Q8LCW9 (RLA11_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
60S acidic ribosomal protein P1-1

Gene names

Name:	RPP1A
Ordered Locus Names:	At1g01100
ORF Names:	T25K16.9

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	112 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Plays an important role in the elongation step of protein synthesis By similarity.
Subunit structure	P1 and P2 exist as dimers at the large ribosomal subunit By similarity.
Sequence similarities	Belongs to the ribosomal protein L12P family.

Ontologies

Keywords
Coding sequence diversity	Alternative splicing
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	translational elongation Inferred from electronic annotation. Source: InterPro
Cellular component	cytosolic ribosome Inferred from direct assay. Source: TAIR nucleus Inferred from direct assay. Source: TAIR plasma membrane Inferred from direct assay. Source: TAIR
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Alternative products

This entry describes 1 isoform produced by alternative splicing. [Select]

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: Q8LCW9-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 112	112	60S acidic ribosomal protein P1-1		PRO_0000245781
Experimental info
	Sequence conflict	70	1	G → S in AAM64427. Ref.4

Sequences

	Sequence		Length	Mass (Da)
	Isoform 1 [UniParc]. Last modified July 11, 2006. Version 2. Checksum: 6D086DD332205E7A	FASTA	112	11,162
	10 20 30 40 50 60 MSTVGELACS YAVMILEDEG IAITADKIAT LVKAAGVSIE SYWPMLFAKM AEKRNVTDLI 70 80 90 100 110 MNVGAGGGGG APVAAAAPAA GGGAAAAPAA EEKKKDEPAE ESDGDLGFGL FD

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[4]	"Full-length cDNA from Arabidopsis thaliana." Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[5]	"The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome." Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J. Plant Physiol. 127:398-415(2001) [PubMed: 11598216] [Abstract] Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC007323 Genomic DNA. Translation: AAF26471.1. CP002684 Genomic DNA. Translation: AEE27234.1. CP002684 Genomic DNA. Translation: AEE27235.1. CP002684 Genomic DNA. Translation: AEE27237.1. AY050975 mRNA. Translation: AAK93652.1. AY091176 mRNA. Translation: AAM14115.1. AY086359 mRNA. Translation: AAM64427.1.
IPI	IPI00518460.
PIR	E86141.
RefSeq	NP_001077439.1. NM_001083970.1. NP_171618.1. NM_099992.3. NP_849569.1. NM_179238.3.
UniGene	At.11901.
3D structure databases
ProteinModelPortal	Q8LCW9.
SMR	Q8LCW9. Positions 7-64.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q8LCW9. 2 interactions.
STRING	Q8LCW9.
Proteomic databases
PRIDE	Q8LCW9.
ProMEX	Q8LCW9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT1G01100.1; AT1G01100.1; AT1G01100. AT1G01100.2; AT1G01100.2; AT1G01100. AT1G01100.4; AT1G01100.4; AT1G01100.
GeneID	839410.
GenomeReviews	Gene locus AT1G01100 in contig CT485782_GR.
KEGG	ath:AT1G01100.
NMPDR	fig|3702.1.peg.214.
Organism-specific databases
TAIR	At1g01100.
Phylogenomic databases
GeneTree	EPGT00050000011513.
HOGENOM	HBG631105.
InParanoid	Q8LCW9.
OMA	SIESYWP.
PhylomeDB	Q8LCW9.
ProtClustDB	CLSN2682833.
Gene expression databases
Genevestigator	Q8LCW9.
GermOnline	AT1G01100. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR001813. Ribosomal_60S. [Graphical view]
Pfam	PF00428. Ribosomal_60s. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RLA11_ARATH

Accession

Primary (citable) accession number: Q8LCW9
Secondary accession number(s): Q9MAM5

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 11, 2006
Last sequence update:	July 11, 2006
Last modified:	December 14, 2011
This is version 56 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program