ID NIN_HUMAN Reviewed; 2090 AA. AC Q8N4C6; A6NDB8; B7WPA3; C9JSB6; C9JSG2; C9JXL2; Q5BKU3; Q6P0P6; Q9BWU6; AC Q9C012; Q9C013; Q9C014; Q9H5I6; Q9HAT7; Q9HBY5; Q9HCK7; Q9UH61; DT 19-JUL-2004, integrated into UniProtKB/Swiss-Prot. DT 02-NOV-2010, sequence version 4. DT 27-MAR-2024, entry version 185. DE RecName: Full=Ninein; DE Short=hNinein; DE AltName: Full=Glycogen synthase kinase 3 beta-interacting protein; DE Short=GSK3B-interacting protein; GN Name=NIN; Synonyms=KIAA1565; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 5), SUBCELLULAR LOCATION, TISSUE RP SPECIFICITY, INTERACTION WITH GSK3B, AND VARIANTS PRO-1125 AND GLU-1320. RC TISSUE=Fetal liver; RX PubMed=11004522; DOI=10.1016/s0167-4781(00)00127-5; RA Hong Y.-R., Chen C.-H., Chang J.-H., Wang S.-K., Sy W.-D., Chou C.-K., RA Howng S.-L.; RT "Cloning and characterization of a novel human ninein protein that RT interacts with the glycogen synthase kinase 3beta."; RL Biochim. Biophys. Acta 1492:513-516(2000). RN [2] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, AND VARIANTS RP PRO-1125 AND GLU-1320. RX PubMed=11162463; DOI=10.1006/bbrc.2000.4050; RA Hong Y.-R., Chen C.-H., Chuo M.-H., Liou S.-Y., Howng S.-L.; RT "Genomic organization and molecular characterization of the human ninein RT gene."; RL Biochem. Biophys. Res. Commun. 279:989-995(2000). RN [3] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 2 AND 4), PARTIAL NUCLEOTIDE SEQUENCE RP [MRNA] (ISOFORM 3), FUNCTION, ALTERNATIVE SPLICING, SUBCELLULAR LOCATION, RP AND VARIANTS PRO-1125 AND GLU-1320. RC TISSUE=Thymus; RX PubMed=15190203; RA Stillwell E.E., Zhou J., Joshi H.C.; RT "Human ninein is a centrosomal autoantigen recognized by CREST patient sera RT and plays a regulatory role in microtubule nucleation."; RL Cell Cycle 3:923-930(2004). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 6). RC TISSUE=Brain; RX PubMed=10997877; DOI=10.1093/dnares/7.4.271; RA Nagase T., Kikuno R., Nakayama M., Hirosawa M., Ohara O.; RT "Prediction of the coding sequences of unidentified human genes. XVIII. The RT complete sequences of 100 new cDNA clones from brain which code for large RT proteins in vitro."; RL DNA Res. 7:273-281(2000). RN [5] RP SEQUENCE REVISION. RX PubMed=12168954; DOI=10.1093/dnares/9.3.99; RA Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T.; RT "Construction of expression-ready cDNA clones for KIAA genes: manual RT curation of 330 KIAA cDNA clones."; RL DNA Res. 9:99-106(2002). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=12508121; DOI=10.1038/nature01348; RA Heilig R., Eckenberg R., Petit J.-L., Fonknechten N., Da Silva C., RA Cattolico L., Levy M., Barbe V., De Berardinis V., Ureta-Vidal A., RA Pelletier E., Vico V., Anthouard V., Rowen L., Madan A., Qin S., Sun H., RA Du H., Pepin K., Artiguenave F., Robert C., Cruaud C., Bruels T., RA Jaillon O., Friedlander L., Samson G., Brottier P., Cure S., Segurens B., RA Aniere F., Samain S., Crespeau H., Abbasi N., Aiach N., Boscus D., RA Dickhoff R., Dors M., Dubois I., Friedman C., Gouyvenoux M., James R., RA Madan A., Mairey-Estrada B., Mangenot S., Martins N., Menard M., Oztas S., RA Ratcliffe A., Shaffer T., Trask B., Vacherie B., Bellemere C., Belser C., RA Besnard-Gonnet M., Bartol-Mavel D., Boutard M., Briez-Silla S., RA Combette S., Dufosse-Laurent V., Ferron C., Lechaplais C., Louesse C., RA Muselet D., Magdelenat G., Pateau E., Petit E., Sirvain-Trukniewicz P., RA Trybou A., Vega-Czarny N., Bataille E., Bluet E., Bordelais I., Dubois M., RA Dumont C., Guerin T., Haffray S., Hammadi R., Muanga J., Pellouin V., RA Robert D., Wunderle E., Gauguet G., Roy A., Sainte-Marthe L., Verdier J., RA Verdier-Discala C., Hillier L.W., Fulton L., McPherson J., Matsuda F., RA Wilson R., Scarpelli C., Gyapay G., Wincker P., Saurin W., Quetier F., RA Waterston R., Hood L., Weissenbach J.; RT "The DNA sequence and analysis of human chromosome 14."; RL Nature 421:601-607(2003). RN [7] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 9), NUCLEOTIDE SEQUENCE RP [LARGE SCALE MRNA] OF 1-434 (ISOFORM 