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Q8NBS9

- TXND5_HUMAN

UniProt

Q8NBS9 - TXND5_HUMAN

Protein

Thioredoxin domain-containing protein 5

Gene

TXNDC5

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 129 (01 Oct 2014)
      Sequence version 2 (11 Apr 2003)
      Previous versions | rss
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    Functioni

    Possesses thioredoxin activity. Has been shown to reduce insulin disulfide bonds. Also complements protein disulfide-isomerase deficiency in yeast By similarity.By similarity

    GO - Molecular functioni

    1. protein binding Source: IntAct
    2. protein disulfide isomerase activity Source: RefGenome

    GO - Biological processi

    1. apoptotic cell clearance Source: RefGenome
    2. cell redox homeostasis Source: InterPro
    3. membrane organization Source: Reactome
    4. negative regulation of apoptotic process Source: UniProtKB
    5. post-Golgi vesicle-mediated transport Source: Reactome
    6. protein folding Source: RefGenome
    7. response to endoplasmic reticulum stress Source: RefGenome

    Enzyme and pathway databases

    ReactomeiREACT_19287. Lysosome Vesicle Biogenesis.
    REACT_19400. Golgi Associated Vesicle Biogenesis.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Thioredoxin domain-containing protein 5
    Alternative name(s):
    Endoplasmic reticulum resident protein 46
    Short name:
    ER protein 46
    Short name:
    ERp46
    Thioredoxin-like protein p46
    Gene namesi
    Name:TXNDC5
    Synonyms:TLP46
    ORF Names:UNQ364/PRO700
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 6

    Organism-specific databases

    HGNCiHGNC:21073. TXNDC5.

    Subcellular locationi

    Endoplasmic reticulum lumen PROSITE-ProRule annotation

    GO - Cellular componenti

    1. endoplasmic reticulum Source: UniProtKB
    2. endoplasmic reticulum lumen Source: UniProtKB-SubCell
    3. extracellular vesicular exosome Source: UniProt
    4. lysosomal lumen Source: Reactome

    Keywords - Cellular componenti

    Endoplasmic reticulum

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA134992492.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 3232Sequence AnalysisAdd
    BLAST
    Chaini33 – 432400Thioredoxin domain-containing protein 5PRO_0000034183Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Disulfide bondi89 ↔ 92Redox-activePROSITE-ProRule annotation
    Disulfide bondi217 ↔ 220Redox-activePROSITE-ProRule annotation
    Disulfide bondi350 ↔ 353Redox-activePROSITE-ProRule annotation

    Keywords - PTMi

    Disulfide bond

    Proteomic databases

    MaxQBiQ8NBS9.
    PaxDbiQ8NBS9.
    PRIDEiQ8NBS9.

    PTM databases

    PhosphoSiteiQ8NBS9.

    Expressioni

    Gene expression databases

    BgeeiQ8NBS9.
    CleanExiHS_TXNDC5.
    GenevestigatoriQ8NBS9.

    Organism-specific databases

    HPAiHPA034677.
    HPA034678.

    Interactioni

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    PRDX4Q131622EBI-2510815,EBI-2211957

    Protein-protein interaction databases

    BioGridi123529. 37 interactions.
    DIPiDIP-53700N.
    IntActiQ8NBS9. 9 interactions.
    MINTiMINT-5006305.
    STRINGi9606.ENSP00000369081.

    Structurei

    Secondary structure

    1
    432
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi324 – 3263
    Turni329 – 3313
    Helixi332 – 3365
    Beta strandi337 – 34610
    Helixi351 – 36414
    Beta strandi374 – 3807
    Turni381 – 3833
    Helixi385 – 3906
    Beta strandi395 – 4039
    Beta strandi406 – 4116
    Helixi417 – 42711

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2DIZNMR-A323-432[»]
    3UJ1X-ray2.65A323-432[»]
    3UVTX-ray2.00A/B/C/D/E323-428[»]
    ProteinModelPortaliQ8NBS9.
    SMRiQ8NBS9. Positions 55-428.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ8NBS9.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini36 – 169134Thioredoxin 1PROSITE-ProRule annotationAdd
    BLAST
    Domaini170 – 295126Thioredoxin 2PROSITE-ProRule annotationAdd
    BLAST
    Domaini304 – 429126Thioredoxin 3PROSITE-ProRule annotationAdd
    BLAST

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi429 – 4324Prevents secretion from ERPROSITE-ProRule annotation

    Sequence similaritiesi

    Belongs to the protein disulfide isomerase family.Curated
    Contains 3 thioredoxin domains.PROSITE-ProRule annotation

    Keywords - Domaini

    Redox-active center, Repeat, Signal

    Phylogenomic databases

    eggNOGiCOG0526.
    HOGENOMiHOG000007899.
    HOVERGENiHBG058611.
    InParanoidiQ8NBS9.
    KOiK13984.
    OMAiHFVKFFA.
    OrthoDBiEOG75F4DK.
    PhylomeDBiQ8NBS9.
    TreeFamiTF106379.

