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Protein

Ethylene-responsive transcription factor 13

Gene

ERF13

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi91 – 149AP2/ERFPROSITE-ProRule annotationAdd BLAST59

GO - Molecular functioni

  • DNA binding Source: TAIR
  • sequence-specific DNA binding Source: TAIR
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • defense response Source: UniProtKB-KW
  • ethylene-activated signaling pathway Source: TAIR
  • response to chitin Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Ethylene signaling pathway, Plant defense, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor 13
Short name:
AtERF13
Alternative name(s):
Ethylene-responsive element-binding factor 13
Short name:
EREBP-13
Gene namesi
Name:ERF13
Synonyms:ERF-13, ERF099
Ordered Locus Names:At2g44840
ORF Names:T13E15.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G44840.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001125491 – 226Ethylene-responsive transcription factor 13Add BLAST226

Proteomic databases

PaxDbiQ8L9K1.

PTM databases

iPTMnetiQ8L9K1.

Expressioni

Tissue specificityi

Ubiquitously expressed after ethylene treatment.1 Publication

Inductioni

Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants.2 Publications

Gene expression databases

GenevisibleiQ8L9K1. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G44840.1.

Structurei

3D structure databases

ProteinModelPortaliQ8L9K1.
SMRiQ8L9K1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi96 – 112Nuclear localization signalSequence analysisAdd BLAST17

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410JD73. Eukaryota.
ENOG41116MW. LUCA.
HOGENOMiHOG000239314.
InParanoidiQ8L9K1.
OMAiKYEPVRI.
OrthoDBiEOG09360NE7.
PhylomeDBiQ8L9K1.

Family and domain databases

CDDicd00018. AP2. 1 hit.
Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8L9K1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSSDSVNNG VNSRMYFRNP SFSNVILNDN WSDLPLSVDD SQDMAIYNTL
60 70 80 90 100
RDAVSSGWTP SVPPVTSPAE ENKPPATKAS GSHAPRQKGM QYRGVRRRPW
110 120 130 140 150
GKFAAEIRDP KKNGARVWLG TYETPEDAAV AYDRAAFQLR GSKAKLNFPH
160 170 180 190 200
LIGSCKYEPV RIRPRRRSPE PSVSDQLTSE QKRESHVDDG ESSLVVPELD
210 220
FTVDQFYFDG SLLMDQSECS YSDNRI
Length:226
Mass (Da):25,353
Last modified:January 4, 2005 - v2
Checksum:i4B2EF81CDD856987
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti57G → A in AAM65925 (Ref. 4) Curated1
Sequence conflicti72N → D in AAM65925 (Ref. 4) Curated1
Sequence conflicti191E → K in AAM65925 (Ref. 4) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002388 Genomic DNA. Translation: AAC31840.1.
CP002685 Genomic DNA. Translation: AEC10473.1.
AF325089 mRNA. Translation: AAK17157.1.
AF370540 mRNA. Translation: AAK48967.1.
AY072471 mRNA. Translation: AAL66886.1.
AY088387 mRNA. Translation: AAM65925.1.
PIRiT00409.
RefSeqiNP_182011.1. NM_130048.3.
UniGeneiAt.29014.

Genome annotation databases

EnsemblPlantsiAT2G44840.1; AT2G44840.1; AT2G44840.
GeneIDi819093.
GrameneiAT2G44840.1; AT2G44840.1; AT2G44840.
KEGGiath:AT2G44840.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002388 Genomic DNA. Translation: AAC31840.1.
CP002685 Genomic DNA. Translation: AEC10473.1.
AF325089 mRNA. Translation: AAK17157.1.
AF370540 mRNA. Translation: AAK48967.1.
AY072471 mRNA. Translation: AAL66886.1.
AY088387 mRNA. Translation: AAM65925.1.
PIRiT00409.
RefSeqiNP_182011.1. NM_130048.3.
UniGeneiAt.29014.

3D structure databases

ProteinModelPortaliQ8L9K1.
SMRiQ8L9K1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G44840.1.

PTM databases

iPTMnetiQ8L9K1.

Proteomic databases

PaxDbiQ8L9K1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G44840.1; AT2G44840.1; AT2G44840.
GeneIDi819093.
GrameneiAT2G44840.1; AT2G44840.1; AT2G44840.
KEGGiath:AT2G44840.

Organism-specific databases

TAIRiAT2G44840.

Phylogenomic databases

eggNOGiENOG410JD73. Eukaryota.
ENOG41116MW. LUCA.
HOGENOMiHOG000239314.
InParanoidiQ8L9K1.
OMAiKYEPVRI.
OrthoDBiEOG09360NE7.
PhylomeDBiQ8L9K1.

Miscellaneous databases

PROiQ8L9K1.

Gene expression databases

GenevisibleiQ8L9K1. AT.

Family and domain databases

CDDicd00018. AP2. 1 hit.
Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiERF99_ARATH
AccessioniPrimary (citable) accession number: Q8L9K1
Secondary accession number(s): O22167
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 4, 2005
Last sequence update: January 4, 2005
Last modified: November 30, 2016
This is version 99 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.