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Protein

Dof zinc finger protein DOF1.1

Gene

DOF1.1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri77 – 13155Dof-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Dof zinc finger protein DOF1.1
Short name:
AtDOF1.1
Alternative name(s):
OBF-binding protein 2
Gene namesi
Name:DOF1.1
Synonyms:OBP2
Ordered Locus Names:At1g07640
ORF Names:F24B9.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G07640.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 331331Dof zinc finger protein DOF1.1PRO_0000074263Add
BLAST

Proteomic databases

PaxDbiQ8L9V6.
PRIDEiQ8L9V6.

Expressioni

Tissue specificityi

Predominantly expressed in leaves and roots.1 Publication

Inductioni

By auxin and salicylic acid (SA).1 Publication

Gene expression databases

ExpressionAtlasiQ8L9V6. baseline and differential.
GenevisibleiQ8L9V6. AT.

Interactioni

Subunit structurei

Interacts with OBF4.1 Publication

Protein-protein interaction databases

STRINGi3702.AT1G07640.3.

Structurei

3D structure databases

ProteinModelPortaliQ8L9V6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi140 – 15819Ser-richAdd
BLAST
Compositional biasi222 – 23514Asn-richAdd
BLAST

Sequence similaritiesi

Contains 1 Dof-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri77 – 13155Dof-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG410IYDY. Eukaryota.
ENOG410YIDB. LUCA.
HOGENOMiHOG000239956.
InParanoidiQ8L9V6.
PhylomeDBiQ8L9V6.

Family and domain databases

InterProiIPR003851. Znf_Dof.
[Graphical view]
PfamiPF02701. zf-Dof. 1 hit.
[Graphical view]
ProDomiPD007478. Znf_Dof. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q8L9V6-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MPTNSNHQHH LQHQLNENGS IISGHGLVLS HQLPPLQANP NPNHHHVATS
60 70 80 90 100
AGLPSRMGGS MAERARQANI PPLAGPLKCP RCDSSNTKFC YYNNYNLTQP
110 120 130 140 150
RHFCKGCRRY WTQGGALRNV PVGGGCRRNN KKGKNGNLKS SSSSSKQSSS
160 170 180 190 200
VNAQSPSSGQ LRTNHQFPFS PTLYNLTQLG GIGLNLAATN GNNQAHQIGS
210 220 230 240 250
SLMMSDLGFL HGRNTSTPMT GNIHENNNNN NNENNLMASV GSLSPFALFD
260 270 280 290 300
PTTGLYAFQN DGNIGNNVGI SGSSTSMVDS RVYQTPPVKM EEQPNLANLS
310 320 330
RPVSGLTSPG NQTNQYFWPG SDFSGPSNDL L
Note: No experimental confirmation available.
Length:331
Mass (Da):35,589
Last modified:October 25, 2004 - v2
Checksum:iD13ED8009A1A8996
GO
Isoform 2 (identifier: Q8L9V6-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-56: Missing.

Show »
Length:275
Mass (Da):29,534
Checksum:iEEE6B812CC1C2ACE
GO

Sequence cautioni

The sequence AAD38986.1 differs from that shown. Reason: Frameshift at positions 286 and 301. Curated
The sequence AAF75094.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti102 – 1021H → Y in AAM65740 (Ref. 5) Curated
Sequence conflicti330 – 3301L → I in AAM65740 (Ref. 5) Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 5656Missing in isoform 2. 2 PublicationsVSP_011776Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF155816 mRNA. Translation: AAD38986.1. Frameshift.
AC007583 Genomic DNA. Translation: AAF75094.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE28152.1.
CP002684 Genomic DNA. Translation: AEE28153.1.
AY062715 mRNA. Translation: AAL32793.1.
AY093351 mRNA. Translation: AAM13350.1.
AY088198 mRNA. Translation: AAM65740.1.
PIRiH86210.
RefSeqiNP_001030988.1. NM_001035911.1.
NP_563792.3. NM_100637.3. [Q8L9V6-1]
NP_850938.1. NM_180607.1. [Q8L9V6-2]
UniGeneiAt.14846.

Genome annotation databases

EnsemblPlantsiAT1G07640.2; AT1G07640.2; AT1G07640. [Q8L9V6-1]
GeneIDi837277.
KEGGiath:AT1G07640.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF155816 mRNA. Translation: AAD38986.1. Frameshift.
AC007583 Genomic DNA. Translation: AAF75094.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE28152.1.
CP002684 Genomic DNA. Translation: AEE28153.1.
AY062715 mRNA. Translation: AAL32793.1.
AY093351 mRNA. Translation: AAM13350.1.
AY088198 mRNA. Translation: AAM65740.1.
PIRiH86210.
RefSeqiNP_001030988.1. NM_001035911.1.
NP_563792.3. NM_100637.3. [Q8L9V6-1]
NP_850938.1. NM_180607.1. [Q8L9V6-2]
UniGeneiAt.14846.

3D structure databases

ProteinModelPortaliQ8L9V6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G07640.3.

Proteomic databases

PaxDbiQ8L9V6.
PRIDEiQ8L9V6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G07640.2; AT1G07640.2; AT1G07640. [Q8L9V6-1]
GeneIDi837277.
KEGGiath:AT1G07640.

Organism-specific databases

TAIRiAT1G07640.

Phylogenomic databases

eggNOGiENOG410IYDY. Eukaryota.
ENOG410YIDB. LUCA.
HOGENOMiHOG000239956.
InParanoidiQ8L9V6.
PhylomeDBiQ8L9V6.

Miscellaneous databases

PROiQ8L9V6.

Gene expression databases

ExpressionAtlasiQ8L9V6. baseline and differential.
GenevisibleiQ8L9V6. AT.

Family and domain databases

InterProiIPR003851. Znf_Dof.
[Graphical view]
PfamiPF02701. zf-Dof. 1 hit.
[Graphical view]
ProDomiPD007478. Znf_Dof. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Characterization of salicylic acid-responsive, Arabidopsis Dof domain proteins: overexpression of OBP3 leads to growth defects."
    Kang H.-G., Singh K.B.
    Plant J. 21:329-339(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), TISSUE SPECIFICITY, INDUCTION, INTERACTION WITH OBF4.
    Strain: cv. Columbia.
  2. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Strain: cv. Columbia.
  5. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
  6. "The Dof family of plant transcription factors."
    Yanagisawa S.
    Trends Plant Sci. 7:555-560(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiDOF11_ARATH
AccessioniPrimary (citable) accession number: Q8L9V6
Secondary accession number(s): Q8W4A2, Q9LQN7, Q9XGU6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 25, 2004
Last sequence update: October 25, 2004
Last modified: February 17, 2016
This is version 84 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.