ID CYAC3_HUMAN Reviewed; 242 AA. AC Q8NBI2; B3KPU2; B4DLN9; J3KQH4; Q6PK96; DT 15-JAN-2008, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2002, sequence version 1. DT 27-MAR-2024, entry version 163. DE RecName: Full=Lysosomal membrane ascorbate-dependent ferrireductase CYB561A3 {ECO:0000305}; DE EC=7.2.1.3 {ECO:0000250|UniProtKB:Q6P1H1}; DE AltName: Full=Cytochrome b ascorbate-dependent protein 3 {ECO:0000312|HGNC:HGNC:23014}; DE AltName: Full=Cytochrome b561 family member A3 {ECO:0000312|HGNC:HGNC:23014}; DE AltName: Full=Lysosomal cytochrome b {ECO:0000250|UniProtKB:Q6P1H1}; DE Short=LCytb {ECO:0000250|UniProtKB:Q6P1H1}; GN Name=CYB561A3 {ECO:0000312|HGNC:HGNC:23014}; GN Synonyms=CYBASC3 {ECO:0000312|HGNC:HGNC:23014}; ORFNames=PSEC0259; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). RC TISSUE=Blood, and Placenta; RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., RA Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., RA Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., RA Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., RA Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., RA Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., RA Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., RA Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., RA Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., RA Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., RA Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., RA Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., RA Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., RA Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., RA Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., RA Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., RA Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., RA Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., RA Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RX PubMed=16303743; DOI=10.1093/dnares/12.2.117; RA Otsuki T., Ota T., Nishikawa T., Hayashi K., Suzuki Y., Yamamoto J., RA Wakamatsu A., Kimura K., Sakamoto K., Hatano N., Kawai Y., Ishii S., RA Saito K., Kojima S., Sugiyama T., Ono T., Okano K., Yoshikawa Y., RA Aotsuka S., Sasaki N., Hattori A., Okumura K., Nagai K., Sugano S., RA Isogai T.; RT "Signal sequence and keyword trap in silico for selection of full-length RT human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA RT libraries."; RL DNA Res. 12:117-126(2005). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=16554811; DOI=10.1038/nature04632; RA Taylor T.D., Noguchi H., Totoki Y., Toyoda A., Kuroki Y., Dewar K., RA Lloyd C., Itoh T., Takeda T., Kim D.-W., She X., Barlow K.F., Bloom T., RA Bruford E., Chang J.L., Cuomo C.A., Eichler E., FitzGerald M.G., RA Jaffe D.B., LaButti K., Nicol R., Park H.-S., Seaman C., Sougnez C., RA Yang X., Zimmer A.R., Zody M.C., Birren B.W., Nusbaum C., Fujiyama A., RA Hattori M., Rogers J., Lander E.S., Sakaki Y.; RT "Human chromosome 11 DNA sequence and analysis including novel gene RT identification."; RL Nature 440:497-500(2006). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC TISSUE=Brain, Lymph, and Pancreas; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [6] RP SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS]. RC TISSUE=Placenta; RX PubMed=17897319; DOI=10.1111/j.1600-0854.2007.00643.x; RA Schroeder B., Wrocklage C., Pan C., Jaeger R., Koesters B., Schaefer H., RA Elsaesser H.-P., Mann M., Hasilik A.; RT "Integral and associated lysosomal membrane proteins."; RL Traffic 8:1676-1686(2007). CC -!