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Protein

40S ribosomal protein S26-2

Gene

RPS26B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • mature ribosome assembly Source: CAFA
  • translation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S26-2
Gene namesi
Name:RPS26B
Ordered Locus Names:At2g40510
ORF Names:T2P4.14
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G40510.
TAIRilocus:2061883. AT2G40510.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
  • cytosol Source: TAIR
  • cytosolic small ribosomal subunit Source: TAIR
  • plasmodesma Source: TAIR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002505361 – 13340S ribosomal protein S26-2Add BLAST133

Proteomic databases

PaxDbiQ8LPJ7.
PRIDEiQ8LPJ7.

PTM databases

iPTMnetiQ8LPJ7.

Expressioni

Gene expression databases

ExpressionAtlasiQ8LPJ7. baseline and differential.
GenevisibleiQ8LPJ7. AT.

Interactioni

Protein-protein interaction databases

BioGridi3984. 4 interactors.
IntActiQ8LPJ7. 2 interactors.
STRINGi3702.AT2G40510.1.

Structurei

3D structure databases

ProteinModelPortaliQ8LPJ7.
SMRiQ8LPJ7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1768. Eukaryota.
COG4830. LUCA.
HOGENOMiHOG000108824.
InParanoidiQ8LPJ7.
KOiK02976.
OMAiDIKENCI.
OrthoDBiEOG09360YU3.
PhylomeDBiQ8LPJ7.

Family and domain databases

InterProiView protein in InterPro
IPR000892. Ribosomal_S26e.
PANTHERiPTHR12538. PTHR12538. 1 hit.
PfamiView protein in Pfam
PF01283. Ribosomal_S26e. 1 hit.
PROSITEiView protein in PROSITE
PS00733. RIBOSOMAL_S26E. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8LPJ7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI
60 70 80 90 100
RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
110 120 130
FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
Length:133
Mass (Da):14,841
Last modified:October 3, 2006 - v2
Checksum:i17062A9855B52DB5
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti64L → F in AAM20524 (PubMed:14593172).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002336 Genomic DNA. Translation: AAB87594.1.
CP002685 Genomic DNA. Translation: AEC09839.1.
AY099673 mRNA. Translation: AAM20524.1.
BT020291 mRNA. Translation: AAV84512.1.
BT026422 mRNA. Translation: ABH04529.1.
AY086823 mRNA. Translation: AAM63871.1.
PIRiD84830.
RefSeqiNP_181583.1. NM_129613.5.
UniGeneiAt.23445.

Genome annotation databases

EnsemblPlantsiAT2G40510.1; AT2G40510.1; AT2G40510.
GeneIDi818646.
GrameneiAT2G40510.1; AT2G40510.1; AT2G40510.
KEGGiath:AT2G40510.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS262_ARATH
AccessioniPrimary (citable) accession number: Q8LPJ7
Secondary accession number(s): O22884
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2006
Last sequence update: October 3, 2006
Last modified: July 5, 2017
This is version 92 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families