    Family and domain databases

    Gene3Di3.40.30.10. 3 hits.
    InterProiIPR005788. Disulphide_isomerase.
    IPR012336. Thioredoxin-like_fold.
    IPR017937. Thioredoxin_CS.
    IPR013766. Thioredoxin_domain.
    [Graphical view]
    PfamiPF00085. Thioredoxin. 3 hits.
    [Graphical view]
    SUPFAMiSSF52833. SSF52833. 3 hits.
    TIGRFAMsiTIGR01126. pdi_dom. 1 hit.
    PROSITEiPS00014. ER_TARGET. 1 hit.
    PS00194. THIOREDOXIN_1. 3 hits.
    PS51352. THIOREDOXIN_2. 3 hits.
    [Graphical view]

    Sequences (2)i

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q8NBS9-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MPARPGRLLP LLARPAALTA LLLLLLGHGG GGRWGARAQE AAAAAADGPP    50
    AADGEDGQDP HSKHLYTADM FTHGIQSAAH FVMFFAPWCG HCQRLQPTWN 100
    DLGDKYNSME DAKVYVAKVD CTAHSDVCSA QGVRGYPTLK LFKPGQEAVK 150
    YQGPRDFQTL ENWMLQTLNE EPVTPEPEVE PPSAPELKQG LYELSASNFE 200
    LHVAQGDHFI KFFAPWCGHC KALAPTWEQL ALGLEHSETV KIGKVDCTQH 250
    YELCSGNQVR GYPTLLWFRD GKKVDQYKGK RDLESLREYV ESQLQRTETG 300
    ATETVTPSEA PVLAAEPEAD KGTVLALTEN NFDDTIAEGI TFIKFYAPWC 350
    GHCKTLAPTW EELSKKEFPG LAGVKIAEVD CTAERNICSK YSVRGYPTLL 400
    LFRGGKKVSE HSGGRDLDSL HRFVLSQAKD EL 432
    Length:432
    Mass (Da):47,629
    Last modified:April 11, 2003 - v2
    Checksum:i85E398008D6DB98C
    GO
    Isoform 2 (identifier: Q8NBS9-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         1-108: Missing.

    Note: No experimental confirmation available.

    Show »
    Length:324
    Mass (Da):36,178
    Checksum:i93FE17E484F5EFC9
    GO

    Sequence cautioni

    The sequence AAH01199.1 differs from that shown. Reason: Erroneous initiation.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti354 – 3541K → R in BAC11526. (PubMed:14702039)Curated

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei1 – 108108Missing in isoform 2. 1 PublicationVSP_045181Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY358646 mRNA. Translation: AAQ89009.1.
    AK075291 mRNA. Translation: BAC11526.1.
    AK315598 mRNA. Translation: BAG37969.1.
    AL023694 Genomic DNA. No translation available.
    AL096800 Genomic DNA. No translation available.
    AL133541 Genomic DNA. Translation: CAI19473.1.
    CH471087 Genomic DNA. Translation: EAW55221.1.
    AJ440721 mRNA. Translation: CAD29430.1.
    BC001199 mRNA. Translation: AAH01199.1. Different initiation.
    AL834423 mRNA. Translation: CAD39084.1.
    CCDSiCCDS4505.1. [Q8NBS9-1]
    CCDS47369.1. [Q8NBS9-2]
    RefSeqiNP_001139021.1. NM_001145549.2. [Q8NBS9-2]
    NP_110437.2. NM_030810.3. [Q8NBS9-1]
    UniGeneiHs.150837.

    Genome annotation databases

    EnsembliENST00000379757; ENSP00000369081; ENSG00000239264. [Q8NBS9-1]
    ENST00000473453; ENSP00000420784; ENSG00000239264. [Q8NBS9-2]
    GeneIDi81567.
    KEGGihsa:81567.
    UCSCiuc003mxv.3. human. [Q8NBS9-1]
    uc010joa.2. human.

    Polymorphism databases

    DMDMi29839560.

