Q8N726 (CD2A2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
April 3, 2013.
Version 103.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Cyclin-dependent kinase inhibitor 2A, isoform 4 Alternative name(s): p14ARF p19ARF | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 132 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Capable of inducing cell cycle arrest in G1 and G2 phases. Acts as a tumor suppressor. Binds to MDM2 and blocks its nucleocytoplasmic shuttling by sequestering it in the nucleolus. This inhibits the oncogenic action of MDM2 by blocking MDM2-induced degradation of p53 and enhancing p53-dependent transactivation and apoptosis. Also induces G2 arrest and apoptosis in a p53-independent manner by preventing the activation of cyclin B1/CDC2 complexes. Binds to BCL6 and down-regulates BCL6-induced transcriptional repression. Binds to E2F1 and MYC and blocks their transcriptional activator activity but has no effect on MYC transcriptional repression. Binds to TOP1/TOPOI and stimulates its activity. This complex binds to rRNA gene promoters and may play a role in rRNA transcription and/or maturation. Interacts with NPM1/B23 and promotes its polyubiquitination and degradation, thus inhibiting rRNA processing. Interacts with COMMD1 and promotes its 'Lys63'-linked polyubiquitination. Interacts with UBE2I/UBC9 and enhances sumoylation of a number of its binding partners including MDM2 and E2F1. Binds to HUWE1 and represses its ubiquitin ligase activity. May play a role in controlling cell proliferation and apoptosis during mammary gland development. Isoform 6 may be involved in regulation of autophagy and caspase-independent cell death; the short-lived mitochondrial isoform is stabilized by C1QBP. Ref.9 Ref.10 Ref.11 Ref.15 Ref.16 Ref.17 Ref.18 Ref.19 Ref.20 Ref.24 UniProtKB Q64364 |
| Subunit structure | Does not interact with cyclins, CDK1, CDK2, CDK4, CDK5 or CDK6. Binds to BCL6, E2F1, HUWE1, MDM2, MYC, NPM1/B23, TOP1/TOPOI and UBE2I/UBC9. Interacts with TBRG1 and COMMD1. Interacts with CDKN2AIP and E4F1. Isoform 6 interacts with C1QBP. Ref.9 Ref.10 Ref.11 Ref.12 Ref.13 Ref.14 Ref.15 Ref.17 Ref.18 Ref.19 Ref.20 Ref.22 Ref.23 Ref.24 |
| Subcellular location | Nucleus › nucleolus. Nucleus › nucleoplasm Ref.21 Ref.24. Isoform 6: Mitochondrion Ref.21 Ref.24. |
| Post-translational modification | Ubiquitinated in normal cells by TRIP12 via the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination at the N-terminus, regardeless of the absence of lysine residues. Ubiquitination leads to its degradation. In cancer cells, however, TRIP12 is located in a different cell compartment, preventing ubiquitination and degradation. Ref.25 |
| Sequence caution | The sequence AAB01737.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence AAC60649.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence AAH15960.3 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence AAH21998.3 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence AAM77919.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence CAH70601.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence EAW58600.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence EAW58601.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| C1QBP | Q07021 | 3 | EBI-625922,EBI-347528 | |
| DAXX | Q9UER7 | 8 | EBI-625922,EBI-77321 | |
| EBNA-LP | Q8AZK7 | 5 | EBI-625922,EBI-1185167 | From a different organism. |
| HUWE1 | Q7Z6Z7 | 4 | EBI-625922,EBI-625934 | |
| MDM2 | Q00987 | 3 | EBI-625922,EBI-389668 |
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] Note: Isoform 1 and isoform 4 arise due to the use of two alternative first exons joined to a common exon 2 at the same acceptor site but in different reading frames, resulting in two completely different isoforms. | ||||||
