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Protein

PiggyBac transposable element-derived protein 5

Gene

PGBD5

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
PiggyBac transposable element-derived protein 5
Gene namesi
Name:PGBD5
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 1

Organism-specific databases

HGNCiHGNC:19405. PGBD5.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei405 – 42117HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134905621.

Polymorphism and mutation databases

BioMutaiPGBD5.
DMDMi300669682.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 455455PiggyBac transposable element-derived protein 5PRO_0000288056Add
BLAST

Proteomic databases

EPDiQ8N414.
MaxQBiQ8N414.
PaxDbiQ8N414.
PeptideAtlasiQ8N414.
PRIDEiQ8N414.

PTM databases

iPTMnetiQ8N414.
PhosphoSiteiQ8N414.

Expressioni

Gene expression databases

BgeeiENSG00000177614.
CleanExiHS_PGBD5.
ExpressionAtlasiQ8N414. baseline and differential.

Organism-specific databases

HPAiHPA065010.

Interactioni

Protein-protein interaction databases

BioGridi122741. 1 interaction.
STRINGi9606.ENSP00000322530.

Structurei

3D structure databases

ProteinModelPortaliQ8N414.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IJ9Y. Eukaryota.
ENOG410XP35. LUCA.
GeneTreeiENSGT00510000047893.
HOGENOMiHOG000115519.
HOVERGENiHBG053995.
InParanoidiQ8N414.
OMAiGIYCCGL.
OrthoDBiEOG091G0684.
PhylomeDBiQ8N414.
TreeFamiTF332005.

Family and domain databases

InterProiIPR029526. PGBD.
[Graphical view]
PfamiPF13843. DDE_Tnp_1_7. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8N414-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPDYRTRALF VQSTLGDSAG PELQLLSIVP GRDLQPSDSF TGPTRKMPPS
60 70 80 90 100
ASAVDFFQLF VPDNVLKNMV VQTNMYAKKF QERFGSDGAW VEVTLTEMKA
110 120 130 140 150
FLGYMISTSI SHCESVLSIW SGGFYSNRSL ALVMSQARFE KILKYFHVVA
160 170 180 190 200
FRSSQTTHGL YKVQPFLDSL QNSFDSAFRP SQTQVLHEPL IDEDPVFIAT
210 220 230 240 250
CTERELRKRK KRKFSLWVRQ CSSTGFIIQI YVHLKEGGGP DGLDALKNKP
260 270 280 290 300
QLHSMVARSL CRNAAGKNYI IFTGPSITSL TLFEEFEKQG IYCCGLLRAR
310 320 330 340 350
KSDCTGLPLS MLTNPATPPA RGQYQIKMKG NMSLICWYNK GHFRFLTNAY
360 370 380 390 400
SPVQQGVIIK RKSGEIPCPL AVEAFAAHLS YICRYDDKYS KYFISHKPNK
410 420 430 440 450
TWQQVFWFAI SIAINNAYIL YKMSDAYHVK RYSRAQFGER LVRELLGLED

ASPTH
Length:455
Mass (Da):51,642
Last modified:July 13, 2010 - v3
Checksum:iDF3393BFADC6F5F0
GO

Sequence cautioni

The sequence CAI13996 differs from that shown. Reason: Erroneous gene model prediction. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti245 – 2451A → V in AAI50639 (PubMed:15489334).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL691479 Genomic DNA. Translation: CAI13996.2. Sequence problems.
BC013901 mRNA. Translation: AAH13901.1.
BC027466 mRNA. Translation: AAH27466.1.
BC036865 mRNA. Translation: AAH36865.1.
BC150638 mRNA. Translation: AAI50639.1.
RefSeqiNP_001245240.1. NM_001258311.1.
UniGeneiHs.520463.

Genome annotation databases

EnsembliENST00000525115; ENSP00000431404; ENSG00000177614.
GeneIDi79605.
KEGGihsa:79605.
UCSCiuc057qgx.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL691479 Genomic DNA. Translation: CAI13996.2. Sequence problems.
BC013901 mRNA. Translation: AAH13901.1.
BC027466 mRNA. Translation: AAH27466.1.
BC036865 mRNA. Translation: AAH36865.1.
BC150638 mRNA. Translation: AAI50639.1.
RefSeqiNP_001245240.1. NM_001258311.1.
UniGeneiHs.520463.

3D structure databases

ProteinModelPortaliQ8N414.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi122741. 1 interaction.
STRINGi9606.ENSP00000322530.

PTM databases

iPTMnetiQ8N414.
PhosphoSiteiQ8N414.

Polymorphism and mutation databases

BioMutaiPGBD5.
DMDMi300669682.

Proteomic databases

EPDiQ8N414.
MaxQBiQ8N414.
PaxDbiQ8N414.
PeptideAtlasiQ8N414.
PRIDEiQ8N414.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000525115; ENSP00000431404; ENSG00000177614.
GeneIDi79605.
KEGGihsa:79605.
UCSCiuc057qgx.1. human.

Organism-specific databases

CTDi79605.
GeneCardsiPGBD5.
HGNCiHGNC:19405. PGBD5.
HPAiHPA065010.
neXtProtiNX_Q8N414.
PharmGKBiPA134905621.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IJ9Y. Eukaryota.
ENOG410XP35. LUCA.
GeneTreeiENSGT00510000047893.
HOGENOMiHOG000115519.
HOVERGENiHBG053995.
InParanoidiQ8N414.
OMAiGIYCCGL.
OrthoDBiEOG091G0684.
PhylomeDBiQ8N414.
TreeFamiTF332005.

Miscellaneous databases

ChiTaRSiPGBD5. human.
GenomeRNAii79605.
PROiQ8N414.

Gene expression databases

BgeeiENSG00000177614.
CleanExiHS_PGBD5.
ExpressionAtlasiQ8N414. baseline and differential.

Family and domain databases

InterProiIPR029526. PGBD.
[Graphical view]
PfamiPF13843. DDE_Tnp_1_7. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPGBD5_HUMAN
AccessioniPrimary (citable) accession number: Q8N414
Secondary accession number(s): A0PJF3
, B9EK58, Q5SR37, Q6PJN2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: July 13, 2010
Last modified: September 7, 2016
This is version 80 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.