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY358646 mRNA. Translation: AAQ89009.1 .
    AK075291 mRNA. Translation: BAC11526.1 .
    AK315598 mRNA. Translation: BAG37969.1 .
    AL023694 Genomic DNA. No translation available.
    AL096800 Genomic DNA. No translation available.
    AL133541 Genomic DNA. Translation: CAI19473.1 .
    CH471087 Genomic DNA. Translation: EAW55221.1 .
    AJ440721 mRNA. Translation: CAD29430.1 .
    BC001199 mRNA. Translation: AAH01199.1 . Different initiation.
    AL834423 mRNA. Translation: CAD39084.1 .
    CCDSi CCDS4505.1. [Q8NBS9-1 ]
    CCDS47369.1. [Q8NBS9-2 ]
    RefSeqi NP_001139021.1. NM_001145549.2. [Q8NBS9-2 ]
    NP_110437.2. NM_030810.3. [Q8NBS9-1 ]
    UniGenei Hs.150837.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2DIZ NMR - A 323-432 [» ]
    3UJ1 X-ray 2.65 A 323-432 [» ]
    3UVT X-ray 2.00 A/B/C/D/E 323-428 [» ]
    ProteinModelPortali Q8NBS9.
    SMRi Q8NBS9. Positions 55-428.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 123529. 37 interactions.
    DIPi DIP-53700N.
    IntActi Q8NBS9. 9 interactions.
    MINTi MINT-5006305.
    STRINGi 9606.ENSP00000369081.

    PTM databases

    PhosphoSitei Q8NBS9.

    Polymorphism databases

    DMDMi 29839560.

    Proteomic databases

    MaxQBi Q8NBS9.
    PaxDbi Q8NBS9.
    PRIDEi Q8NBS9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000379757 ; ENSP00000369081 ; ENSG00000239264 . [Q8NBS9-1 ]
    ENST00000473453 ; ENSP00000420784 ; ENSG00000239264 . [Q8NBS9-2 ]
    GeneIDi 81567.
    KEGGi hsa:81567.
    UCSCi uc003mxv.3. human. [Q8NBS9-1 ]
    uc010joa.2. human.

    Organism-specific databases

    CTDi 81567.
    GeneCardsi GC06M007826.
    HGNCi HGNC:21073. TXNDC5.
    HPAi HPA034677.
    HPA034678.
    neXtProti NX_Q8NBS9.
    PharmGKBi PA134992492.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi COG0526.
    HOGENOMi HOG000007899.
    HOVERGENi HBG058611.
    InParanoidi Q8NBS9.
    KOi K13984.
    OMAi HFVKFFA.
    OrthoDBi EOG75F4DK.
    PhylomeDBi Q8NBS9.
    TreeFami TF106379.

    Enzyme and pathway databases

    Reactomei REACT_19287. Lysosome Vesicle Biogenesis.
    REACT_19400. Golgi Associated Vesicle Biogenesis.

    Miscellaneous databases

    ChiTaRSi TXNDC5. human.
    EvolutionaryTracei Q8NBS9.
    GeneWikii TXNDC5.
    GenomeRNAii 81567.
    NextBioi 71856.
    PROi Q8NBS9.

    Gene expression databases

    Bgeei Q8NBS9.
    CleanExi HS_TXNDC5.
    Genevestigatori Q8NBS9.

    Family and domain databases

    Gene3Di 3.40.30.10. 3 hits.
    InterProi IPR005788. Disulphide_isomerase.
    IPR012336. Thioredoxin-like_fold.
    IPR017937. Thioredoxin_CS.
    IPR013766. Thioredoxin_domain.
    [Graphical view ]
    Pfami PF00085. Thioredoxin. 3 hits.
    [Graphical view ]
    SUPFAMi SSF52833. SSF52833. 3 hits.
    TIGRFAMsi TIGR01126. pdi_dom. 1 hit.
    PROSITEi PS00014. ER_TARGET. 1 hit.
    PS00194. THIOREDOXIN_1. 3 hits.
    PS51352. THIOREDOXIN_2. 3 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
      Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
      , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
      Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
      Tissue: Lung.
    3. "The DNA sequence and analysis of human chromosome 6."
      Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D.
      , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.
      Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    5. Lo S.L., Nissom P.M., Ong S.E., Choong M.L., Ng S.S., Lim J.W.E., Liang R.C.M.Y., Ou K., Seow T.K., Chung M.C.M.
      Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 70-432 (ISOFORM 1).
      Tissue: Liver.
    6. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 82-432 (ISOFORM 1).
      Tissue: Eye.
    7. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 189-432 (ISOFORMS 1/2).
      Tissue: Lymph node.
    8. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    9. "The solution structure of the third thioredoxin domain of human thioredoxin domain-containing protein 5."
      RIKEN structural genomics initiative (RSGI)
      Submitted (SEP-2006) to the PDB data bank
      Cited for: STRUCTURE BY NMR OF 322-432.

    Entry informationi

    Entry nameiTXND5_HUMAN
    AccessioniPrimary (citable) accession number: Q8NBS9
    Secondary accession number(s): B2RDM2
    , Q5TCQ0, Q8ND33, Q8TCT2, Q9BVH9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 11, 2003
    Last sequence update: April 11, 2003
    Last modified: October 1, 2014
    This is version 129 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. Human chromosome 6
      Human chromosome 6: entries, gene names and cross-references to MIM
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3