| Isoform 4 Ref.1 (identifier: Q8N726-1) Also known as: p14ARF; p19ARF; ARF; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 1 Ref.20 (identifier: P42771-1) Also known as: p16INK4a; The sequence of this isoform can be found in the external entry P42771. Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly. | ||||||
| Isoform 2 Ref.20 (identifier: P42771-2) The sequence of this isoform can be found in the external entry P42771. Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly. | ||||||
| Isoform 3 Ref.20 (identifier: P42771-3) Also known as: p12; The sequence of this isoform can be found in the external entry P42771. Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly. | ||||||
| Isoform 5 (identifier: P42771-4) Also known as: p16gamma; The sequence of this isoform can be found in the external entry P42771. Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly. | ||||||
| Note: Barely detectable in non-tumor cells. | ||||||
| Isoform 6 (identifier: Q8N726-2) Also known as: smARF; The sequence of this isoform differs from the canonical sequence as follows: 1-47: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 132 | 132 | Cyclin-dependent kinase inhibitor 2A, isoform 4 | PRO_0000144180 | |||||
Natural variations | |||||||||
| Alternative sequence | 1 – 47 | 47 | Missing in isoform 6. | VSP_044962 | |||||
| Natural variant | 17 | 1 | P → S. Ref.3 Corresponds to variant rs3731190 [ dbSNP | Ensembl ]. | VAR_029287 | |||||
| Natural variant | 106 | 1 | G → R. Corresponds to variant rs4987127 [ dbSNP | Ensembl ]. | VAR_053033 | |||||
| Natural variant | 113 | 1 | P → L. Corresponds to variant rs34886500 [ dbSNP | Ensembl ]. | VAR_053034 | |||||
| Natural variant | 116 | 1 | G → D. Corresponds to variant rs35741010 [ dbSNP | Ensembl ]. | VAR_053035 | |||||
Experimental info | |||||||||
| Sequence conflict | 28 – 30 | 3 | PRL → SWF in AAH15960. Ref.6 | ||||||
| Sequence conflict | 28 – 30 | 3 | PRL → SWF in AAH21998. Ref.6 | ||||||
| Sequence conflict | 28 – 30 | 3 | PRL → SWF in AAP35666. Ref.7 | ||||||
| Sequence conflict | 94 | 1 | P → L in AAB01737. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Complex structure and regulation of the P16 (MTS1) locus." Stone S., Jiang P., Dayananth P., Tavtigian S.V., Katcher H., Parry D., Peters G., Kamb A. Cancer Res. 55:2988-2994(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [2] | "mRNA isoform with alternate first exon-encoded sequences at the cyclin-dependent kinase inhibitor 2 (p16INK4/MTS1) locus and mapping analysis of the region by using long-PCR." Linnenbach A.J. Submitted (OCT-1995) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [3] | NIEHS SNPs program Submitted (JUL-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT SER-17. |
| [4] | "DNA sequence and analysis of human chromosome 9." Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S., Babbage A.K., Babbage S., Bagguley C.L. Dunham I.Nature 429:369-374(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Skin. |
| [7] | "A new type of p16INK4/MTS1 gene transcript expressed in B-cell malignancies." Duro D., Bernard O., Della Valle V., Berger R., Larsen C.J. Oncogene 11:21-29(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Hematopoietic. |
| [8] | "Cloning of human full-length CDSs in BD Creator(TM) system donor vector." Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., Phelan M., Farmer A. Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. |
| [9] | "The alternative product from the human CDKN2A locus, p14(ARF), participates in a regulatory feedback loop with p53 and MDM2." Stott F.J., Bates S., James M.C., McConnell B.B., Starborg M., Brookes S., Palmero I., Ryan K., Hara E., Vousden K.H., Peters G. EMBO J. 17:5001-5014(1998) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH MDM2. |
