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Protein

Rhomboid-like protein 15

Gene

RBL15

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. May function in senescence.1 Publication

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei145 – 1451NucleophileBy similarity
Active sitei197 – 1971Charge relay systemBy similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease

Names & Taxonomyi

Protein namesi
Recommended name:
Rhomboid-like protein 151 Publication (EC:3.4.21.-Curated)
Short name:
AtRBL151 Publication
Gene namesi
Name:RBL151 Publication
Synonyms:RBL111 Publication
Ordered Locus Names:At3g58460Imported
ORF Names:F14P22.50Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G58460.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei22 – 4221HelicalSequence analysisAdd
BLAST
Transmembranei70 – 9021HelicalSequence analysisAdd
BLAST
Transmembranei103 – 12321HelicalSequence analysisAdd
BLAST
Transmembranei141 – 16121HelicalSequence analysisAdd
BLAST
Transmembranei176 – 19621HelicalSequence analysisAdd
BLAST
Transmembranei198 – 21821HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 403403Rhomboid-like protein 15PRO_0000220607Add
BLAST

Proteomic databases

PaxDbiQ8LB17.
PRIDEiQ8LB17.

PTM databases

iPTMnetiQ8LB17.

Expressioni

Gene expression databases

ExpressionAtlasiQ8LB17. baseline and differential.
GenevisibleiQ8LB17. AT.

Interactioni

Protein-protein interaction databases

BioGridi10330. 8 interactions.
IntActiQ8LB17. 8 interactions.
STRINGi3702.AT3G58460.2.

Structurei

Secondary structure

1
403
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi354 – 3563Combined sources
Helixi364 – 3718Combined sources
Turni372 – 3743Combined sources
Helixi377 – 38711Combined sources
Helixi391 – 3999Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VG5NMR-A342-401[»]
ProteinModelPortaliQ8LB17.
SMRiQ8LB17. Positions 343-403.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8LB17.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini361 – 40141UBAPROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi29 – 324Poly-Val

Sequence similaritiesi

Belongs to the peptidase S54 family.Curated
Contains 1 UBA domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG2632. Eukaryota.
ENOG41100KJ. LUCA.
HOGENOMiHOG000070588.
InParanoidiQ8LB17.
PhylomeDBiQ8LB17.

Family and domain databases

Gene3Di1.20.1540.10. 1 hit.
InterProiIPR022764. Peptidase_S54_rhomboid_dom.
IPR015940. UBA.
IPR009060. UBA-like.
[Graphical view]
PfamiPF01694. Rhomboid. 1 hit.
PF00627. UBA. 1 hit.
[Graphical view]
SMARTiSM00165. UBA. 1 hit.
[Graphical view]
SUPFAMiSSF46934. SSF46934. 1 hit.
PROSITEiPS50030. UBA. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q8LB17-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MRPNIVTEAG VQTRVGQWWN AIPFLTSSVV VVCGVIYLIC LLTGYDTFYE
60 70 80 90 100
VCFLPSAIIS RFQVYRFYTA IIFHGSLLHV LFNMMALVPM GSELERIMGS
110 120 130 140 150
VRLLYLTVLL ATTNAVLHLL IASLAGYNPF YQYDHLMNEC AIGFSGILFS
160 170 180 190 200
MIVIETSLSG VTSRSVFGLF NVPAKLYPWI LLIVFQLLMT NVSLLGHLCG
210 220 230 240 250
ILSGFSYSYG LFNFLMPGSS FFTTIESASW MSSFIRRPKF IMCTGGNPSS
260 270 280 290 300
YIPTYSAQNT TSSGFSTGNA WRSLSSWLPQ REASNQSSED SRFPGRGRTL
310 320 330 340 350
STARDPTAPA GETDPNLHAR LLEDSSSPDR LSDATVNTVA DSRQAPIANA
360 370 380 390 400
AVLPQSQGRV AASEEQIQKL VAMGFDRTQV EVALAAADDD LTVAVEILMS

QQA
Length:403
Mass (Da):44,145
Last modified:August 30, 2005 - v2
Checksum:iFF6CD14E5582CB16
GO
Isoform 2 (identifier: Q8LB17-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     358-362: GRVAA → VTFLL
     363-403: Missing.