- FUNCTION: Transmembrane reductase that uses ascorbate as an electron CC donor in the cytoplasm and transfers electrons across membranes to CC reduce iron cations Fe(3+) into Fe(2+) in the lumen of the late CC endosome and lysosome. Reduced iron can then be extruded from the late CC endosome and lysosome to the cytoplasm by divalent metal-specific CC transporters. It is therefore most probably involved in endosomal and CC lysosomal cellular iron homeostasis. {ECO:0000250|UniProtKB:Q6P1H1}. CC -!- CATALYTIC ACTIVITY: CC Reaction=Fe(3+)(out) + L-ascorbate(in) = Fe(2+)(out) + H(+) + CC monodehydro-L-ascorbate radical(in); Xref=Rhea:RHEA:30403, CC ChEBI:CHEBI:15378, ChEBI:CHEBI:29033, ChEBI:CHEBI:29034, CC ChEBI:CHEBI:38290, ChEBI:CHEBI:59513; EC=7.2.1.3; CC Evidence={ECO:0000250|UniProtKB:Q6P1H1}; CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:30404; CC Evidence={ECO:0000250|UniProtKB:Q6P1H1}; CC -!- COFACTOR: CC Name=heme b; Xref=ChEBI:CHEBI:60344; CC Evidence={ECO:0000250|UniProtKB:Q53TN4}; CC Note=Binds 2 heme b groups non-covalently. CC {ECO:0000250|UniProtKB:Q53TN4}; CC -!- SUBUNIT: Homodimer. {ECO:0000250|UniProtKB:Q53TN4}. CC -!- INTERACTION: CC Q8NBI2; Q9NUQ2: AGPAT5; NbExp=3; IntAct=EBI-10269179, EBI-6916385; CC Q8NBI2; Q13520: AQP6; NbExp=3; IntAct=EBI-10269179, EBI-13059134; CC Q8NBI2; P25942: CD40; NbExp=3; IntAct=EBI-10269179, EBI-525714; CC Q8NBI2; P11912: CD79A; NbExp=3; IntAct=EBI-10269179, EBI-7797864; CC Q8NBI2; O00501: CLDN5; NbExp=3; IntAct=EBI-10269179, EBI-18400628; CC Q8NBI2; O95471: CLDN7; NbExp=3; IntAct=EBI-10269179, EBI-740744; CC Q8NBI2; Q68CJ9: CREB3L3; NbExp=3; IntAct=EBI-10269179, EBI-852194; CC Q8NBI2; Q08426: EHHADH; NbExp=3; IntAct=EBI-10269179, EBI-2339219; CC Q8NBI2; O15552: FFAR2; NbExp=3; IntAct=EBI-10269179, EBI-2833872; CC Q8NBI2; Q96P66: GPR101; NbExp=3; IntAct=EBI-10269179, EBI-17935713; CC Q8NBI2; Q8TDT2: GPR152; NbExp=3; IntAct=EBI-10269179, EBI-13345167; CC Q8NBI2; O60883: GPR37L1; NbExp=3; IntAct=EBI-10269179, EBI-2927498; CC Q8NBI2; Q8TED1: GPX8; NbExp=3; IntAct=EBI-10269179, EBI-11721746; CC Q8NBI2; Q9BSE4: HERPUD2; NbExp=3; IntAct=EBI-10269179, EBI-2868124; CC Q8NBI2; P26715: KLRC1; NbExp=3; IntAct=EBI-10269179, EBI-9018187; CC Q8NBI2; Q86VI4: LAPTM4B; NbExp=3; IntAct=EBI-10269179, EBI-3267258; CC Q8NBI2; P15151: PVR; NbExp=3; IntAct=EBI-10269179, EBI-3919694; CC Q8NBI2; Q96GF1: RNF185; NbExp=3; IntAct=EBI-10269179, EBI-2340249; CC Q8NBI2; Q99942: RNF5; NbExp=6; IntAct=EBI-10269179, EBI-348482; CC Q8NBI2; Q3SXP7: SHISAL1; NbExp=3; IntAct=EBI-10269179, EBI-18037857; CC Q8NBI2; Q96CE8: TM4SF18; NbExp=3; IntAct=EBI-10269179, EBI-13351685; CC -!- SUBCELLULAR LOCATION: Late endosome membrane CC {ECO:0000250|UniProtKB:Q6P1H1}; Multi-pass membrane protein CC {ECO:0000250|UniProtKB:Q53TN4}. Lysosome membrane CC {ECO:0000269|PubMed:17897319}; Multi-pass membrane protein CC {ECO:0000250|UniProtKB:Q53TN4}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q8NBI2-1; Sequence=Displayed; CC Name=2; CC IsoId=Q8NBI2-2; Sequence=VSP_047358; CC -!