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Q8N4M1

- CTL3_HUMAN

UniProt

Q8N4M1 - CTL3_HUMAN

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Protein
Choline transporter-like protein 3
Gene
SLC44A3, CTL3, UNQ558/PRO1115
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  1. glycerophospholipid biosynthetic process Source: Reactome
  2. phosphatidylcholine biosynthetic process Source: Reactome
  3. phospholipid metabolic process Source: Reactome
  4. small molecule metabolic process Source: Reactome
  5. transmembrane transport Source: Reactome
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_121238. Synthesis of PC.
REACT_19305. Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds.

Protein family/group databases

TCDBi2.A.92.1.3. the choline transporter-like (ctl) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Choline transporter-like protein 3
Alternative name(s):
Solute carrier family 44 member 3
Gene namesi
Name:SLC44A3
Synonyms:CTL3
ORF Names:UNQ558/PRO1115
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 1

Organism-specific databases

HGNCiHGNC:28689. SLC44A3.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei34 – 5421Helical; Reviewed prediction
Add
BLAST
Transmembranei213 – 23321Helical; Reviewed prediction
Add
BLAST
Transmembranei243 – 26321Helical; Reviewed prediction
Add
BLAST
Transmembranei284 – 30421Helical; Reviewed prediction
Add
BLAST
Transmembranei334 – 35421Helical; Reviewed prediction
Add
BLAST
Transmembranei384 – 40421Helical; Reviewed prediction
Add
BLAST
Transmembranei534 – 55421Helical; Reviewed prediction
Add
BLAST
Transmembranei563 – 58321Helical; Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: Reactome
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA142670900.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 653653Choline transporter-like protein 3
PRO_0000191720Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi136 – 1361N-linked (GlcNAc...) Reviewed prediction
Glycosylationi151 – 1511N-linked (GlcNAc...) Reviewed prediction
Glycosylationi412 – 4121N-linked (GlcNAc...) Reviewed prediction
Glycosylationi503 – 5031N-linked (GlcNAc...) Reviewed prediction
Glycosylationi521 – 5211N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Glycoprotein

Proteomic databases

MaxQBiQ8N4M1.
PaxDbiQ8N4M1.
PRIDEiQ8N4M1.

PTM databases

PhosphoSiteiQ8N4M1.

Expressioni

Gene expression databases

ArrayExpressiQ8N4M1.
BgeeiQ8N4M1.
CleanExiHS_SLC44A3.
GenevestigatoriQ8N4M1.

Organism-specific databases

HPAiHPA047433.

Interactioni

Protein-protein interaction databases

BioGridi126026. 1 interaction.
STRINGi9606.ENSP00000271227.

Structurei

3D structure databases

ProteinModelPortaliQ8N4M1.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi477 – 4848Cys-rich

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG310633.
HOGENOMiHOG000231655.
HOVERGENiHBG080361.
InParanoidiQ8N4M1.
KOiK15282.
OMAiCTDTAWL.
OrthoDBiEOG72JWFP.
PhylomeDBiQ8N4M1.
TreeFamiTF313325.

Family and domain databases

InterProiIPR007603. Choline_transptr-like.
[Graphical view]
PANTHERiPTHR12385. PTHR12385. 1 hit.
PfamiPF04515. Choline_transpo. 1 hit.
[Graphical view]

Sequences (6)i

Sequence statusi: Complete.

This entry describes 6 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q8N4M1-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MHCLGAEYLV SAEGAPRQRE WRPQIYRKCT DTAWLFLFFL FWTGLVFIMG    50
YSVVAGAAGR LLFGYDSFGN MCGKKNSPVE GAPLSGQDMT LKKHVFFMNS 100
CNLEVKGTQL NRMALCVSNC PEEQLDSLEE VQFFANTSGS FLCVYSLNSF 150
NYTHSPKADS LCPRLPVPPS KSFPLFNRCV PQTPECYSLF ASVLINDVDT 200
LHRILSGIMS GRDTILGLCI LALALSLAMM FTFRFITTLL VHIFISLVIL 250
GLLFVCGVLW WLYYDYTNDL SIELDTEREN MKCVLGFAIV STGITAVLLV 300
LIFVLRKRIK LTVELFQITN KAISSAPFLL FQPLWTFAIL IFFWVLWVAV 350
LLSLGTAGAA QVMEGGQVEY KPLSGIRYMW SYHLIGLIWT SEFILACQQM 400
TIAGAVVTCY FNRSKNDPPD HPILSSLSIL FFYHQGTVVK GSFLISVVRI 450
PRIIVMYMQN ALKEQQHGAL SRYLFRCCYC CFWCLDKYLL HLNQNAYTTT 500
AINGTDFCTS AKDAFKILSK NSSHFTSINC FGDFIIFLGK VLVVCFTVFG 550
GLMAFNYNRA FQVWAVPLLL VAFFAYLVAH SFLSVFETVL DALFLCFAVD 600
LETNDGSSEK PYFMDQEFLS FVKRSNKLNN ARAQQDKHSL RNEEGTELQA 650
IVR 653
Length:653
Mass (Da):73,783
Last modified:September 22, 2009 - v4
Checksum:i083859F3FC332382
GO
Isoform 2 (identifier: Q8N4M1-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-48: Missing.

