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Protein
Submitted name:

At2g29210/F16P2.41

Gene

At2g29210

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  1. mRNA processing Source: InterPro
  2. RNA splicing Source: TAIR
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_281290. mRNA 3'-end processing.
REACT_291299. mRNA Splicing - Major Pathway.

Names & Taxonomyi

Protein namesi
Submitted name:
At2g29210/F16P2.41Imported
Submitted name:
Serine/arginine repetitive matrix protein 1-like proteinImported
Gene namesi
Ordered Locus Names:At2g29210Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G29210.

PTM / Processingi

Proteomic databases

PaxDbiQ8L7W3.
PRIDEiQ8L7W3.

Expressioni

Gene expression databases

ExpressionAtlasiQ8L7W3. baseline and differential.
GenevestigatoriQ8L7W3.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
At4g33690Q6NPE92EBI-4430408,EBI-4430370

Protein-protein interaction databases

IntActiQ8L7W3. 5 interactions.
STRINGi3702.AT2G29210.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ8L7W3.
SMRiQ8L7W3. Positions 29-133.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG242213.
HOGENOMiHOG000148632.
InParanoidiQ8L7W3.
KOiK13171.
OMAiIRPWIAN.

Family and domain databases

Gene3Di1.20.1390.10. 1 hit.
InterProiIPR002483. PWI_dom.
[Graphical view]
PfamiPF01480. PWI. 1 hit.
[Graphical view]
SMARTiSM00311. PWI. 1 hit.
[Graphical view]
SUPFAMiSSF101233. SSF101233. 1 hit.
PROSITEiPS51025. PWI. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8L7W3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP
60 70 80 90 100
WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
110 120 130 140 150
MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN
160 170 180 190 200
IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
210 220 230 240 250
PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR
260 270 280 290 300
KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
310 320 330 340 350
RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR
360 370 380 390 400
RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
410 420 430 440 450
SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR
460 470 480 490 500
LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
510 520 530 540 550
ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP
560 570 580 590 600
SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
610 620 630 640 650
RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE
660 670 680 690 700
QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
710 720 730 740 750
RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS
760 770 780 790 800
KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
810 820 830 840 850
KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG
860 870
EESDPKRLEI ELRNKALESL KAKKGISH
Length:878
Mass (Da):100,479
Last modified:October 1, 2002 - v1
Checksum:iAB236ED2854D760B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY125501 mRNA. Translation: AAM78093.1.
BT000633 mRNA. Translation: AAN18199.1.
CP002685 Genomic DNA. Translation: AEC08223.1.
RefSeqiNP_180484.2. NM_128477.3.
UniGeneiAt.25482.

Genome annotation databases

EnsemblPlantsiAT2G29210.1; AT2G29210.1; AT2G29210.
GeneIDi817470.
KEGGiath:AT2G29210.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY125501 mRNA. Translation: AAM78093.1.
BT000633 mRNA. Translation: AAN18199.1.
CP002685 Genomic DNA. Translation: AEC08223.1.
RefSeqiNP_180484.2. NM_128477.3.
UniGeneiAt.25482.

3D structure databases

ProteinModelPortaliQ8L7W3.
SMRiQ8L7W3. Positions 29-133.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ8L7W3. 5 interactions.
STRINGi3702.AT2G29210.1-P.

Proteomic databases

PaxDbiQ8L7W3.
PRIDEiQ8L7W3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G29210.1; AT2G29210.1; AT2G29210.
GeneIDi817470.
KEGGiath:AT2G29210.

Organism-specific databases

TAIRiAT2G29210.

Phylogenomic databases

eggNOGiNOG242213.
HOGENOMiHOG000148632.
InParanoidiQ8L7W3.
KOiK13171.
OMAiIRPWIAN.

Enzyme and pathway databases

ReactomeiREACT_281290. mRNA 3'-end processing.
REACT_291299. mRNA Splicing - Major Pathway.

Miscellaneous databases

PROiQ8L7W3.

Gene expression databases

ExpressionAtlasiQ8L7W3. baseline and differential.
GenevestigatoriQ8L7W3.

Family and domain databases

Gene3Di1.20.1390.10. 1 hit.
InterProiIPR002483. PWI_dom.
[Graphical view]
PfamiPF01480. PWI. 1 hit.
[Graphical view]
SMARTiSM00311. PWI. 1 hit.
[Graphical view]
SUPFAMiSSF101233. SSF101233. 1 hit.
PROSITEiPS51025. PWI. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
  3. Cited for: NUCLEOTIDE SEQUENCE.
  4. "Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism."
    de la Fuente van Bentem S., Anrather D., Roitinger E., Djamei A., Hufnagl T., Barta A., Csaszar E., Dohnal I., Lecourieux D., Hirt H.
    Nucleic Acids Res. 34:3267-3278(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  5. "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana."
    Jones A.M., MacLean D., Studholme D.J., Serna-Sanz A., Andreasson E., Rathjen J.P., Peck S.C.
    J. Proteomics 72:439-451(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  6. "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks."
    Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A., Grossmann J., Gruissem W., Baginsky S.
    Plant Physiol. 150:889-903(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  7. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  8. The Arabidopsis Information Resource (TAIR)
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ8L7W3_ARATH
AccessioniPrimary (citable) accession number: Q8L7W3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: April 1, 2015
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.