- PTM: N-glycosylated. {ECO:0000250|UniProtKB:Q6P1H1}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AK056751; BAG51804.1; -; mRNA. DR EMBL; AK075559; BAC11698.1; -; mRNA. DR EMBL; AK297084; BAG59601.1; -; mRNA. DR EMBL; AP003108; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CH471076; EAW73941.1; -; Genomic_DNA. DR EMBL; CH471076; EAW73942.1; -; Genomic_DNA. DR EMBL; BC004391; AAH04391.1; -; mRNA. DR EMBL; BC014045; AAH14045.2; -; mRNA. DR EMBL; BC047710; AAH47710.1; -; mRNA. DR CCDS; CCDS53639.1; -. [Q8NBI2-2] DR CCDS; CCDS8004.1; -. [Q8NBI2-1] DR RefSeq; NP_001154924.1; NM_001161452.1. [Q8NBI2-1] DR RefSeq; NP_001154926.1; NM_001161454.1. [Q8NBI2-2] DR RefSeq; NP_001287692.1; NM_001300763.1. DR RefSeq; NP_705839.3; NM_153611.4. [Q8NBI2-1] DR AlphaFoldDB; Q8NBI2; -. DR SMR; Q8NBI2; -. DR BioGRID; 128617; 24. DR IntAct; Q8NBI2; 21. DR STRING; 9606.ENSP00000389745; -. DR GlyCosmos; Q8NBI2; 1 site, No reported glycans. DR GlyGen; Q8NBI2; 1 site. DR BioMuta; CYB561A3; -. DR DMDM; 74730147; -. DR jPOST; Q8NBI2; -. DR MassIVE; Q8NBI2; -. DR MaxQB; Q8NBI2; -. DR PaxDb; 9606-ENSP00000389745; -. DR PeptideAtlas; Q8NBI2; -. DR ProteomicsDB; 72770; -. [Q8NBI2-1] DR Antibodypedia; 52925; 9 antibodies from 7 providers. DR DNASU; 220002; -. DR Ensembl; ENST00000294072.9; ENSP00000294072.4; ENSG00000162144.10. [Q8NBI2-1] DR Ensembl; ENST00000426130.6; ENSP00000398979.2; ENSG00000162144.10. [Q8NBI2-2] DR Ensembl; ENST00000536915.5; ENSP00000437390.1; ENSG00000162144.10. [Q8NBI2-1] DR GeneID; 220002; -. DR KEGG; hsa:220002; -. DR MANE-Select; ENST00000294072.9; ENSP00000294072.4; NM_153611.6; NP_705839.3. DR UCSC; uc001nrg.4; human. [Q8NBI2-1] DR AGR; HGNC:23014; -. DR CTD; 220002; -. DR GeneCards; CYB561A3; -. DR HGNC; HGNC:23014; CYB561A3. DR HPA; ENSG00000162144; Tissue enhanced (adrenal). DR MIM; 618757; gene. DR neXtProt; NX_Q8NBI2; -. DR OpenTargets; ENSG00000162144; -. DR PharmGKB; PA134880796; -. DR VEuPathDB; HostDB:ENSG00000162144; -. DR eggNOG; KOG1619; Eukaryota. DR GeneTree; ENSGT00950000183197; -. DR InParanoid; Q8NBI2; -. DR OMA; FKFHDMV; -. DR OrthoDB; 2877457at2759; -. DR PhylomeDB; Q8NBI2; -. DR TreeFam; TF314222; -. DR PathwayCommons; Q8NBI2; -. DR SignaLink; Q8NBI2; -. DR BioGRID-ORCS; 220002; 23 hits in 1157 CRISPR screens. DR ChiTaRS; CYB561A3; human. DR GenomeRNAi; 220002; -. DR Pharos; Q8NBI2; Tdark. DR PRO; PR:Q8NBI2; -. DR Proteomes; UP000005640; Chromosome 11. DR RNAct; Q8NBI2; Protein. DR Bgee; ENSG00000162144; Expressed in right adrenal gland and 176 other cell types or tissues. DR ExpressionAtlas; Q8NBI2; baseline and differential. DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IDA:HPA. DR GO; GO:0031902; C:late endosome membrane; ISS:UniProtKB. DR GO; GO:0005765; C:lysosomal membrane; HDA:UniProtKB. DR GO; GO:0005730; C:nucleolus; IDA:HPA. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0016491; F:oxidoreductase activity; IBA:GO_Central. DR GO; GO:0140571; F:transmembrane ascorbate ferrireductase activity; ISS:UniProtKB. DR GO; GO:0006879; P:intracellular iron ion homeostasis; ISS:UniProtKB. DR CDD; cd08762; Cyt_b561_CYBASC3; 1. DR Gene3D; 1.20.120.1770; -; 1. DR InterPro; IPR043205; CYB561/CYBRD1-like. DR InterPro; IPR006593; Cyt_b561/ferric_Rdtase_TM. DR PANTHER; PTHR10106; CYTOCHROME B561-RELATED; 1. DR PANTHER; PTHR10106:SF0; LYSOSOMAL MEMBRANE ASCORBATE-DEPENDENT FERRIREDUCTASE CYB561A3; 1. DR Pfam; PF03188; Cytochrom_B561; 1. DR SMART; SM00665; B561; 1. DR PROSITE; PS50939; CYTOCHROME_B561; 1. DR Genevisible; Q8NBI2; HS. PE 1: Evidence at protein level; KW Alternative splicing; Electron transport; Endosome; Glycoprotein; Heme; KW Iron; Lysosome; Membrane; Metal-binding; Oxidoreductase; KW Reference proteome; Translocase; Transmembrane; Transmembrane helix; KW Transport. FT CHAIN 1..242 FT /note="Lysosomal membrane ascorbate-dependent FT ferrireductase CYB561A3" FT /id="PRO_0000314838" FT TOPO_DOM 1..7 FT /note="Cytoplasmic" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT TRANSMEM 8..28 