Show »
Length:605
Mass (Da):68,033
Checksum:i4D3A762E69E3BB24
GO
Isoform 3 (identifier: Q8N4M1-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     11-46: Missing.

Show »
Length:617
Mass (Da):69,410
Checksum:i2E5CE3201DEB5EE2
GO
Isoform 4 (identifier: Q8N4M1-4) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     11-46: Missing.
     107-138: Missing.

Note: No experimental confirmation available.

Show »
Length:585
Mass (Da):65,853
Checksum:iEB0DF13AC1E723B7
GO
Isoform 5 (identifier: Q8N4M1-5) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-48: Missing.
     107-138: Missing.
     465-465: Missing.

Note: No experimental confirmation available.

Show »
Length:572
Mass (Da):64,348
Checksum:i4DDA14D76622D2A2
GO
Isoform 6 (identifier: Q8N4M1-6) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     107-138: Missing.
     465-465: Missing.

Note: No experimental confirmation available.

Show »
Length:620
Mass (Da):70,098
Checksum:iD18ABAFA2ECD4B5C
GO

Sequence cautioni

The sequence AAH33858.2 differs from that shown. Reason: Erroneous initiation.
The sequence AAQ89022.1 differs from that shown. Reason: Erroneous initiation.

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti438 – 4381V → I.2 Publications
Corresponds to variant rs859098 [ dbSNP | Ensembl ].
VAR_023405
Natural varianti441 – 4411G → W Found in a renal cell carcinoma sample; somatic mutation. 1 Publication
VAR_064752

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 4848Missing in isoform 2 and isoform 5.
VSP_036151Add
BLAST
Alternative sequencei11 – 4636Missing in isoform 3 and isoform 4.
VSP_036152Add
BLAST
Alternative sequencei107 – 13832Missing in isoform 4, isoform 5 and isoform 6.
VSP_044713Add
BLAST
Alternative sequencei465 – 4651Missing in isoform 5 and isoform 6.
VSP_045974

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti3 – 31C → R in BAG62846. 1 Publication
Sequence conflicti316 – 3161F → L in BAG62846. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK303906 mRNA. Translation: BAG64836.1.
AK301288 mRNA. Translation: BAG62846.1.
AK316123 mRNA. Translation: BAH14494.1.
AC093429 Genomic DNA. No translation available.
AL359554 Genomic DNA. Translation: CAC36091.1.
BC033858 mRNA. Translation: AAH33858.2. Different initiation.
BC053877 mRNA. Translation: AAH53877.1.
AY358659 mRNA. Translation: AAQ89022.1. Different initiation.
CCDSiCCDS44176.1. [Q8N4M1-1]
CCDS58011.1. [Q8N4M1-6]
CCDS58012.1. [Q8N4M1-4]
CCDS58013.1. [Q8N4M1-3]
CCDS751.1. [Q8N4M1-2]
RefSeqiNP_001107578.1. NM_001114106.2. [Q8N4M1-1]
NP_001245269.1. NM_001258340.1.
NP_001245270.1. NM_001258341.1. [Q8N4M1-6]
NP_001245271.1. NM_001258342.1. [Q8N4M1-3]
NP_001245272.1. NM_001258343.1. [Q8N4M1-4]
NP_689582.2. NM_152369.4. [Q8N4M1-2]
XP_005270498.1. XM_005270441.1. [Q8N4M1-2]
UniGeneiHs.483423.

Genome annotation databases

EnsembliENST00000271227; ENSP00000271227; ENSG00000143036. [Q8N4M1-1]
ENST00000446120; ENSP00000389143; ENSG00000143036. [Q8N4M1-3]
ENST00000467909; ENSP00000432789; ENSG00000143036. [Q8N4M1-2]
ENST00000527077; ENSP00000433641; ENSG00000143036. [Q8N4M1-4]
ENST00000529450; ENSP00000431836; ENSG00000143036. [Q8N4M1-6]
GeneIDi126969.
KEGGihsa:126969.
UCSCiuc001dqv.5. human. [Q8N4M1-1]
uc010otr.3. human. [Q8N4M1-3]

Polymorphism databases

DMDMi259016387.