| [10] | "Human ARF protein interacts with topoisomerase I and stimulates its activity." Karayan L., Riou J.-F., Seite P., Migeon J., Cantereau A., Larsen C.-J. Oncogene 20:836-848(2001) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH TOP1. |
| [11] | "Human ARF binds E2F1 and inhibits its transcriptional activity." Eymin B., Karayan L., Seite P., Brambilla C., Brambilla E., Larsen C.-J., Gazzeri S. Oncogene 20:1033-1041(2001) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH E2F1. |
| [12] | "CARF is a novel protein that cooperates with mouse p19ARF (human p14ARF) in activating p53." Hasan M.K., Yaguchi T., Sugihara T., Kumar P.K.R., Taira K., Reddel R.R., Kaul S.C., Wadhwa R. J. Biol. Chem. 277:37765-37770(2002) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH CDKN2AIP. |
| [13] | "A novel putative collaborator of p19ARF." Wadhwa R., Sugihara T., Hasan M.K., Duncan E.L., Taira K., Kaul S.C. Exp. Gerontol. 38:245-252(2003) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH CDKN2AIP. |
| [14] | "Association of p14ARF with the p120E4F transcriptional repressor enhances cell cycle inhibition." Rizos H., Diefenbach E., Badhwar P., Woodruff S., Becker T.M., Rooney R.J., Kefford R.F. J. Biol. Chem. 278:4981-4989(2003) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH E4F1. |
| [15] | "Tumor suppressor ARF degrades B23, a nucleolar protein involved in ribosome biogenesis and cell proliferation." Itahana K., Bhat K.P., Jin A., Itahana Y., Hawke D., Kobayashi R., Zhang Y. Mol. Cell 12:1151-1164(2003) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH NPM1. |
| [16] | "p14ARF induces G2 arrest and apoptosis independently of p53 leading to regression of tumours established in nude mice." Eymin B., Leduc C., Coll J.-L., Brambilla E., Gazzeri S. Oncogene 22:1822-1835(2003) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [17] | "Human Arf tumor suppressor specifically interacts with chromatin containing the promoter of rRNA genes." Ayrault O., Andrique L., Larsen C.-J., Seite P. Oncogene 23:8097-8104(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH TOP1. |
| [18] | "The ARF tumor suppressor inhibits BCL6-mediated transcriptional repression." Suzuki H., Kurita M., Mizumoto K., Moriyama M., Aiso S., Nishimoto I., Matsuoka M. Biochem. Biophys. Res. Commun. 326:242-248(2005) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH BCL6. |
| [19] | "ARF-BP1/Mule is a critical mediator of the ARF tumor suppressor." Chen D., Kon N., Li M., Zhang W., Qin J., Gu W. Cell 121:1071-1083(2005) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH HUWE1. |
| [20] | "p14ARF interacts with the SUMO-conjugating enzyme Ubc9 and promotes the sumoylation of its binding partners." Rizos H., Woodruff S., Kefford R.F. Cell Cycle 4:597-603(2005) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH UBE2I. |
| [21] | "A short mitochondrial form of p19ARF induces autophagy and caspase-independent cell death." Reef S., Zalckvar E., Shifman O., Bialik S., Sabanay H., Oren M., Kimchi A. Mol. Cell 22:463-475(2006) [PubMed] [Europe PMC] [Abstract] Cited for: ALTERNATIVE SPLICING (ISOFORM 6), SUBCELLULAR LOCATION (ISOFORM 6). |
| [22] | "A novel nuclear interactor of ARF and MDM2 (NIAM) that maintains chromosomal stability." Tompkins V.S., Hagen J., Frazier A.A., Lushnikova T., Fitzgerald M.P., di Tommaso A.D., Ladeveze V., Domann F.E., Eischen C.M., Quelle D.E. J. Biol. Chem. 282:1322-1333(2007) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH TBRG1. |
