGALCNF AFYGGKSLYH QYIPTFHVYN LFVFLWLINF VIALGQCALA GAFATYYWAM KKPDDIPRYP LFTAFGRAIR YHTGSLAFGS LIIALIQMFK IVLEYLDHRL KRTQNTLSKF LQCCLRCCFW CLENAIKFLN RNAYIMIAIY GRNFCRSAKD AFNLLMRNVL KVAVTDEVTY FVLFLGKLLV AGSIGVLAFL FFTQRLPVIA QGPASLNYYW VPLLTVIFGS YLIAHGFFSV YAMCVETIFI CFCEDLERND GSTEKPYFVT PNLHGILIKK QLVPQKQKE //