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Protein

60S ribosomal protein L5-2

Gene

RPL5B

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

This protein binds 5S RNA.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-OSA-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-OSA-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-OSA-72689. Formation of a pool of free 40S subunits.
R-OSA-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-OSA-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-OSA-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L5-2
Gene namesi
Name:RPL5B
Ordered Locus Names:Os01g0896700, LOC_Os01g67134
ORF Names:OsJ_04400Imported, P0674H09.11, P0696G06.29
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 30430460S ribosomal protein L5-2PRO_0000131448Add
BLAST

Proteomic databases

PaxDbiQ8L4L4.

Expressioni

Gene expression databases

GenevisibleiQ8L4L4. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os01g67126.1.

Structurei

3D structure databases

ProteinModelPortaliQ8L4L4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L18P family.Curated

Phylogenomic databases

eggNOGiKOG0875. Eukaryota.
COG0256. LUCA.

Family and domain databases

HAMAPiMF_01337_A. Ribosomal_L18_A.
InterProiIPR005485. Rbsml_L5_euk/L18_arc.
IPR025607. Rbsml_L5e/L18P_C.
[Graphical view]
PANTHERiPTHR23410. PTHR23410. 1 hit.
PfamiPF14204. Ribosomal_L18_c. 1 hit.
PF17144. Ribosomal_L5e. 1 hit.
[Graphical view]
PRINTSiPR00058. RIBOSOMALL5.

Sequencei

Sequence statusi: Complete.

Q8L4L4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGGFVKTQKT HAYFKRFQVK FKRRRQGKTD YRARIRLTNQ DKNKYNTPKY
60 70 80 90 100
RFVVRFTNKD ITAQIVYATI AGDIVMAAAY SHELPRYGLE VGLTNYAAAY
110 120 130 140 150
CTGLLLARRV LTLRGLDQEY EGNVEATGED YYVEPADERR PFRALLDVGL
160 170 180 190 200
IRTTTGNRVF GALKGALDGG LDIPHSDKRF AGFKKDEKQL DSDIHRKYIY
210 220 230 240 250
GGHVADYMRS MAEEEPEKFQ AHFSEYLKKG IDADGMESLY KKVHAAIRAD
260 270 280 290 300
PTMAKSTKKE PATHKRYNLK KLTYEQRKAS LVERLNALNS SAGADDDDEE

EDDE
Length:304
Mass (Da):34,737
Last modified:May 11, 2016 - v2
Checksum:i406206505BE0E2AE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU267958 mRNA. Translation: ACA50480.1.
AP003316 Genomic DNA. Translation: BAC06272.1.
AP003349 Genomic DNA. Translation: BAD82173.1.
AP014957 Genomic DNA. Translation: BAS75705.1.
CM000138 Genomic DNA. Translation: EEE55807.1.
RefSeqiXP_015614983.1. XM_015759497.1.
UniGeneiOs.65163.
Os.85631.

Genome annotation databases

EnsemblPlantsiOS01T0896700-00; OS01T0896700-00; OS01G0896700.
GeneIDi9271934.
GrameneiOS01T0896700-00; OS01T0896700-00; OS01G0896700.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU267958 mRNA. Translation: ACA50480.1.
AP003316 Genomic DNA. Translation: BAC06272.1.
AP003349 Genomic DNA. Translation: BAD82173.1.
AP014957 Genomic DNA. Translation: BAS75705.1.
CM000138 Genomic DNA. Translation: EEE55807.1.
RefSeqiXP_015614983.1. XM_015759497.1.
UniGeneiOs.65163.
Os.85631.

3D structure databases

ProteinModelPortaliQ8L4L4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os01g67126.1.

Proteomic databases

PaxDbiQ8L4L4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS01T0896700-00; OS01T0896700-00; OS01G0896700.
GeneIDi9271934.
GrameneiOS01T0896700-00; OS01T0896700-00; OS01G0896700.

Phylogenomic databases

eggNOGiKOG0875. Eukaryota.
COG0256. LUCA.

Enzyme and pathway databases

ReactomeiR-OSA-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-OSA-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-OSA-72689. Formation of a pool of free 40S subunits.
R-OSA-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-OSA-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-OSA-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Gene expression databases

GenevisibleiQ8L4L4. OS.

Family and domain databases

HAMAPiMF_01337_A. Ribosomal_L18_A.
InterProiIPR005485. Rbsml_L5_euk/L18_arc.
IPR025607. Rbsml_L5e/L18P_C.
[Graphical view]
PANTHERiPTHR23410. PTHR23410. 1 hit.
PfamiPF14204. Ribosomal_L18_c. 1 hit.
PF17144. Ribosomal_L5e. 1 hit.
[Graphical view]
PRINTSiPR00058. RIBOSOMALL5.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning of the 60S ribosomal protein L5 genes in rice."
    Yoon U.H., Kim Y.H.
    Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Ilpoombyeo.
  2. "The genome sequence and structure of rice chromosome 1."
    Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
    , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
    Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  5. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiRL52_ORYSJ
AccessioniPrimary (citable) accession number: Q8L4L4
Secondary accession number(s): B7SDE4, Q5N8N3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 23, 2004
Last sequence update: May 11, 2016
Last modified: June 8, 2016
This is version 65 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.