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Protein

LOB domain-containing protein 6

Gene

LBD6

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity).By similarity

GO - Biological processi

Keywordsi

Molecular functionDevelopmental protein

Names & Taxonomyi

Protein namesi
Recommended name:
LOB domain-containing protein 6
Alternative name(s):
Crown rootless-like protein 3
Protein ASYMMETRIC LEAVES 2
Gene namesi
Name:LBD6
Synonyms:AS2, CRLL3
Ordered Locus Names:Os01g0889400, LOC_Os01g66590
ORF Names:B1099D03.43, OsJ_04355
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002991401 – 269LOB domain-containing protein 6Add BLAST269

Proteomic databases

PaxDbiQ8LQH4.
PRIDEiQ8LQH4.

Expressioni

Gene expression databases

ExpressionAtlasiQ8LQH4. baseline and differential.
GenevisibleiQ8LQH4. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os01g66590.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini37 – 138LOBPROSITE-ProRule annotationAdd BLAST102

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi144 – 153Poly-Ala10
Compositional biasi223 – 268Gly-richAdd BLAST46

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG410IVXF. Eukaryota.
ENOG4111S1U. LUCA.
InParanoidiQ8LQH4.
OMAiNFINIGH.
OrthoDBiEOG09360OQ2.

Family and domain databases

InterProiView protein in InterPro
IPR004883. LOB.
PfamiView protein in Pfam
PF03195. LOB. 1 hit.
PROSITEiView protein in PROSITE
PS50891. LOB. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8LQH4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSSASSVP APSGSVITIA SASASAAANT AACGTGSPCA ACKFLRRKCQ
60 70 80 90 100
PDCVFAPYFP PDNPQKFVHV HRVFGASNVT KLLNELHPYQ REDAVNSLAY
110 120 130 140 150
EADMRLRDPV YGCVAIISIL QRNLRQLQQD LARAKFELSK YQQAAAAAAA
160 170 180 190 200
ASASTGTNNG PHSMAEFIGN AVPNGAQSFI NVGHSAALAS VGGAAACFGQ
210 220 230 240 250
EQQFSAVHML SRSYEGEPIA RLGGNGGYEF GYSTSMAGGG HMSGLGALGG
260
APFLKSGIAG SDERQGAGQ
Length:269
Mass (Da):27,622
Last modified:October 1, 2002 - v1
Checksum:i4A6C5E1B04B6DF64
GO

Sequence cautioni

The sequence EEE55782 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti1 – 5MASSS → MGVHRQ in ABU44494 (Ref. 2) Curated5

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB200237 mRNA. Translation: BAD88526.1.
EF540766 mRNA. Translation: ABU44494.1.
AP003431 Genomic DNA. Translation: BAB92647.1.
AP008207 Genomic DNA. Translation: BAF06960.1.
AP014957 Genomic DNA. Translation: BAS75644.1.
CM000138 Genomic DNA. Translation: EEE55782.1. Sequence problems.
AK071407 mRNA. Translation: BAG92480.1.
AK119575 mRNA. Translation: BAG99700.1.
RefSeqiXP_015634701.1. XM_015779215.1.
UniGeneiOs.18459.

Genome annotation databases

EnsemblPlantsiOS01T0889400-01; OS01T0889400-01; OS01G0889400.
OS01T0889400-02; OS01T0889400-02; OS01G0889400.
GeneIDi4324906.
GrameneiOS01T0889400-01; OS01T0889400-01; OS01G0889400.
OS01T0889400-02; OS01T0889400-02; OS01G0889400.
KEGGiosa:4324906.

Similar proteinsi

Entry informationi

Entry nameiLBD6_ORYSJ
AccessioniPrimary (citable) accession number: Q8LQH4
Secondary accession number(s): A0A0P0VBD7
, A3A0D7, B2KKZ2, B7EJD3, B9EV98
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 21, 2007
Last sequence update: October 1, 2002
Last modified: December 20, 2017
This is version 77 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families