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Q8LDM8

- Q8LDM8_ARATH

UniProt

Q8LDM8 - Q8LDM8_ARATH

Protein
Submitted name:

CCT motif family protein

Gene

At1g07050

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 64 (01 Oct 2014)
      Sequence version 1 (01 Oct 2002)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    CCT motif family proteinImported
    Submitted name:
    Putative uncharacterized protein At1g07050Imported
    Gene namesi
    Ordered Locus Names:At1g07050Imported
    OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 1

    Organism-specific databases

    TAIRiAT1G07050.

    Expressioni

    Gene expression databases

    GenevestigatoriQ8LDM8.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT1G07050.1-P.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG283732.
    HOGENOMiHOG000090331.
    InParanoidiQ8LDM8.
    OMAiDFWEEDE.
    PhylomeDBiQ8LDM8.

    Family and domain databases

    InterProiIPR010402. CCT_domain.
    [Graphical view]
    PfamiPF06203. CCT. 1 hit.
    [Graphical view]
    PROSITEiPS51017. CCT. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8LDM8-1 [UniParc]FASTAAdd to Basket

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    MDTQRLPKKE EEEEEDHLLS STFESINGHS RDQHNHSIDD FESIFDITID    50
    NLSCSNELTW DFWEEDEDED VGEEEKRSST DQEGSSFGFW ENKPTDYEDK 100
    DLGLKLNLNH QEVIDAWSDH QKPLWTDTST LDNSVYRGEV PVIEEKRNMR 150
    REASVLRYKE KRQSRLFSKK IRYQVRKLNA DKRPRFKGRF VKRET 195
    Length:195
    Mass (Da):23,320
    Last modified:October 1, 2002 - v1
    Checksum:i6F81EB7DFEFC3025
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei195 – 1951Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY085907 mRNA. Translation: AAM63119.1.
    CP002684 Genomic DNA. Translation: AEE28072.1.
    AK176556 mRNA. Translation: BAD44319.1.
    AB493438 mRNA. Translation: BAH30276.1.
    RefSeqiNP_563778.1. NM_100579.2.
    UniGeneiAt.42316.

    Genome annotation databases

    EnsemblPlantsiAT1G07050.1; AT1G07050.1; AT1G07050.
    GeneIDi837216.
    KEGGiath:AT1G07050.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY085907 mRNA. Translation: AAM63119.1 .
    CP002684 Genomic DNA. Translation: AEE28072.1 .
    AK176556 mRNA. Translation: BAD44319.1 .
    AB493438 mRNA. Translation: BAH30276.1 .
    RefSeqi NP_563778.1. NM_100579.2.
    UniGenei At.42316.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT1G07050.1-P.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT1G07050.1 ; AT1G07050.1 ; AT1G07050 .
    GeneIDi 837216.
    KEGGi ath:AT1G07050.

    Organism-specific databases

    TAIRi AT1G07050.

    Phylogenomic databases

    eggNOGi NOG283732.
    HOGENOMi HOG000090331.
    InParanoidi Q8LDM8.
    OMAi DFWEEDE.
    PhylomeDBi Q8LDM8.

    Gene expression databases

    Genevestigatori Q8LDM8.

    Family and domain databases

    InterProi IPR010402. CCT_domain.
    [Graphical view ]
    Pfami PF06203. CCT. 1 hit.
    [Graphical view ]
    PROSITEi PS51017. CCT. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
      Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
      , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
      Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. ColumbiaImported.
    2. "Full-length messenger RNA sequences greatly improve genome annotation."
      Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N., Feldmann K.A., Flavell R.B., White O., Salzberg S.L.
      Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    3. Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.
      Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
      Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
      , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
      Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    5. "Features of Arabidopsis genes and genome discovered using full-length cDNAs."
      Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.
      Plant Mol. Biol. 60:71-87(2006)
      Cited for: NUCLEOTIDE SEQUENCE.
    6. "ORF Cloning and Analysis of Arabidopsis Transcription Factor Genes."
      Fujita M.
      Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    7. TAIR
      Swarbreck D., Lamesch P., Wilks C., Huala E.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    8. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. ColumbiaImported.

    Entry informationi

    Entry nameiQ8LDM8_ARATH
    AccessioniPrimary (citable) accession number: Q8LDM8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 1, 2002
    Last sequence update: October 1, 2002
    Last modified: October 1, 2014
    This is version 64 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3