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Protein
Submitted name:

CCT motif family protein

Gene

At1g07050

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
CCT motif family proteinImported
Submitted name:
Putative uncharacterized protein At1g07050Imported
Gene namesi
Ordered Locus Names:At1g07050Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 1

Organism-specific databases

TAIRiAT1G07050.

Expressioni

Gene expression databases

GenevestigatoriQ8LDM8.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G07050.1-P.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG283732.
HOGENOMiHOG000090331.
OMAiDFWEEDE.
PhylomeDBiQ8LDM8.

Family and domain databases

InterProiIPR010402. CCT_domain.
[Graphical view]
PfamiPF06203. CCT. 1 hit.
[Graphical view]
PROSITEiPS51017. CCT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8LDM8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDTQRLPKKE EEEEEDHLLS STFESINGHS RDQHNHSIDD FESIFDITID
60 70 80 90 100
NLSCSNELTW DFWEEDEDED VGEEEKRSST DQEGSSFGFW ENKPTDYEDK
110 120 130 140 150
DLGLKLNLNH QEVIDAWSDH QKPLWTDTST LDNSVYRGEV PVIEEKRNMR
160 170 180 190
REASVLRYKE KRQSRLFSKK IRYQVRKLNA DKRPRFKGRF VKRET
Length:195
Mass (Da):23,320
Last modified:October 1, 2002 - v1
Checksum:i6F81EB7DFEFC3025
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei195 – 1951Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY085907 mRNA. Translation: AAM63119.1.
CP002684 Genomic DNA. Translation: AEE28072.1.
AK176556 mRNA. Translation: BAD44319.1.
AB493438 mRNA. Translation: BAH30276.1.
RefSeqiNP_563778.1. NM_100579.2.
UniGeneiAt.42316.

Genome annotation databases

EnsemblPlantsiAT1G07050.1; AT1G07050.1; AT1G07050.
GeneIDi837216.
KEGGiath:AT1G07050.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY085907 mRNA. Translation: AAM63119.1.
CP002684 Genomic DNA. Translation: AEE28072.1.
AK176556 mRNA. Translation: BAD44319.1.
AB493438 mRNA. Translation: BAH30276.1.
RefSeqiNP_563778.1. NM_100579.2.
UniGeneiAt.42316.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G07050.1-P.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G07050.1; AT1G07050.1; AT1G07050.
GeneIDi837216.
KEGGiath:AT1G07050.

Organism-specific databases

TAIRiAT1G07050.

Phylogenomic databases

eggNOGiNOG283732.
HOGENOMiHOG000090331.
OMAiDFWEEDE.
PhylomeDBiQ8LDM8.

Gene expression databases

GenevestigatoriQ8LDM8.

Family and domain databases

InterProiIPR010402. CCT_domain.
[Graphical view]
PfamiPF06203. CCT. 1 hit.
[Graphical view]
PROSITEiPS51017. CCT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  2. "Full-length messenger RNA sequences greatly improve genome annotation."
    Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N., Feldmann K.A., Flavell R.B., White O., Salzberg S.L.
    Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  5. "Features of Arabidopsis genes and genome discovered using full-length cDNAs."
    Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.
    Plant Mol. Biol. 60:71-87(2006)
    Cited for: NUCLEOTIDE SEQUENCE.
  6. "ORF Cloning and Analysis of Arabidopsis Transcription Factor Genes."
    Fujita M.
    Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  7. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  8. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ8LDM8_ARATH
AccessioniPrimary (citable) accession number: Q8LDM8
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: January 7, 2015
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.