8), AND NUCLEOTIDE SEQUENCE [LARGE RP SCALE MRNA] OF 1877-2090 (ISOFORM 4). RC TISSUE=Lymph; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [8] RP NUCLEOTIDE SEQUENCE [MRNA] OF 1561-2090 (ISOFORMS 1 AND 7). RC TISSUE=Bone marrow; RA Choquette M.C., de Medicis E.; RT "3' isoforms of human ninein."; RL Submitted (FEB-2001) to the EMBL/GenBank/DDBJ databases. RN [9] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1928-2090 (ISOFORM 7). RC TISSUE=Hepatoma; RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., RA Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., RA Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., RA Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., RA Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., RA Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., RA Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., RA Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., RA Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., RA Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., RA Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., RA Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., RA Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., RA Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., RA Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., RA Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., RA Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., RA Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., RA Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [10] RP FUNCTION, AND SUBCELLULAR LOCATION. RX PubMed=11956314; DOI=10.1242/jcs.115.9.1825; RA Ou Y.Y., Mack G.J., Zhang M., Rattner J.B.; RT "CEP110 and ninein are located in a specific domain of the centrosome RT associated with centrosome maturation."; RL J. Cell Sci. 115:1825-1835(2002). RN [11] RP SUBCELLULAR LOCATION. RX PubMed=12403812; DOI=10.1083/jcb.200204023; RA Dammermann A., Merdes A.; RT "Assembly of centrosomal proteins and microtubule organization depends on RT PCM-1."; RL J. Cell Biol. 159:255-266(2002). RN [12] RP HOMOOLIGOMERIZATION, SUBCELLULAR LOCATION, DEVELOPMENTAL STAGE, DOMAIN, AND RP PHOSPHORYLATION. RX PubMed=12927815; DOI=10.1016/s0006-291x(03)01510-9; RA Chen C.-H., Howng S.-L., Cheng T.-S., Chou M.-H., Huang C.-Y., Hong Y.-R.; RT "Molecular characterization of human ninein protein: two distinct RT subdomains required for centrosomal targeting and regulating signals in RT cell cycle."; RL Biochem. Biophys. Res. Commun. 308:975-983(2003). RN [13] RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE RP ANALYSIS]. RC TISSUE=Lymphoblast; RX PubMed=14654843; DOI=10.1038/nature02166; RA Andersen J.S., Wilkinson C.J., Mayor T., Mortensen P., Nigg E.A., Mann M.; RT "Proteomic characterization of the human centrosome by protein correlation RT profiling."; RL Nature 426:570-574(2003). RN [14] RP INTERACTION WITH C14ORF166. RX PubMed=15147888; DOI=10.1016/j.febslet.2004.04.024; RA Howng S.-L., Hsu H.-C., Cheng T.-S., Lee Y.-L., Chang L.-K., Lu P.-J., RA Hong Y.-R.; RT "A novel ninein-interaction protein, CGI-99, blocks ninein phosphorylation RT by GSK3beta and is highly expressed in brain tumors."; RL FEBS Lett. 566:162-168(2004). RN [15] RP AUTOANTIBODY. RX PubMed=9506584; RX DOI=10.1002/1529-0131(199803)41:3<551::aid-art22>3.0.co;2-x; RA Mack G.J., Rees J., Sandblom O., Balczon R., Fritzler M.J., Rattner J.B.; RT "Autoantibodies to a group of centrosomal proteins in human autoimmune sera RT reactive with the centrosome."; RL Arthritis Rheum. 41:551-558(1998). RN [16] RP AUTOANTIBODY. RX PubMed=14503922; DOI=10.1186/1471-2431-3-11; RA Fritzler M.J., Zhang M., Stinton L.M., Rattner J.B.; RT "Spectrum of centrosome autoantibodies in childhood varicella and post- RT varicella acute cerebellar ataxia."; RL BMC Pediatr. 