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Protein

Pentatricopeptide repeat-containing protein At2g02980, chloroplastic

Gene

PCMP-H26

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Involved in RNA editing event in chloroplasts. Required for the editing of a single site in ndhD transcript, which is a plastid-encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Not essential for the activity of the NDH complex of the photosynthetic electron transport chain.1 Publication

GO - Molecular functioni

GO - Biological processi

  • chloroplast RNA processing Source: TAIR
  • mRNA processing Source: UniProtKB-KW
  • RNA modification Source: GO_Central

Keywordsi

Biological processmRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g02980, chloroplasticCurated
Alternative name(s):
Protein ORGANELLE TRANSCRIPT PROCESSING 851 Publication
Gene namesi
Name:PCMP-H26
Synonyms:OTP851 Publication
Ordered Locus Names:At2g02980
ORF Names:T17M13.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G02980
TAIRilocus:2056740 AT2G02980

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

Pathology & Biotechi

Disruption phenotypei

No visible phenotype under normal growth conditions.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 38ChloroplastSequence analysisAdd BLAST38
ChainiPRO_000035600539 – 603Pentatricopeptide repeat-containing protein At2g02980, chloroplasticSequence analysisAdd BLAST565

Proteomic databases

PaxDbiQ8LK93
PRIDEiQ8LK93

Expressioni

Gene expression databases

ExpressionAtlasiQ8LK93 baseline and differential
GenevisibleiQ8LK93 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G02980.1

Structurei

3D structure databases

ProteinModelPortaliQ8LK93
SMRiQ8LK93
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati93 – 127PPR 1Add BLAST35
Repeati128 – 162PPR 2Add BLAST35
Repeati163 – 193PPR 3Add BLAST31
Repeati194 – 228PPR 4Add BLAST35
Repeati229 – 263PPR 5Add BLAST35
Repeati264 – 294PPR 6Add BLAST31
Repeati295 – 329PPR 7Add BLAST35
Repeati330 – 365PPR 8Add BLAST36
Repeati366 – 400PPR 9Add BLAST35
Repeati432 – 466PPR 10Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni401 – 476Type E motifAdd BLAST76
Regioni477 – 507Type E(+) motifAdd BLAST31
Regioni508 – 603Type DYW motifAdd BLAST96

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237569
InParanoidiQ8LK93
OMAiFAGDGRH
OrthoDBiEOG093604W6
PhylomeDBiQ8LK93

Family and domain databases

Gene3Di1.25.40.10, 3 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 3 hits
PF13041 PPR_2, 2 hits
SUPFAMiSSF48452 SSF48452, 1 hit
TIGRFAMsiTIGR00756 PPR, 5 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 10 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8LK93-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAISSASLIS SFSHAETFTK HSKIDTVNTQ NPILLISKCN SLRELMQIQA
60 70 80 90 100
YAIKSHIEDV SFVAKLINFC TESPTESSMS YARHLFEAMS EPDIVIFNSM
110 120 130 140 150
ARGYSRFTNP LEVFSLFVEI LEDGILPDNY TFPSLLKACA VAKALEEGRQ
160 170 180 190 200
LHCLSMKLGL DDNVYVCPTL INMYTECEDV DSARCVFDRI VEPCVVCYNA
210 220 230 240 250
MITGYARRNR PNEALSLFRE MQGKYLKPNE ITLLSVLSSC ALLGSLDLGK
260 270 280 290 300
WIHKYAKKHS FCKYVKVNTA LIDMFAKCGS LDDAVSIFEK MRYKDTQAWS
310 320 330 340 350
AMIVAYANHG KAEKSMLMFE RMRSENVQPD EITFLGLLNA CSHTGRVEEG
360 370 380 390 400
RKYFSQMVSK FGIVPSIKHY GSMVDLLSRA GNLEDAYEFI DKLPISPTPM
410 420 430 440 450
LWRILLAACS SHNNLDLAEK VSERIFELDD SHGGDYVILS NLYARNKKWE
460 470 480 490 500
YVDSLRKVMK DRKAVKVPGC SSIEVNNVVH EFFSGDGVKS ATTKLHRALD
510 520 530 540 550
EMVKELKLSG YVPDTSMVVH ANMNDQEKEI TLRYHSEKLA ITFGLLNTPP
560 570 580 590 600
GTTIRVVKNL RVCRDCHNAA KLISLIFGRK VVLRDVQRFH HFEDGKCSCG

DFW
Length:603
Mass (Da):68,170
Last modified:December 16, 2008 - v2
Checksum:i6D3F09887CE1786A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004138 Genomic DNA Translation: AAC32916.1
CP002685 Genomic DNA Translation: AEC05651.1
AF517844 mRNA Translation: AAM77644.1
PIRiH84442
RefSeqiNP_178398.1, NM_126350.3
UniGeneiAt.41442

Genome annotation databases

EnsemblPlantsiAT2G02980.1; AT2G02980.1; AT2G02980
GeneIDi814827
GrameneiAT2G02980.1; AT2G02980.1; AT2G02980
KEGGiath:AT2G02980

Similar proteinsi

Entry informationi

Entry nameiPP145_ARATH
AccessioniPrimary (citable) accession number: Q8LK93
Secondary accession number(s): O80613
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: December 16, 2008
Last modified: April 25, 2018
This is version 91 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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