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Protein

60S ribosomal protein L5-1

Gene

ATL5

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

Binds to 5S ribosomal RNA.

GO - Molecular functioni

  • 5S rRNA binding Source: TAIR
  • structural constituent of ribosome Source: GO_Central

GO - Biological processi

  • adaxial/abaxial pattern specification Source: TAIR
  • cell proliferation Source: TAIR
  • leaf morphogenesis Source: TAIR
  • nucleocytoplasmic transport Source: TAIR
  • response to cytokinin Source: TAIR
  • ribosomal large subunit assembly Source: GO_Central
  • root morphogenesis Source: TAIR
  • translation Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L5-1
Gene namesi
Name:ATL5
Synonyms:RPL5A
Ordered Locus Names:At3g25520
ORF Names:MWL2.17
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G25520.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
  • cytoplasm Source: TAIR
  • cytosol Source: TAIR
  • cytosolic large ribosomal subunit Source: TAIR
  • cytosolic ribosome Source: TAIR
  • membrane Source: TAIR
  • nucleolus Source: TAIR
  • nucleus Source: TAIR
  • plasma membrane Source: TAIR
  • vacuole Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 30130160S ribosomal protein L5-1PRO_0000239919Add
BLAST

Proteomic databases

PaxDbiQ8LBI1.
PRIDEiQ8LBI1.

PTM databases

iPTMnetiQ8LBI1.

Expressioni

Gene expression databases

ExpressionAtlasiQ8LBI1. baseline and differential.
GenevisibleiQ8LBI1. AT.

Interactioni

Protein-protein interaction databases

BioGridi7469. 10 interactions.
IntActiQ8LBI1. 7 interactions.
STRINGi3702.AT3G25520.1.

Structurei

3D structure databases

ProteinModelPortaliQ8LBI1.
SMRiQ8LBI1. Positions 15-212.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L18P family.Curated

Phylogenomic databases

eggNOGiKOG0875. Eukaryota.
COG0256. LUCA.
HOGENOMiHOG000105947.
InParanoidiQ8LBI1.
KOiK02932.
OMAiNWAAAYC.
PhylomeDBiQ8LBI1.

Family and domain databases

HAMAPiMF_01337_A. Ribosomal_L18_A.
InterProiIPR005485. Rbsml_L5_euk/L18_arc.
IPR025607. Rbsml_L5e/L18P_C.
[Graphical view]
PANTHERiPTHR23410. PTHR23410. 1 hit.
PfamiPF14204. Ribosomal_L18_c. 1 hit.
PF17144. Ribosomal_L5e. 1 hit.
[Graphical view]
PRINTSiPR00058. RIBOSOMALL5.

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: Q8LBI1-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MVFVKSTKSN AYFKRYQVKF RRRRDGKTDY RARIRLINQD KNKYNTPKYR
60 70 80 90 100
FVVRFTNKDI VAQIVSASIA GDIVKASAYA HELPQYGLTV GLTNYAAAYC
110 120 130 140 150
TGLLLARRVL KMLEMDDEYE GNVEATGEDF SVEPTDSRRP FRALLDVGLI
160 170 180 190 200
RTTTGNRVFG ALKGALDGGL DIPHSDKRFA GFHKENKQLD AEIHRNYIYG
210 220 230 240 250
GHVSNYMKLL GEDEPEKLQT HFSAYIKKGV EAESIEELYK KVHAAIRADP
260 270 280 290 300
NPKKTVKPAP KQHKRYNLKK LTYEERKNKL IERVKALNGA GGDDDDEDDE