3:11-11(2003). RN [17] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1550, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Embryonic kidney; RX PubMed=17525332; DOI=10.1126/science.1140321; RA Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., RA Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., RA Gygi S.P., Elledge S.J.; RT "ATM and ATR substrate analysis reveals extensive protein networks RT responsive to DNA damage."; RL Science 316:1160-1166(2007). RN [18] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1550, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Leukemic T-cell; RX PubMed=19690332; DOI=10.1126/scisignal.2000007; RA Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., RA Rodionov V., Han D.K.; RT "Quantitative phosphoproteomic analysis of T cell receptor signaling RT reveals system-wide modulation of protein-protein interactions."; RL Sci. Signal. 2:RA46-RA46(2009). RN [19] RP INTERACTION WITH AUNIP. RX PubMed=20596670; DOI=10.3892/ijo_00000691; RA Lieu A.S., Cheng T.S., Chou C.H., Wu C.H., Hsu C.Y., Huang C.Y., RA Chang L.K., Loh J.K., Chang C.S., Hsu C.M., Howng S.L., Hong Y.R.; RT "Functional characterization of AIBp, a novel Aurora-A binding protein in RT centrosome structure and spindle formation."; RL Int. J. Oncol. 37:429-436(2010). RN [20] RP FUNCTION, AND SUBCELLULAR LOCATION. RX PubMed=23386061; DOI=10.1038/emboj.2013.3; RA Kodani A., Salome Sirerol-Piquer M., Seol A., Garcia-Verdugo J.M., RA Reiter J.F.; RT "Kif3a interacts with Dynactin subunit p150 Glued to organize centriole RT subdistal appendages."; RL EMBO J. 32:597-607(2013). RN [21] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-152 AND SER-1550, AND RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma, and Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [22] RP INTERACTION WITH CCDC120. RX PubMed=28422092; DOI=10.1038/ncomms15057; RA Huang N., Xia Y., Zhang D., Wang S., Bao Y., He R., Teng J., Chen J.; RT "Hierarchical assembly of centriole subdistal appendages via centrosome RT binding proteins CCDC120 and CCDC68."; RL Nat. Commun. 8:15057-15057(2017). RN [23] RP VARIANT [LARGE SCALE ANALYSIS] GLU-1320. RX PubMed=18987736; DOI=10.1038/nature07485; RA Ley T.J., Mardis E.R., Ding L., Fulton B., McLellan M.D., Chen K., RA Dooling D., Dunford-Shore B.H., McGrath S., Hickenbotham M., Cook L., RA Abbott R., Larson D.E., Koboldt D.C., Pohl C., Smith S., Hawkins A., RA Abbott S., Locke D., Hillier L.W., Miner T., Fulton L., Magrini V., RA Wylie T., Glasscock J., Conyers J., Sander N., Shi X., Osborne J.R., RA Minx P., Gordon D., Chinwalla A., Zhao Y., Ries R.E., Payton J.E., RA Westervelt P., Tomasson M.H., Watson M., Baty J., Ivanovich J., Heath S., RA Shannon W.D., Nagarajan R., Walter M.J., Link D.C., Graubert T.A., RA DiPersio J.F., Wilson R.K.; RT "DNA sequencing of a cytogenetically normal acute myeloid leukaemia RT genome."; RL Nature 456:66-72(2008). RN [24] RP VARIANTS SCKL7 ARG-1222 AND SER-1709. RX PubMed=22933543; DOI=10.1210/jc.2012-2150; RA Dauber A., Lafranchi S.H., Maliga Z., Lui J.C., Moon J.E., McDeed C., RA Henke K., Zonana J., Kingman G.A., Pers T.H., Baron J., Rosenfeld R.G., RA Hirschhorn J.N., Harris M.P., Hwa V.; RT "Novel microcephalic primordial dwarfism disorder associated with variants RT in the centrosomal protein ninein."; RL J. Clin. Endocrinol. Metab. 97:E2140-E2151(2012). CC -!- FUNCTION: Centrosomal protein required in the positioning and anchorage CC of the microtubule minus-end in epithelial cells (PubMed:15190203, CC PubMed:23386061). May also act as a centrosome maturation factor CC (PubMed:11956314). May play a role in microtubule nucleation, by CC recruiting the gamma-tubulin ring complex to the centrosome CC (PubMed:15190203). Overexpression does not perturb nucleation or CC elongation of microtubules but suppresses release of microtubules CC (PubMed:15190203). Required for centriole organization and microtubule CC anchoring at the mother centriole (PubMed:23386061). CC {ECO:0000269|PubMed:11956314, ECO:0000269|PubMed:15190203, CC ECO:0000269|PubMed:23386061}. CC -!