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Protein

40S ribosomal protein S7-3

Gene

RPS7C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S7-3
Gene namesi
Name:RPS7C
Ordered Locus Names:At5g16130
ORF Names:T21H19_509
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G16130
TAIRilocus:2181402 AT5G16130

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002501851 – 19040S ribosomal protein S7-3Add BLAST190

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei1N-acetylmethionineCombined sources1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ8LD03
PRIDEiQ8LD03

PTM databases

iPTMnetiQ8LD03

Expressioni

Gene expression databases

ExpressionAtlasiQ8LD03 baseline and differential
GenevisibleiQ8LD03 AT

Interactioni

Protein-protein interaction databases

BioGridi16746, 4 interactors
STRINGi3702.AT5G16130.1

Structurei

3D structure databases

ProteinModelPortaliQ8LD03
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili17 – 50Sequence analysisAdd BLAST34

Sequence similaritiesi

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG3320 Eukaryota
ENOG410ZYKB LUCA
HOGENOMiHOG000197237
InParanoidiQ8LD03
KOiK02993
OMAiIEVGVGW
OrthoDBiEOG09360NFJ
PhylomeDBiQ8LD03

Family and domain databases

InterProiView protein in InterPro
IPR000554 Ribosomal_S7e
PANTHERiPTHR11278 PTHR11278, 1 hit
PfamiView protein in Pfam
PF01251 Ribosomal_S7e, 1 hit
PROSITEiView protein in PROSITE
PS00948 RIBOSOMAL_S7E, 1 hit

Sequencei

Sequence statusi: Complete.

Q8LD03-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFSAQNKIKK DKNAEPTECE EQVAQALFDL ENTNQELKSE LKDLYINQAV
60 70 80 90 100
HMDISGNRKA VVIYVPFRLR KAFRKIHPRL VRELEKKFSG KDVIFVTTRR
110 120 130 140 150
IMRPPKKGAA VQRPRNRTLT SVHEAMLEDV AFPAEIVGKR TRYRLDGSKI
160 170 180 190
MKVFLDAKEK NNTEYKLETM VGVYRKLTGK DVVFEYPVEA
Length:190
Mass (Da):22,061
Last modified:September 19, 2006 - v2
Checksum:i6BFD95547C7A8BED
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti9K → N in AAM64364 (Ref. 5) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL391148 Genomic DNA Translation: CAC01854.1
CP002688 Genomic DNA Translation: AED92250.1
BT024914 mRNA Translation: ABD94070.1
AK227242 mRNA Translation: BAE99279.1
AY086292 mRNA Translation: AAM64364.1
PIRiT51483
RefSeqiNP_197117.1, NM_121618.4
UniGeneiAt.24171
At.38580

Genome annotation databases

EnsemblPlantsiAT5G16130.1; AT5G16130.1; AT5G16130
GeneIDi831470
GrameneiAT5G16130.1; AT5G16130.1; AT5G16130
KEGGiath:AT5G16130

Similar proteinsi

Entry informationi

Entry nameiRS73_ARATH
AccessioniPrimary (citable) accession number: Q8LD03
Secondary accession number(s): Q9LF15
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 19, 2006
Last sequence update: September 19, 2006
Last modified: April 25, 2018
This is version 100 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health