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK303906 mRNA. Translation: BAG64836.1 .
AK301288 mRNA. Translation: BAG62846.1 .
AK316123 mRNA. Translation: BAH14494.1 .
AC093429 Genomic DNA. No translation available.
AL359554 Genomic DNA. Translation: CAC36091.1 .
BC033858 mRNA. Translation: AAH33858.2 . Different initiation.
BC053877 mRNA. Translation: AAH53877.1 .
AY358659 mRNA. Translation: AAQ89022.1 . Different initiation.
CCDSi CCDS44176.1. [Q8N4M1-1 ]
CCDS58011.1. [Q8N4M1-6 ]
CCDS58012.1. [Q8N4M1-4 ]
CCDS58013.1. [Q8N4M1-3 ]
CCDS751.1. [Q8N4M1-2 ]
RefSeqi NP_001107578.1. NM_001114106.2. [Q8N4M1-1 ]
NP_001245269.1. NM_001258340.1.
NP_001245270.1. NM_001258341.1. [Q8N4M1-6 ]
NP_001245271.1. NM_001258342.1. [Q8N4M1-3 ]
NP_001245272.1. NM_001258343.1. [Q8N4M1-4 ]
NP_689582.2. NM_152369.4. [Q8N4M1-2 ]
XP_005270498.1. XM_005270441.1. [Q8N4M1-2 ]
UniGenei Hs.483423.

3D structure databases

ProteinModelPortali Q8N4M1.
ModBasei Search...

Protein-protein interaction databases

BioGridi 126026. 1 interaction.
STRINGi 9606.ENSP00000271227.

Chemistry

DrugBanki DB00122. Choline.

Protein family/group databases

TCDBi 2.A.92.1.3. the choline transporter-like (ctl) family.

PTM databases

PhosphoSitei Q8N4M1.

Polymorphism databases

DMDMi 259016387.

Proteomic databases

MaxQBi Q8N4M1.
PaxDbi Q8N4M1.
PRIDEi Q8N4M1.

Protocols and materials databases

DNASUi 126969.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000271227 ; ENSP00000271227 ; ENSG00000143036 . [Q8N4M1-1 ]
ENST00000446120 ; ENSP00000389143 ; ENSG00000143036 . [Q8N4M1-3 ]
ENST00000467909 ; ENSP00000432789 ; ENSG00000143036 . [Q8N4M1-2 ]
ENST00000527077 ; ENSP00000433641 ; ENSG00000143036 . [Q8N4M1-4 ]
ENST00000529450 ; ENSP00000431836 ; ENSG00000143036 . [Q8N4M1-6 ]
GeneIDi 126969.
KEGGi hsa:126969.
UCSCi uc001dqv.5. human. [Q8N4M1-1 ]
uc010otr.3. human. [Q8N4M1-3 ]

Organism-specific databases

CTDi 126969.
GeneCardsi GC01P095286.
H-InvDB HIX0023639.
HGNCi HGNC:28689. SLC44A3.
HPAi HPA047433.
neXtProti NX_Q8N4M1.
PharmGKBi PA142670900.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG310633.
HOGENOMi HOG000231655.
HOVERGENi HBG080361.
InParanoidi Q8N4M1.
KOi K15282.
OMAi CTDTAWL.
OrthoDBi EOG72JWFP.
PhylomeDBi Q8N4M1.
TreeFami TF313325.

Enzyme and pathway databases

Reactomei REACT_121238. Synthesis of PC.
REACT_19305. Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds.

Miscellaneous databases

ChiTaRSi SLC44A3. human.
GenomeRNAii 126969.
NextBioi 81968.
PROi Q8N4M1.

Gene expression databases

ArrayExpressi Q8N4M1.
Bgeei Q8N4M1.
CleanExi HS_SLC44A3.
Genevestigatori Q8N4M1.

Family and domain databases

InterProi IPR007603. Choline_transptr-like.
[Graphical view ]
PANTHERi PTHR12385. PTHR12385. 1 hit.
Pfami PF04515. Choline_transpo. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 3; 4 AND 5), VARIANT ILE-438.
    Tissue: Colon, Stomach and Trachea.
  2. "The DNA sequence and biological annotation of human chromosome 1."
    Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K.
    , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
    Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2), VARIANT ILE-438.
    Tissue: Brain and Colon.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 147-653.
  5. "An electric lobe suppressor for a yeast choline transport mutation belongs to a new family of transporter-like proteins."
    O'Regan S., Traiffort E., Ruat M., Cha N., Compaore D., Meunier F.-M.
    Proc. Natl. Acad. Sci. U.S.A. 97:1835-1840(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION, NOMENCLATURE.
  6. Cited for: VARIANT TRP-441.

Entry informationi

Entry nameiCTL3_HUMAN
AccessioniPrimary (citable) accession number: Q8N4M1
Secondary accession number(s): B4DVY4
, B4E1M4, B7ZA08, E9PJH2, E9PJY8, Q6UWT1, Q7Z6C5, Q9BWY7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: September 22, 2009
Last modified: September 3, 2014
This is version 97 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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