- SUBUNIT: Homooligomer. Interacts with GSK3B/GSK3-beta via its C- CC terminal domain (PubMed:11004522). Interacts with C14ORF166, such CC interaction may prevent its phosphorylation by GSK3B (PubMed:15147888). CC Interacts with AUNIP (via N-terminus) (PubMed:20596670). Identified in CC a complex with AUNIP and AURKA (PubMed:20596670). Interacts with CC CCDC120 (PubMed:28422092). Interacts (via C-terminus) with CEP250 (By CC similarity). Interacts with CEP170 (By similarity). Interacts with the CC gamma-tubulin ring complex component TUBGCP3 (By similarity). Interacts CC with gamma-tubulin (By similarity). Isoform 6 does not interact with CC CEP170 or CEP250 (By similarity). {ECO:0000250|UniProtKB:Q61043, CC ECO:0000269|PubMed:11004522, ECO:0000269|PubMed:15147888, CC ECO:0000269|PubMed:20596670, ECO:0000269|PubMed:28422092}. CC -!- INTERACTION: CC Q8N4C6; Q96HB5: CCDC120; NbExp=11; IntAct=EBI-1164022, EBI-744556; CC Q8N4C6; P49841: GSK3B; NbExp=3; IntAct=EBI-1164022, EBI-373586; CC Q8N4C6; Q9Y224: RTRAF; NbExp=4; IntAct=EBI-1164022, EBI-1104547; CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, microtubule organizing CC center, centrosome {ECO:0000269|PubMed:11004522, CC ECO:0000269|PubMed:11956314, ECO:0000269|PubMed:12403812, CC ECO:0000269|PubMed:12927815, ECO:0000269|PubMed:14654843, CC ECO:0000269|PubMed:15190203}. Cytoplasm, cytoskeleton, microtubule CC organizing center, centrosome, centriole {ECO:0000269|PubMed:23386061}. CC Note=Component of the core centrosome. Arranged in a tubular CC conformation with an open and a closed end within the centrosome. In CC the mother centrosome, it localizes at both ends of the centrosome CC tube, including the site of centrosome duplication, while in the CC daughter centrosome it is present only at the closed end. Requires PCM1 CC for centrosome localization. Localizes to the subdistal appendage CC region of the centriole in a DCTN1-dependent manner. CC {ECO:0000269|PubMed:11956314, ECO:0000269|PubMed:12403812, CC ECO:0000269|PubMed:23386061}. CC -!- SUBCELLULAR LOCATION: [Isoform 6]: Cytoplasm CC {ECO:0000250|UniProtKB:Q61043}. Note=Seems to have a dominant-negative CC effect on localization of other isoforms, promoting their dissociation CC from the centrosome. {ECO:0000250|UniProtKB:Q61043}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=9; CC Name=1; Synonyms=Lm; CC IsoId=Q8N4C6-1; Sequence=Displayed; CC Name=2; Synonyms=Isotype 3; CC IsoId=Q8N4C6-2; Sequence=VSP_010952; CC Name=3; Synonyms=Isotype 2; CC IsoId=Q8N4C6-10; Sequence=VSP_010952, VSP_010960; CC Name=4; Synonyms=Isotype 1; CC IsoId=Q8N4C6-4; Sequence=VSP_010952, VSP_010957, VSP_010958; CC Name=5; CC IsoId=Q8N4C6-5; Sequence=VSP_010950; CC Name=6; CC IsoId=Q8N4C6-6; Sequence=VSP_010953, VSP_010954, VSP_010955, CC VSP_010956; CC Name=7; Synonyms=B; CC IsoId=Q8N4C6-7; Sequence=VSP_010960; CC Name=8; CC IsoId=Q8N4C6-9; Sequence=VSP_040039; CC Name=9; CC IsoId=Q8N4C6-11; Sequence=VSP_010953; CC -!- TISSUE SPECIFICITY: Ubiquitous. Highly expressed in heart and skeletal CC muscle. Isoform 1 is more expressed than isoform 5. CC {ECO:0000269|PubMed:11004522, ECO:0000269|PubMed:11162463}. CC -!- DEVELOPMENTAL STAGE: In interphase cells, it is localized in the CC centrosome. Decreases in metaphase and anaphase and reappears in CC telophase. {ECO:0000269|PubMed:12927815}. CC -!- DOMAIN: There is conflicting information regarding the regions required CC for centrosomal localization. One study shows that the region 1601-1682 CC is necessary and sufficient for targeting to the centrosome CC (PubMed:12927815). Another study shows that a separate region, 1291- CC 1575, is important for centrosomal localization (PubMed:15190203). CC However, a third study shows that the coiled-coil region (373-1885) is CC not sufficient for centrosomal localization and instead localizes to CC cytoplasmic speckles (By similarity). The observed differences might be CC due to oligomerization of the longer coiled-coil domain-containing CC sequence, which would mask the shorter centrosomal targeting sequences CC (By similarity). {ECO:0000250|UniProtKB:Q61043, CC ECO:0000269|PubMed:12927815, ECO:0000269|PubMed:15190203}. CC -!