Q8LPS6 (PPR3_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Pentatricopeptide repeat-containing protein At1g02150

Gene names

Ordered Locus Names:	At1g02150
ORF Names:	T7I23.8, T6A9.13

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	524 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the PPR family. P subfamily. Contains 7 PPR (pentatricopeptide) repeats.

Ontologies

Keywords
Domain	Repeat
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular component	chloroplast Inferred from direct assay. Source: TAIR
Molecular function	binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 524	524	Pentatricopeptide repeat-containing protein At1g02150		PRO_0000342744
Regions
	Repeat	168 – 202	35	PPR 1
	Repeat	203 – 237	35	PPR 2
	Repeat	238 – 268	31	PPR 3
	Repeat	274 – 304	31	PPR 4
	Repeat	309 – 339	31	PPR 5
	Repeat	344 – 378	35	PPR 6
	Repeat	379 – 413	35	PPR 7
Experimental info
	Sequence conflict	119	1	L → I in AAO64747. Ref.3
	Sequence conflict	119	1	L → I in AAM19786. Ref.3

Sequences

	Sequence		Length	Mass (Da)
	Q8LPS6 [UniParc]. Last modified July 1, 2008. Version 2. Checksum: 3A9FDD26BD9FE1E6	FASTA	524	59,883
	10 20 30 40 50 60 MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER 70 80 90 100 110 120 RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW ELCRVVKELR KYKRANQALE 130 140 150 160 170 180 VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV 190 200 210 220 230 240 RAKSREKAEA LLNTMRDKGY ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY 250 260 270 280 290 300 SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK 310 320 330 340 350 360 VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD 370 380 390 400 410 420 IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE GLFDHMVEMG GKPSSSTWEI 430 440 450 460 470 480 LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL 490 500 510 520 RQSGDLEDKS YLALIDVDEN RTVNNSEIDA HETDALLTQL QDDL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[4]	"Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis." Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I. Plant Cell 16:2089-2103(2004) [PubMed: 15269332] [Abstract] Cited for: GENE FAMILY.
+	Additional computationally mapped references.

Web resources

Arabidopsis PPR Protein Database

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC064879 Genomic DNA. No translation available. U89959 Genomic DNA. Translation: AAC24372.1. CP002684 Genomic DNA. Translation: AEE27393.1. AY094410 mRNA. Translation: AAM19786.1. BT005812 mRNA. Translation: AAO64747.1.
IPI	IPI00524079.
RefSeq	NP_171717.2. NM_100095.3.
UniGene	At.28171. At.71188.
3D structure databases
ProteinModelPortal	Q8LPS6.
ModBase	Search...
Protein-protein interaction databases
STRING	Q8LPS6.
Proteomic databases
PRIDE	Q8LPS6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT1G02150.1; AT1G02150.1; AT1G02150.
GeneID	839577.
GenomeReviews	Gene locus AT1G02150 in contig CT485782_GR.
KEGG	ath:AT1G02150.
Organism-specific databases
GeneFarm	4827. 436.
TAIR	At1g02150.
Phylogenomic databases
eggNOG	KOG4197.
GeneTree	EPGT00050000001046.
HOGENOM	HBG596153.
OMA	YDWMNNR.
PhylomeDB	Q8LPS6.
ProtClustDB	CLSN2690378.
Gene expression databases
Genevestigator	Q8LPS6.
Family and domain databases
InterPro	IPR002885. Pentatricopeptide_repeat. IPR011990. TPR-like_helical. [Graphical view]
Gene3D	G3DSA:1.25.40.10. TPR-like_helical. 2 hits.
Pfam	PF01535. PPR. 6 hits. [Graphical view]
TIGRFAMs	TIGR00756. PPR. 3 hits.
PROSITE	PS51375. PPR. 7 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

PPR3_ARATH

Accession

Primary (citable) accession number: Q8LPS6
Secondary accession number(s): O23677

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 1, 2008
Last sequence update:	July 1, 2008
Last modified:	December 14, 2011
This is version 48 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program