Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Pentatricopeptide repeat-containing protein At2g02980, chloroplastic

Gene

PCMP-H26

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

Involved in RNA editing event in chloroplasts. Required for the editing of a single site in ndhD transcript, which is a plastid-encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Not essential for the activity of the NDH complex of the photosynthetic electron transport chain.1 Publication

GO - Molecular functioni

GO - Biological processi

  • chloroplast RNA processing Source: TAIR
  • mRNA processing Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

mRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g02980, chloroplasticCurated
Alternative name(s):
Protein ORGANELLE TRANSCRIPT PROCESSING 851 Publication
Gene namesi
Name:PCMP-H26
Synonyms:OTP851 Publication
Ordered Locus Names:At2g02980
ORF Names:T17M13.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G02980.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

Pathology & Biotechi

Disruption phenotypei

No visible phenotype under normal growth conditions.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 38ChloroplastSequence analysisAdd BLAST38
ChainiPRO_000035600539 – 603Pentatricopeptide repeat-containing protein At2g02980, chloroplasticSequence analysisAdd BLAST565

Proteomic databases

PaxDbiQ8LK93.
PRIDEiQ8LK93.

Expressioni

Gene expression databases

GenevisibleiQ8LK93. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G02980.1.

Structurei

3D structure databases

ProteinModelPortaliQ8LK93.
SMRiQ8LK93.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati93 – 127PPR 1Add BLAST35
Repeati128 – 162PPR 2Add BLAST35
Repeati163 – 193PPR 3Add BLAST31
Repeati194 – 228PPR 4Add BLAST35
Repeati229 – 263PPR 5Add BLAST35
Repeati264 – 294PPR 6Add BLAST31
Repeati295 – 329PPR 7Add BLAST35
Repeati330 – 365PPR 8Add BLAST36
Repeati366 – 400PPR 9Add BLAST35
Repeati432 – 466PPR 10Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni401 – 476Type E motifAdd BLAST76
Regioni477 – 507Type E(+) motifAdd BLAST31
Regioni508 – 603Type DYW motifAdd BLAST96

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated
Contains 10 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ8LK93.
OMAiRDVQRFH.
OrthoDBiEOG093604W6.
PhylomeDBiQ8LK93.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 3 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
TIGRFAMsiTIGR00756. PPR. 5 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8LK93-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAISSASLIS SFSHAETFTK HSKIDTVNTQ NPILLISKCN SLRELMQIQA
60 70 80 90 100
YAIKSHIEDV SFVAKLINFC TESPTESSMS YARHLFEAMS EPDIVIFNSM
110 120 130 140 150
ARGYSRFTNP LEVFSLFVEI LEDGILPDNY TFPSLLKACA VAKALEEGRQ
160 170 180 190 200
LHCLSMKLGL DDNVYVCPTL INMYTECEDV DSARCVFDRI VEPCVVCYNA
210 220 230 240 250
MITGYARRNR PNEALSLFRE MQGKYLKPNE ITLLSVLSSC ALLGSLDLGK
260 270 280 290 300
WIHKYAKKHS FCKYVKVNTA LIDMFAKCGS LDDAVSIFEK MRYKDTQAWS
310 320 330 340 350
AMIVAYANHG KAEKSMLMFE RMRSENVQPD EITFLGLLNA CSHTGRVEEG
360 370 380 390 400
RKYFSQMVSK FGIVPSIKHY GSMVDLLSRA GNLEDAYEFI DKLPISPTPM
410 420 430 440 450
LWRILLAACS SHNNLDLAEK VSERIFELDD SHGGDYVILS NLYARNKKWE
460 470 480 490 500
YVDSLRKVMK DRKAVKVPGC SSIEVNNVVH EFFSGDGVKS ATTKLHRALD
510 520 530 540 550
EMVKELKLSG YVPDTSMVVH ANMNDQEKEI TLRYHSEKLA ITFGLLNTPP
560 570 580 590 600
GTTIRVVKNL RVCRDCHNAA KLISLIFGRK VVLRDVQRFH HFEDGKCSCG

DFW
Length:603
Mass (Da):68,170
Last modified:December 16, 2008 - v2
Checksum:i6D3F09887CE1786A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004138 Genomic DNA. Translation: AAC32916.1.
CP002685 Genomic DNA. Translation: AEC05651.1.
AF517844 mRNA. Translation: AAM77644.1.
PIRiH84442.
RefSeqiNP_178398.1. NM_126350.3.
UniGeneiAt.41442.

Genome annotation databases

EnsemblPlantsiAT2G02980.1; AT2G02980.1; AT2G02980.
GeneIDi814827.
GrameneiAT2G02980.1; AT2G02980.1; AT2G02980.
KEGGiath:AT2G02980.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004138 Genomic DNA. Translation: AAC32916.1.
CP002685 Genomic DNA. Translation: AEC05651.1.
AF517844 mRNA. Translation: AAM77644.1.
PIRiH84442.
RefSeqiNP_178398.1. NM_126350.3.
UniGeneiAt.41442.

3D structure databases

ProteinModelPortaliQ8LK93.
SMRiQ8LK93.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G02980.1.

Proteomic databases

PaxDbiQ8LK93.
PRIDEiQ8LK93.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G02980.1; AT2G02980.1; AT2G02980.
GeneIDi814827.
GrameneiAT2G02980.1; AT2G02980.1; AT2G02980.
KEGGiath:AT2G02980.

Organism-specific databases

TAIRiAT2G02980.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ8LK93.
OMAiRDVQRFH.
OrthoDBiEOG093604W6.
PhylomeDBiQ8LK93.

Miscellaneous databases

PROiQ8LK93.

Gene expression databases

GenevisibleiQ8LK93. AT.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 3 hits.
PF13041. PPR_2. 2 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
TIGRFAMsiTIGR00756. PPR. 5 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP145_ARATH
AccessioniPrimary (citable) accession number: Q8LK93
Secondary accession number(s): O80613
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: December 16, 2008
Last modified: November 30, 2016
This is version 83 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.