- DOMAIN: The N-terminal domain is important for targeting to the mother CC centriole, although it is not sufficient by itself for centrosomal CC localization. {ECO:0000250|UniProtKB:Q61043}. CC -!- PTM: Phosphorylated by AURKA/Aurora kinase A and PKA kinases but not CC CK2 or AURKB/ Aurora kinase B. {ECO:0000269|PubMed:12927815}. CC -!- DISEASE: Seckel syndrome 7 (SCKL7) [MIM:614851]: A rare autosomal CC recessive disorder characterized by proportionate dwarfism of prenatal CC onset associated with low birth weight, growth retardation, severe CC microcephaly with a bird-headed like appearance, and intellectual CC disability. {ECO:0000269|PubMed:22933543}. Note=The disease is caused CC by variants affecting the gene represented in this entry. CC -!- MISCELLANEOUS: Antibodies against NIN are present in sera from patients CC with autoimmune diseases that developed autoantibodies against CC centrosomal proteins. CC -!- MISCELLANEOUS: [Isoform 2]: Dubious isoform produced through aberrant CC splice sites. {ECO:0000305}. CC -!- MISCELLANEOUS: [Isoform 3]: Dubious isoform produced through aberrant CC splice sites. {ECO:0000305}. CC -!- MISCELLANEOUS: [Isoform 4]: Dubious isoform produced through aberrant CC splice sites. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAH65521.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305}; CC Sequence=AAH65521.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; CC Sequence=AAK00628.1; Type=Miscellaneous discrepancy; Note=Several sequencing errors.; Evidence={ECO:0000305}; CC Sequence=AAK00629.1; Type=Miscellaneous discrepancy; Note=Several sequencing errors and frameshifts.; Evidence={ECO:0000305}; CC Sequence=AAK00630.1; Type=Miscellaneous discrepancy; Note=Several sequencing errors.; Evidence={ECO:0000305}; CC Sequence=BAB13391.2; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305}; CC Sequence=BAB15640.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; CC -!- WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and CC Haematology; CC URL="https://atlasgeneticsoncology.org/gene/176/NIN"; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AF212162; AAF23015.2; -; mRNA. DR EMBL; AF302773; AAG33512.2; -; mRNA. DR EMBL; AF223937; AAK00628.1; ALT_SEQ; mRNA. DR EMBL; AF223938; AAK00629.1; ALT_SEQ; mRNA. DR EMBL; AF223939; AAK00630.1; ALT_SEQ; mRNA. DR EMBL; AB046785; BAB13391.2; ALT_INIT; mRNA. DR EMBL; AL133485; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AL606834; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; BC034708; AAH34708.2; -; mRNA. DR EMBL; BC065521; AAH65521.1; ALT_SEQ; mRNA. DR EMBL; BC090932; AAH90932.1; -; mRNA. DR EMBL; AY027794; AAK27375.1; -; mRNA. DR EMBL; AY027795; AAK27376.1; -; mRNA. DR EMBL; AY027796; AAK27377.1; -; mRNA. DR EMBL; AF186776; AAG17027.1; -; mRNA. DR EMBL; AK027054; BAB15640.1; ALT_INIT; mRNA. DR CCDS; CCDS32078.2; -. [Q8N4C6-11] DR CCDS; CCDS32079.1; -. [Q8N4C6-1] DR CCDS; CCDS91876.1; -. [Q8N4C6-7] DR RefSeq; NP_057434.4; NM_016350.4. [Q8N4C6-11] DR RefSeq; NP_065972.3; NM_020921.3. [Q8N4C6-7] DR RefSeq; NP_891989.2; NM_182944.2. DR RefSeq; NP_891991.1; NM_182946.1. [Q8N4C6-1] DR RefSeq; XP_011535125.1; XM_011536823.2. DR AlphaFoldDB; Q8N4C6; -. DR SMR; Q8N4C6; -. DR BioGRID; 119372; 389. DR IntAct; Q8N4C6; 130. DR MINT; Q8N4C6; -. DR STRING; 9606.ENSP00000371472; -. DR BindingDB; Q8N4C6; -. DR GlyGen; Q8N4C6; 6 sites, 1 O-linked glycan (6 sites). DR iPTMnet; Q8N4C6; -. DR PhosphoSitePlus; Q8N4C6; -. DR BioMuta; NIN; -. DR DMDM; 311033487; -. DR EPD; Q8N4C6; -. DR jPOST; Q8N4C6; -. DR MassIVE; Q8N4C6; -. DR MaxQB; Q8N4C6; -. DR PaxDb; 9606-ENSP00000371472; -. DR PeptideAtlas; Q8N4C6; -. DR ProteomicsDB; 71907; -. [Q8N4C6-1] DR ProteomicsDB; 71908; -. [Q8N4C6-10] DR ProteomicsDB; 71909; -. [Q8N4C6-11] DR ProteomicsDB; 71910; -. [Q8N4C6-2] DR ProteomicsDB; 71911; -. [Q8N4C6-4] DR ProteomicsDB; 71912; -. [Q8N4C6-5] DR ProteomicsDB; 71913; -. [Q8N4C6-6] DR ProteomicsDB; 71914; -. [Q8N4C6-7] DR ProteomicsDB; 71915; -. [Q8N4C6-9] DR Pumba; Q8N4C6; -. DR Antibodypedia; 23688; 177 antibodies from 24 providers. DR DNASU; 