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Q8NCA5

- FA98A_HUMAN

UniProt

Q8NCA5 - FA98A_HUMAN

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Protein
Protein FAM98A
Gene
FAM98A
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. poly(A) RNA binding Source: UniProtKB
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAM98A
Gene namesi
Name:FAM98A
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 2

Organism-specific databases

HGNCiHGNC:24520. FAM98A.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA142671777.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 519519Protein FAM98A
PRO_0000187184Add
BLAST

Proteomic databases

MaxQBiQ8NCA5.
PaxDbiQ8NCA5.
PRIDEiQ8NCA5.

PTM databases

PhosphoSiteiQ8NCA5.

Expressioni

Gene expression databases

ArrayExpressiQ8NCA5.
BgeeiQ8NCA5.
CleanExiHS_FAM98A.
GenevestigatoriQ8NCA5.

Organism-specific databases

HPAiHPA036250.
HPA036251.

Interactioni

Protein-protein interaction databases

BioGridi117437. 11 interactions.
IntActiQ8NCA5. 3 interactions.
MINTiMINT-4718724.
STRINGi9606.ENSP00000238823.

Structurei

3D structure databases

ProteinModelPortaliQ8NCA5.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi109 – 1124Poly-Leu
Compositional biasi315 – 3184Poly-Pro
Compositional biasi335 – 514180Gly-rich
Add
BLAST

Sequence similaritiesi

Belongs to the FAM98 family.

Phylogenomic databases

eggNOGiNOG313102.
HOGENOMiHOG000231951.
HOVERGENiHBG054060.
InParanoidiQ8NCA5.
OMAiEMNCPYL.
OrthoDBiEOG7BKCV2.
PhylomeDBiQ8NCA5.
TreeFamiTF320308.

Family and domain databases

InterProiIPR018797. Uncharacterised_FAM98.
[Graphical view]
PfamiPF10239. DUF2465. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q8NCA5-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MECDLMETDI LESLEDLGYK GPLLEDGALS QAVSAGASSP EFTKLCAWLV    50
SELRVLCKLE ENVQATNSPS EAEEFQLEVS GLLGEMNCPY LSLTSGDVTK 100
RLLIQKNCLL LLTYLISELE AARMLCVNAP PKKAQEGGGS EVFQELKGIC 150
IALGMSKPPA NITMFQFFSG IEKKKLKETL AKVPPNHVGK PLLKKPMGPA 200
HWEKIEAINQ AIANEYEVRR KLLIKRLDVT VQSFGWSDRA KSQTEKLAKV 250
YQPKRSVLSP KTTISVAHLL AARQDLSKIL RTSSGSIREK TACAINKVLM 300
GRVPDRGGRP NEIEPPPPEM PPWQKRQDGP QQQTGGRGGG RGGYEHSSYG 350
GRGGHEQGGG RGGRGGYDHG GRGGGRGNKH QGGWTDGGSG GGGGYQDGGY 400
RDSGFQPGGY HGGHSSGGYQ GGGYGGFQTS SSYTGSGYQG GGYQQDNRYQ 450
DGGHHGDRGG GRGGRGGRGG RGGRAGQGGG WGGRGSQNYH QGGQFEQHFQ 500
HGGYQYNHSG FGQGRHYTS 519
Length:519
Mass (Da):55,401
Last modified:October 1, 2002 - v1
Checksum:i73BE4781F3449270
GO
Isoform 2 (identifier: Q8NCA5-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     173-173: Missing.

Show »
Length:518
Mass (Da):55,273
Checksum:iBED845DFE305060D
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei173 – 1731Missing in isoform 2.
VSP_039184

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti338 – 3381G → V in CAB43217. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK074867 mRNA. Translation: BAC11255.1.
CH471053 Genomic DNA. Translation: EAX00431.1.
BC136768 mRNA. Translation: AAI36769.1.
BC136770 mRNA. Translation: AAI36771.1.
AL049943 mRNA. Translation: CAB43217.2.
CCDSiCCDS33179.1. [Q8NCA5-2]
PIRiT08675.
RefSeqiNP_056290.3. NM_015475.3. [Q8NCA5-2]
UniGeneiHs.468140.

Genome annotation databases

EnsembliENST00000238823; ENSP00000238823; ENSG00000119812. [Q8NCA5-2]
GeneIDi25940.
KEGGihsa:25940.
UCSCiuc002rpa.1. human. [Q8NCA5-2]
uc010yne.1. human. [Q8NCA5-1]

Polymorphism databases

DMDMi74715180.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK074867 mRNA. Translation: BAC11255.1 .
CH471053 Genomic DNA. Translation: EAX00431.1 .
BC136768 mRNA. Translation: AAI36769.1 .
BC136770 mRNA. Translation: AAI36771.1 .
AL049943 mRNA. Translation: CAB43217.2 .
CCDSi CCDS33179.1. [Q8NCA5-2 ]
PIRi T08675.
RefSeqi NP_056290.3. NM_015475.3. [Q8NCA5-2 ]
UniGenei Hs.468140.

3D structure databases

ProteinModelPortali Q8NCA5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 117437. 11 interactions.
IntActi Q8NCA5. 3 interactions.
MINTi MINT-4718724.
STRINGi 9606.ENSP00000238823.

PTM databases

PhosphoSitei Q8NCA5.

Polymorphism databases

DMDMi 74715180.

Proteomic databases

MaxQBi Q8NCA5.
PaxDbi Q8NCA5.
PRIDEi Q8NCA5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000238823 ; ENSP00000238823 ; ENSG00000119812 . [Q8NCA5-2 ]
GeneIDi 25940.
KEGGi hsa:25940.
UCSCi uc002rpa.1. human. [Q8NCA5-2 ]
uc010yne.1. human. [Q8NCA5-1 ]

Organism-specific databases

CTDi 25940.
GeneCardsi GC02M033808.
H-InvDB HIX0001962.
HGNCi HGNC:24520. FAM98A.
HPAi HPA036250.
HPA036251.
neXtProti NX_Q8NCA5.
PharmGKBi PA142671777.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG313102.
HOGENOMi HOG000231951.
HOVERGENi HBG054060.
InParanoidi Q8NCA5.
OMAi EMNCPYL.
OrthoDBi EOG7BKCV2.
PhylomeDBi Q8NCA5.
TreeFami TF320308.

Miscellaneous databases

ChiTaRSi FAM98A. human.
GenomeRNAii 25940.
NextBioi 47508.
PROi Q8NCA5.

Gene expression databases

ArrayExpressi Q8NCA5.
Bgeei Q8NCA5.
CleanExi HS_FAM98A.
Genevestigatori Q8NCA5.

Family and domain databases

InterProi IPR018797. Uncharacterised_FAM98.
[Graphical view ]
Pfami PF10239. DUF2465. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
  2. "Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
    Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H.
    , Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., Wilson R.K.
    Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Brain.
  5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 207-519 (ISOFORMS 1/2).
    Tissue: Brain.
  6. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiFA98A_HUMAN
AccessioniPrimary (citable) accession number: Q8NCA5
Secondary accession number(s): B2RNA2, Q9Y3Y6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: October 1, 2002
Last modified: July 9, 2014
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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