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 29..45 FT /note="Lumenal" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT TRANSMEM 46..66 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 67..83 FT /note="Cytoplasmic" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT TRANSMEM 84..104 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 105..119 FT /note="Lumenal" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT TRANSMEM 120..140 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 141..154 FT /note="Cytoplasmic" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT TRANSMEM 155..175 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 176..202 FT /note="Lumenal" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT TRANSMEM 203..223 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 224..242 FT /note="Cytoplasmic" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT DOMAIN 12..219 FT /note="Cytochrome b561" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00242" FT BINDING 47 FT /ligand="heme b" FT /ligand_id="ChEBI:CHEBI:60344" FT /ligand_label="1" FT /ligand_part="Fe" FT /ligand_part_id="ChEBI:CHEBI:18248" FT /note="axial binding residue" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT BINDING 67 FT /ligand="heme b" FT /ligand_id="ChEBI:CHEBI:60344" FT /ligand_label="2" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT BINDING 76 FT /ligand="L-ascorbate" FT /ligand_id="ChEBI:CHEBI:38290" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT BINDING 80 FT /ligand="L-ascorbate" FT /ligand_id="ChEBI:CHEBI:38290" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT BINDING 83 FT /ligand="heme b" FT /ligand_id="ChEBI:CHEBI:60344" FT /ligand_label="2" FT /ligand_part="Fe" FT /ligand_part_id="ChEBI:CHEBI:18248" FT /note="axial binding residue" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT BINDING 112..115 FT /ligand="heme b" FT /ligand_id="ChEBI:CHEBI:60344" FT /ligand_label="1" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT BINDING 117 FT /ligand="heme b" FT /ligand_id="ChEBI:CHEBI:60344" FT /ligand_label="1" FT /ligand_part="Fe" FT /ligand_part_id="ChEBI:CHEBI:18248" FT /note="axial binding residue" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT BINDING 149 FT /ligand="L-ascorbate" FT /ligand_id="ChEBI:CHEBI:38290" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT BINDING 156 FT /ligand="heme b" FT /ligand_id="ChEBI:CHEBI:60344" FT /ligand_label="2" FT /ligand_part="Fe" FT /ligand_part_id="ChEBI:CHEBI:18248" FT /note="axial binding residue" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT BINDING 177 FT /ligand="heme b" FT /ligand_id="ChEBI:CHEBI:60344" FT /ligand_label="1" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT BINDING 224 FT /ligand="heme b" FT /ligand_id="ChEBI:CHEBI:60344" FT /ligand_label="2" FT /evidence="ECO:0000250|UniProtKB:Q53TN4" FT CARBOHYD 38 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT VAR_SEQ 1 FT /note="M -> MGKNFSDSFLSRECVIRM (in isoform 2)" FT /evidence="ECO:0000303|PubMed:14702039" FT /id="VSP_047358" FT CONFLICT 122 FT /note="I -> T (in Ref. 5; AAH04391)" FT /evidence="ECO:0000305" FT CONFLICT 168 FT /note="I -> N (in Ref. 1; BAG59601)" FT /evidence="ECO:0000305" SQ SEQUENCE 242 AA; 27214 MW; 1D0C4904CEAED747 CRC64; MVSGRFYLSC LLLGSLGSMC ILFTIYWMQY WRGGFAWNGS IYMFNWHPVL MVAGMVVFYG GASLVYRLPQ SWVGPKLPWK LLHAALHLMA FVLTVVGLVA VFTFHNHGRT ANLYSLHSWL GITTVFLFAC QWFLGFAVFL LPWASMWLRS LLKPIHVFFG AAILSLSIAS VISGINEKLF FSLKNTTRPY HSLPSEAVFA NSTGMLVVAF GLLVLYILLA SSWKRPEPGI LTDRQPLLHD GE //