51199; -. DR Ensembl; ENST00000324330.13; ENSP00000324210.10; ENSG00000100503.27. [Q8N4C6-11] DR Ensembl; ENST00000382041.7; ENSP00000371472.3; ENSG00000100503.27. [Q8N4C6-1] DR Ensembl; ENST00000382043.8; ENSP00000371474.4; ENSG00000100503.27. [Q8N4C6-11] DR Ensembl; ENST00000530997.7; ENSP00000436092.2; ENSG00000100503.27. [Q8N4C6-7] DR GeneID; 51199; -. DR KEGG; hsa:51199; -. DR MANE-Select; ENST00000530997.7; ENSP00000436092.2; NM_020921.4; NP_065972.4. [Q8N4C6-7] DR UCSC; uc001wyi.3; human. [Q8N4C6-1] DR AGR; HGNC:14906; -. DR CTD; 51199; -. DR DisGeNET; 51199; -. DR GeneCards; NIN; -. DR HGNC; HGNC:14906; NIN. DR HPA; ENSG00000100503; Tissue enhanced (bone). DR MalaCards; NIN; -. DR MIM; 608684; gene. DR MIM; 614851; phenotype. DR neXtProt; NX_Q8N4C6; -. DR OpenTargets; ENSG00000100503; -. DR Orphanet; 319675; Microcephalic primordial dwarfism, Dauber type. DR PharmGKB; PA31630; -. DR VEuPathDB; HostDB:ENSG00000100503; -. DR eggNOG; ENOG502QZCC; Eukaryota. DR GeneTree; ENSGT00660000095541; -. DR HOGENOM; CLU_001462_1_1_1; -. DR InParanoid; Q8N4C6; -. DR OMA; QDHYEER; -. DR OrthoDB; 2880167at2759; -. DR PhylomeDB; Q8N4C6; -. DR TreeFam; TF325139; -. DR PathwayCommons; Q8N4C6; -. DR SignaLink; Q8N4C6; -. DR SIGNOR; Q8N4C6; -. DR BioGRID-ORCS; 51199; 15 hits in 1161 CRISPR screens. DR ChiTaRS; NIN; human. DR GeneWiki; NIN_(gene); -. DR GenomeRNAi; 51199; -. DR Pharos; Q8N4C6; Tbio. DR PRO; PR:Q8N4C6; -. DR Proteomes; UP000005640; Chromosome 14. DR RNAct; Q8N4C6; Protein. DR Bgee; ENSG00000100503; Expressed in oviduct epithelium and 188 other cell types or tissues. DR ExpressionAtlas; Q8N4C6; baseline and differential. DR GO; GO:0045177; C:apical part of cell; IEA:Ensembl. DR GO; GO:0044295; C:axonal growth cone; IEA:Ensembl. DR GO; GO:0120103; C:centriolar subdistal appendage; IDA:GO_Central. DR GO; GO:0005814; C:centriole; IDA:UniProtKB. DR GO; GO:0005813; C:centrosome; IDA:HPA. DR GO; GO:0097539; C:ciliary transition fiber; IBA:GO_Central. DR GO; GO:0005881; C:cytoplasmic microtubule; IEA:Ensembl. DR GO; GO:0030425; C:dendrite; IEA:Ensembl. DR GO; GO:0072686; C:mitotic spindle; IDA:UniProtKB. DR GO; GO:0097431; C:mitotic spindle pole; IBA:GO_Central. DR GO; GO:0005730; C:nucleolus; IDA:HPA. DR GO; GO:0005654; C:nucleoplasm; IDA:HPA. DR GO; GO:0000242; C:pericentriolar material; IDA:MGI. DR GO; GO:0005886; C:plasma membrane; IEA:Ensembl. DR GO; GO:0000922; C:spindle pole; IMP:MGI. DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro. DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW. DR GO; GO:0019900; F:kinase binding; IEA:Ensembl. DR GO; GO:0051011; F:microtubule minus-end binding; IEA:Ensembl. DR GO; GO:0010457; P:centriole-centriole cohesion; IMP:GO_Central. DR GO; GO:0051642; P:centrosome localization; IBA:GO_Central. DR GO; GO:0090222; P:centrosome-templated microtubule nucleation; IBA:GO_Central. DR GO; GO:0048668; P:collateral sprouting; IEA:Ensembl. DR GO; GO:0021540; P:corpus callosum morphogenesis; IEA:Ensembl. DR GO; GO:0021957; P:corticospinal tract morphogenesis; IEA:Ensembl. DR GO; GO:0034454; P:microtubule anchoring at centrosome; IMP:UniProtKB. DR GO; GO:0050772; P:positive regulation of axonogenesis; IEA:Ensembl. DR GO; GO:0008104; P:protein localization; IMP:GO_Central. DR Gene3D; 1.10.238.10; EF-hand; 2. DR InterPro; IPR011992; EF-hand-dom_pair. DR InterPro; IPR002048; EF_hand_dom. DR PANTHER; PTHR18905; NINEIN; 1. DR PANTHER; PTHR18905:SF11; NINEIN; 1. DR SUPFAM; SSF47473; EF-hand; 1. DR PROSITE; PS50222; EF_HAND_2; 5. DR Genevisible; Q8N4C6; HS. PE 1: Evidence at protein level; KW Alternative splicing; Coiled coil; Cytoplasm; Cytoskeleton; KW Disease variant; Dwarfism; GTP-binding; Intellectual disability; KW Microtubule; Nucleotide-binding; Phosphoprotein; Reference proteome; KW Repeat. FT CHAIN 1..2090 FT /note="Ninein" FT /id="PRO_0000096844" FT DOMAIN 8..43 FT /note="EF-hand 1" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448" FT DOMAIN 42..77 FT /note="EF-hand 2" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448" FT DOMAIN 182..217 