E
Length:301
Mass (Da):34,358
Last modified:June 13, 2006 - v2
Checksum:i9485CE63AB6ECD58
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti253 – 2531K → R in AAM64753 (Ref. 5) Curated
Sequence conflicti301 – 3011E → Z in AAM64753 (Ref. 5) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY186611 mRNA. Translation: AAO73340.1.
AB025639 Genomic DNA. No translation available.
CP002686 Genomic DNA. Translation: AEE77019.1.
AY054161 mRNA. Translation: AAL06822.1.
AY065103 mRNA. Translation: AAL38279.1.
AY081701 mRNA. Translation: AAM10263.1.
AY136319 mRNA. Translation: AAM96985.1.
BT000411 mRNA. Translation: AAN15730.1.
BT002427 mRNA. Translation: AAO00787.1.
BT008705 mRNA. Translation: AAP42718.1.
AY087197 mRNA. Translation: AAM64753.1.
RefSeqiNP_566767.1. NM_113448.4. [Q8LBI1-1]
UniGeneiAt.23809.
At.25396.

Genome annotation databases

EnsemblPlantsiAT3G25520.1; AT3G25520.1; AT3G25520. [Q8LBI1-1]
GeneIDi822138.
KEGGiath:AT3G25520.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY186611 mRNA. Translation: AAO73340.1.
AB025639 Genomic DNA. No translation available.
CP002686 Genomic DNA. Translation: AEE77019.1.
AY054161 mRNA. Translation: AAL06822.1.
AY065103 mRNA. Translation: AAL38279.1.
AY081701 mRNA. Translation: AAM10263.1.
AY136319 mRNA. Translation: AAM96985.1.
BT000411 mRNA. Translation: AAN15730.1.
BT002427 mRNA. Translation: AAO00787.1.
BT008705 mRNA. Translation: AAP42718.1.
AY087197 mRNA. Translation: AAM64753.1.
RefSeqiNP_566767.1. NM_113448.4. [Q8LBI1-1]
UniGeneiAt.23809.
At.25396.

3D structure databases

ProteinModelPortaliQ8LBI1.
SMRiQ8LBI1. Positions 15-212.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi7469. 10 interactions.
IntActiQ8LBI1. 7 interactions.
STRINGi3702.AT3G25520.1.

PTM databases

iPTMnetiQ8LBI1.

Proteomic databases

PaxDbiQ8LBI1.
PRIDEiQ8LBI1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G25520.1; AT3G25520.1; AT3G25520. [Q8LBI1-1]
GeneIDi822138.
KEGGiath:AT3G25520.

Organism-specific databases

TAIRiAT3G25520.

Phylogenomic databases

eggNOGiKOG0875. Eukaryota.
COG0256. LUCA.
HOGENOMiHOG000105947.
InParanoidiQ8LBI1.
KOiK02932.
OMAiNWAAAYC.
PhylomeDBiQ8LBI1.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiQ8LBI1.

Gene expression databases

ExpressionAtlasiQ8LBI1. baseline and differential.
GenevisibleiQ8LBI1. AT.

Family and domain databases

HAMAPiMF_01337_A. Ribosomal_L18_A.
InterProiIPR005485. Rbsml_L5_euk/L18_arc.
IPR025607. Rbsml_L5e/L18P_C.
[Graphical view]
PANTHERiPTHR23410. PTHR23410. 1 hit.
PfamiPF14204. Ribosomal_L18_c. 1 hit.
PF17144. Ribosomal_L5e. 1 hit.
[Graphical view]
PRINTSiPR00058. RIBOSOMALL5.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Identification and characterization of transcription factor IIIA and ribosomal protein L5 from Arabidopsis thaliana."
    Mathieu O., Yukawa Y., Prieto J.-L., Vaillant I., Sugiura M., Tourmente S.
    Nucleic Acids Res. 31:2424-2433(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION.
  2. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
    DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  6. "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome."
    Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J.
    Plant Physiol. 127:398-415(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.

Entry informationi

Entry nameiRL51_ARATH
AccessioniPrimary (citable) accession number: Q8LBI1
Secondary accession number(s): Q940R7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 13, 2006
Last sequence update: June 13, 2006
Last modified: June 8, 2016
This is version 94 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.