| [23] | "The autophagic inducer smARF interacts with and is stabilized by the mitochondrial p32 protein." Reef S., Shifman O., Oren M., Kimchi A. Oncogene 26:6677-6683(2007) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH C1QBP. |
| [24] | "Tumor suppressor ARF promotes non-classic proteasome-independent polyubiquitination of COMMD1." Huang Y., Wu M., Li H.Y. J. Biol. Chem. 283:11453-11460(2008) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH COMMD1, FUNCTION, SUBCELLULAR LOCATION. |
| [25] | "Transcription-independent ARF regulation in oncogenic stress-mediated p53 responses." Chen D., Shan J., Zhu W.G., Qin J., Gu W. Nature 464:624-627(2010) [PubMed] [Europe PMC] [Abstract] Cited for: UBIQUITINATION BY TRIP12. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | S78535 mRNA. Translation: AAC60649.1. Different initiation. U38945 mRNA. Translation: AAB01737.1. Different initiation. AF527803 Genomic DNA. Translation: AAM77919.1. Different initiation. AL449423 Genomic DNA. Translation: CAH70601.1. Different initiation. CH471071 Genomic DNA. Translation: EAW58600.1. Different initiation. CH471071 Genomic DNA. Translation: EAW58601.1. Different initiation. BC015960 mRNA. Translation: AAH15960.3. Different initiation. BC021998 mRNA. Translation: AAH21998.3. Different initiation. U26727 mRNA. Translation: AAA82236.1. BT007020 mRNA. Translation: AAP35666.1. |
| IPI | IPI00478390. |
| PIR | I39004. |
| RefSeq | NP_478102.2. NM_058195.3. |
| UniGene | Hs.512599. |
3D structure databases | |
| ProteinModelPortal | Q8N726. |
| SMR | Q8N726. Positions 1-37. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-24171N. |
| IntAct | Q8N726. 14 interactions. |
| MINT | MINT-2502129. |
Polymorphism databases | |
| DMDM | 74751077. |
Proteomic databases | |
| PaxDb | Q8N726. |
| PeptideAtlas | Q8N726. |
| PRIDE | Q8N726. |
Protocols and materials databases | |
| DNASU | 1029. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000361570; ENSP00000355153; ENSG00000147889. ENST00000530628; ENSP00000432664; ENSG00000147889. ENST00000579755; ENSP00000462950; ENSG00000147889. |
| GeneID | 1029. |
| KEGG | hsa:1029. |
| UCSC | uc003zpl.3. human. |
Organism-specific databases | |
| CTD | 1029. |
| GeneCards | GC09M021957. |
| HGNC | HGNC:1787. CDKN2A. |
| HPA | CAB000093. CAB000445. CAB018232. |
| MIM | 600160. gene. |
| neXtProt | NX_Q8N726. |
| Orphanet | 618. Familial melanoma. 1333. Familial pancreatic carcinoma. 252206. Melanoma neural system tumor syndrome. 51013. Melanoma-pancreatic cancer syndrome. 99860. Precursor B-cell acute lymphoblastic leukemia. 99861. Precursor T-cell acute lymphoblastic leukemia. |
| PharmGKB | PA106. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG42176. |
| HOGENOM | HOG000111485. |
| HOVERGEN | HBG071056. |
| InParanoid | Q8N726. |
| KO | K06621. |
Enzyme and pathway databases | |
| Pathway_Interaction_DB | pi3kciaktpathway. Class I PI3K signaling events mediated by Akt. foxm1pathway. FOXM1 transcription factor network. hif1apathway. Hypoxic and oxygen homeostasis regulation of HIF-1-alpha. |
Gene expression databases | |
| ArrayExpress | Q8N726. |
| Bgee | Q8N726. |
| CleanEx | HS_CDKN2A. |
| Genevestigator | Q8N726. |
| GermOnline | ENSG00000147889. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR010868. Cyclin_kinase-Inhib_2A. [Graphical view] |
| PANTHER | PTHR21414. PTHR21414. 1 hit. |
| Pfam | PF07392. P19Arf_N. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 1029. |
| NextBio | 4323. |
| SOURCE | Search... |
Entry information
| Entry name | CD2A2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q8N726 Secondary accession number(s): D3DRK2 Q7KZR9 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 9 Human chromosome 9: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |

Clusters with