FT /note="EF-hand 3" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448" FT DOMAIN 219..252 FT /note="EF-hand 4" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448" FT DOMAIN 317..352 FT /note="EF-hand 5" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448" FT REGION 574..595 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 802..1505 FT /note="Important for interaction with CEP170" FT /evidence="ECO:0000250|UniProtKB:Q61043" FT REGION 1152..1190 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COILED 357..570 FT /evidence="ECO:0000255" FT COILED 625..1027 FT /evidence="ECO:0000255" FT COILED 1068..1099 FT /evidence="ECO:0000255" FT COILED 1181..1341 FT /evidence="ECO:0000255" FT COILED 1441..1816 FT /evidence="ECO:0000255" FT COILED 1854..1885 FT /evidence="ECO:0000255" FT COILED 1922..2067 FT /evidence="ECO:0000255" FT BINDING 245..252 FT /ligand="GTP" FT /ligand_id="ChEBI:CHEBI:37565" FT /evidence="ECO:0000255" FT BINDING 300..304 FT /ligand="GTP" FT /ligand_id="ChEBI:CHEBI:37565" FT /evidence="ECO:0000255" FT BINDING 420..423 FT /ligand="GTP" FT /ligand_id="ChEBI:CHEBI:37565" FT /evidence="ECO:0000255" FT MOD_RES 152 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT MOD_RES 269 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q61043" FT MOD_RES 1550 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:17525332, FT ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:23186163" FT MOD_RES 1837 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q61043" FT VAR_SEQ 1..38 FT /note="Missing (in isoform 8)" FT /evidence="ECO:0000303|PubMed:15489334" FT /id="VSP_040039" FT VAR_SEQ 1..35 FT /note="MDEVEQDQHEARLKELFDSFDTTGTGSLGQEELTD -> MAEVTVPRVYVVF FT GIHCIMAKASSDVQVSGFHRKIQHVKNE (in isoform 5)" FT /evidence="ECO:0000303|PubMed:11004522" FT /id="VSP_010950" FT VAR_SEQ 492..508 FT /note="Missing (in isoform 2, isoform 3 and isoform 4)" FT /evidence="ECO:0000303|PubMed:15190203, FT ECO:0000303|PubMed:15489334" FT /id="VSP_010952" FT VAR_SEQ 800..1512 FT /note="Missing (in isoform 6 and isoform 9)" FT /evidence="ECO:0000303|PubMed:10997877, FT ECO:0000303|PubMed:15489334" FT /id="VSP_010953" FT VAR_SEQ 1555 FT /note="Missing (in isoform 6)" FT /evidence="ECO:0000303|PubMed:10997877" FT /id="VSP_010954" FT VAR_SEQ 1960..1988 FT /note="MQHLRSTATPSPSPHAWDLQLLQQQACPM -> NSVVGSSREGCSSLPEIVC FT EDAAPEVHCDA (in isoform 6)" FT /evidence="ECO:0000303|PubMed:10997877" FT /id="VSP_010955" FT VAR_SEQ 1989..2090 FT /note="Missing (in isoform 6)" FT /evidence="ECO:0000303|PubMed:10997877" FT /id="VSP_010956" FT VAR_SEQ 2027..2046 FT /note="GNQEQLVTVMEERMIEVEQK -> ALLPEQRAVHADSYRRIGHL (in FT isoform 4)" FT /evidence="ECO:0000303|PubMed:15190203, FT ECO:0000303|PubMed:15489334" FT /id="VSP_010957" FT VAR_SEQ 2047..2090 FT /note="Missing (in isoform 4)" FT /evidence="ECO:0000303|PubMed:15190203, FT ECO:0000303|PubMed:15489334" FT /id="VSP_010958" FT VAR_SEQ 2065..2090 FT /note="VSLPGHLCSPTSHSSFNSSFTSLYCH -> LCKNTKADAMVKDLYVENAQLL FT KALEVTEQRQKTAEKKNYLLEEKIASLSNIVRNLTPAPLTSTPPLRS (in isoform FT 3 and isoform 7)" FT /evidence="ECO:0000303|PubMed:14702039, ECO:0000303|Ref.8" FT /id="VSP_010960" FT VARIANT 1111 FT /note="P -> A (in dbSNP:rs2236316)" FT /id="VAR_019453" FT VARIANT 1125 FT /note="Q -> P (in dbSNP:rs12882191)" FT /evidence="ECO:0000269|PubMed:11004522, FT ECO:0000269|PubMed:11162463, ECO:0000269|PubMed:15190203" FT /id="VAR_051235" FT VARIANT 1222 FT /note="Q -> R (in SCKL7; does not disrupt protein FT expression or localization or affect mitotic functions in FT an obvious way; dbSNP:rs187464517)" FT /evidence="ECO:0000269|PubMed:22933543" FT /id="VAR_069083" FT VARIANT 1320 FT /note="G -> E (in dbSNP:rs2073347)" FT /evidence="ECO:0000269|PubMed:11004522, FT ECO:0000269|PubMed:11162463, ECO:0000269|PubMed:15190203, FT ECO:0000269|PubMed:18987736" FT /id="VAR_019454" FT VARIANT 1709 FT /note="N -> S (in SCKL7; does not disrupt protein FT expression or localization or affect mitotic functions in FT an obvious way; dbSNP:rs387907308)" FT /evidence="ECO:0000269|PubMed:22933543" FT /id="VAR_069084" FT VARIANT 1837 FT /note="S -> T (in dbSNP:rs12717411)" FT /id="VAR_019455" FT VARIANT 1934 FT /note="Q -> E (in dbSNP:rs2295847)" FT /id="VAR_051236" FT CONFLICT 137 FT /note="H -> Y (in Ref. 1; AAF23015 and 2; AAG33512)" FT /evidence="ECO:0000305" FT CONFLICT 177 FT /note="S -> F (in Ref. 1; AAF23015)" FT /evidence="ECO:0000305" FT CONFLICT 203 FT /note="N -> D (in Ref. 2; AAG33512)" FT /evidence="ECO:0000305" FT CONFLICT 223 FT /note="M -> I (in Ref. 2; AAG33512)" FT /evidence="ECO:0000305" FT CONFLICT 295 FT /note="F -> I (in Ref. 2; AAG33512)" FT /evidence="ECO:0000305" FT CONFLICT 369 FT /note="I -> V (in Ref. 2; AAG33512)" FT /evidence="ECO:0000305" FT CONFLICT 399 FT /note="L -> S (in Ref. 2; AAG33512)" FT /evidence="ECO:0000305" FT CONFLICT 568 FT /note="L -> F (in Ref. 2; AAG33512)" FT /evidence="ECO:0000305" FT CONFLICT 809 FT /note="R -> I (in Ref. 1; AAF23015)" FT /evidence="ECO:0000305" FT CONFLICT 812 FT /note="S -> T (in Ref. 2; AAG33512)" FT /evidence="ECO:0000305" FT CONFLICT 945 FT /note="K -> I (in Ref. 2; AAG33512)" FT /evidence="ECO:0000305" FT CONFLICT 977 FT /note="D -> A (in Ref. 2; AAG33512)" FT /evidence="ECO:0000305" FT CONFLICT 980 FT /note="R -> G (in Ref. 1; AAF23015)" FT /evidence="ECO:0000305" FT CONFLICT 1054 FT /note="Q -> H (in Ref. 2; AAG33512)" FT /evidence="ECO:0000305" FT CONFLICT 1067 FT /note="L -> F (in Ref. 2; AAG33512)" FT /evidence="ECO:0000305" FT CONFLICT 1070 FT /note="L -> Q (in Ref. 1; AAF23015)" FT /evidence="ECO:0000305" FT CONFLICT 1150 FT /note="D -> G (in Ref. 1; AAF23015)" FT /evidence="ECO:0000305" FT CONFLICT 1237 FT /note="M -> I (in Ref. 1; AAF23015)" FT /evidence="ECO:0000305" SQ SEQUENCE 2090 AA; 243249 MW; 51D27CD38A369209 CRC64; MDEVEQDQHE ARLKELFDSF DTTGTGSLGQ EELTDLCHML SLEEVAPVLQ QTLLQDNLLG RVHFDQFKEA LILILSRTLS NEEHFQEPDC SLEAQPKYVR GGKRYGRRSL PEFQESVEEF PEVTVIEPLD EEARPSHIPA GDCSEHWKTQ RSEEYEAEGQ LRFWNPDDLN ASQSGSSPPQ DWIEEKLQEV CEDLGITRDG HLNRKKLVSI CEQYGLQNVD GEMLEEVFHN LDPDGTMSVE DFFYGLFKNG KSLTPSASTP YRQLKRHLSM QSFDESGRRT TTSSAMTSTI GFRVFSCLDD GMGHASVERI LDTWQEEGIE NSQEILKALD FSLDGNINLT ELTLALENEL LVTKNSIHQA ALASFKAEIR HLLERVDQVV REKEKLRSDL DKAEKLKSLM ASEVDDHHAA IERRNEYNLR KLDEEYKERI AALKNELRKE REQILQQAGK QRLELEQEIE KAKTEENYIR DRLALSLKEN SRLENELLEN AEKLAEYENL TNKLQRNLEN VLAEKFGDLD PSSAEFFLQE ERLTQMRNEY ERQCRVLQDQ VDELQSELEE YRAQGRVLRL PLKNSPSEEV EANSGGIEPE HGLGSEECNP LNMSIEAELV IEQMKEQHHR DICCLRLELE DKVRHYEKQL DETVVSCKKA QENMKQRHEN ETHTLEKQIS DLKNEIAELQ GQAAVLKEAH HEATCRHEEE KKQLQVKLEE EKTHLQEKLR LQHEMELKAR LTQAQASFER EREGLQSSAW TEEKVRGLTQ ELEQFHQEQL TSLVEKHTLE KEELRKELLE KHQRELQEGR EKMETECNRR TSQIEAQFQS DCQKVTERCE SALQSLEGRY RQELKDLQEQ QREEKSQWEF EKDELTQECA EAQELLKETL KREKTTSLVL TQEREMLEKT YKEHLNSMVV ERQQLLQDLE DLRNVSETQQ SLLSDQILEL KSSHKRELRE REEVLCQAGA SEQLASQRLE RLEMEHDQER QEMMSKLLAM ENIHKATCET ADRERAEMST EISRLQSKIK EMQQATSPLS MLQSGCQVIG EEEVEGDGAL SLLQQGEQLL EENGDVLLSL QRAHEQAVKE NVKMATEISR LQQRLQKLEP GLVMSSCLDE PATEFFGNTA EQTEQFLQQN RTKQVEGVTR RHVLSDLEDD EVRDLGSTGT SSVQRQEVKI EESEASVEGF SELENSEETR TESWELKNQI SQLQEQLMML CADCDRASEK KQDLLFDVSV LKKKLKMLER IPEASPKYKL LYEDVSREND CLQEELRMME TRYDEALENN KELTAEVFRL QDELKKMEEV TETFLSLEKS YDEVKIENEG LNVLVLRLQG KIEKLQESVV QRCDCCLWEA SLENLEIEPD GNILQLNQTL EECVPRVRSV HHVIEECKQE NQYLEGNTQL LEKVKAHEIA WLHGTIQTHQ ERPRVQNQVI LEENTTLLGF QDKHFQHQAT IAELELEKTK LQELTRKLKE RVTILVKQKD VLSHGEKEEE LKAMMHDLQI TCSEMQQKVE LLRYESEKLQ QENSILRNEI TTLNEEDSIS NLKLGTLNGS QEEMWQKTET VKQENAAVQK MVENLKKQIS ELKIKNQQLD LENTELSQKN SQNQEKLQEL NQRLTEMLCQ KEKEPGNSAL EEREQEKFNL KEELERCKVQ SSTLVSSLEA ELSEVKIQTH IVQQENHLLK DELEKMKQLH RCPDLSDFQQ KISSVLSYNE KLLKEKEALS EELNSCVDKL AKSSLLEHRI ATMKQEQKSW EHQSASLKSQ LVASQEKVQN LEDTVQNVNL QMSRMKSDLR VTQQEKEALK QEVMSLHKQL QNAGGKSWAP EIATHPSGLH NQQKRLSWDK LDHLMNEEQQ LLWQENERLQ TMVQNTKAEL THSREKVRQL ESNLLPKHQK HLNPSGTMNP TEQEKLSLKR ECDQFQKEQS PANRKVSQMN SLEQELETIH LENEGLKKKQ VKLDEQLMEM QHLRSTATPS PSPHAWDLQL LQQQACPMVP REQFLQLQRQ LLQAERINQH LQEELENRTS ETNTPQGNQE QLVTVMEERM IEVEQKLKLV KRLLQEKVNQ LKEQVSLPGH LCSPTSHSSF NSSFTSLYCH //