Note: No experimental confirmation available.Curated
Show »
Length:362
Mass (Da):39,847
Checksum:iD4069D52D42ECAE2
GO

Sequence cautioni

The sequence CAB68184 differs from that shown. Reason: Erroneous gene model prediction. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti237 – 2371R → Q in AAM65024 (PubMed:14593172).Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei358 – 3625GRVAA → VTFLL in isoform 2. VSP_057725
Alternative sequencei363 – 40341Missing in isoform 2. VSP_057726Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL137082 Genomic DNA. Translation: CAB68184.1. Sequence problems.
CP002686 Genomic DNA. Translation: AEE79784.1.
AY136386 mRNA. Translation: AAM97052.1.
BT000186 mRNA. Translation: AAN15505.1.
AK318905 mRNA. Translation: BAH57020.1.
AY087480 mRNA. Translation: AAM65024.1.
PIRiT45666.
RefSeqiNP_567064.1. NM_115708.3. [Q8LB17-1]
UniGeneiAt.43287.

Genome annotation databases

EnsemblPlantsiAT3G58460.1; AT3G58460.1; AT3G58460. [Q8LB17-1]
GeneIDi825015.
KEGGiath:AT3G58460.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL137082 Genomic DNA. Translation: CAB68184.1. Sequence problems.
CP002686 Genomic DNA. Translation: AEE79784.1.
AY136386 mRNA. Translation: AAM97052.1.
BT000186 mRNA. Translation: AAN15505.1.
AK318905 mRNA. Translation: BAH57020.1.
AY087480 mRNA. Translation: AAM65024.1.
PIRiT45666.
RefSeqiNP_567064.1. NM_115708.3. [Q8LB17-1]
UniGeneiAt.43287.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VG5NMR-A342-401[»]
ProteinModelPortaliQ8LB17.
SMRiQ8LB17. Positions 343-403.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi10330. 8 interactions.
IntActiQ8LB17. 8 interactions.
STRINGi3702.AT3G58460.2.

PTM databases

iPTMnetiQ8LB17.

Proteomic databases

PaxDbiQ8LB17.
PRIDEiQ8LB17.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G58460.1; AT3G58460.1; AT3G58460. [Q8LB17-1]
GeneIDi825015.
KEGGiath:AT3G58460.

Organism-specific databases

TAIRiAT3G58460.

Phylogenomic databases

eggNOGiKOG2632. Eukaryota.
ENOG41100KJ. LUCA.
HOGENOMiHOG000070588.
InParanoidiQ8LB17.
PhylomeDBiQ8LB17.

Miscellaneous databases

EvolutionaryTraceiQ8LB17.
PROiQ8LB17.

Gene expression databases

ExpressionAtlasiQ8LB17. baseline and differential.
GenevisibleiQ8LB17. AT.

Family and domain databases

Gene3Di1.20.1540.10. 1 hit.
InterProiIPR022764. Peptidase_S54_rhomboid_dom.
IPR015940. UBA.
IPR009060. UBA-like.
[Graphical view]
PfamiPF01694. Rhomboid. 1 hit.
PF00627. UBA. 1 hit.
[Graphical view]
SMARTiSM00165. UBA. 1 hit.
[Graphical view]
SUPFAMiSSF46934. SSF46934. 1 hit.
PROSITEiPS50030. UBA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRBL15_ARATH
AccessioniPrimary (citable) accession number: Q8LB17
Secondary accession number(s): C0Z2U1, Q8L7A1, Q9M2H0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: August 30, 2005
Last modified: June 8, 2016
This is version 93 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Peptidase families
    Classification of peptidase families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.