Q8L4L4 (RL52_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
60S ribosomal protein L5-2

Gene names

Name:	RPL5B
Ordered Locus Names:	Os01g0896700, LOC_Os01g67134
ORF Names:	P0674H09.11, P0696G06.29

Organism

Oryza sativa subsp. japonica (Rice) [Reference proteome]

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	304 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	This protein binds 5S RNA By similarity.
Sequence similarities	Belongs to the ribosomal protein L18P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	adaxial/abaxial pattern specification Inferred from electronic annotation. Source: EnsemblPlants/Gramene cell proliferation Inferred from electronic annotation. Source: EnsemblPlants/Gramene leaf morphogenesis Inferred from electronic annotation. Source: EnsemblPlants/Gramene root morphogenesis Inferred from electronic annotation. Source: EnsemblPlants/Gramene translation Inferred from electronic annotation. Source: InterPro
Cellular_component	chloroplast Inferred from electronic annotation. Source: EnsemblPlants/Gramene cytosolic large ribosomal subunit Inferred from electronic annotation. Source: EnsemblPlants/Gramene nucleolus Inferred from electronic annotation. Source: EnsemblPlants/Gramene plasma membrane Inferred from electronic annotation. Source: EnsemblPlants/Gramene vacuole Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	5S rRNA binding Inferred from electronic annotation. Source: InterPro structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 304	304	60S ribosomal protein L5-2		PRO_0000131448
Experimental info
	Sequence conflict	1 – 4	4	MSLQ → M in BAD82173. Ref.1
	Sequence conflict	56	1	V → VVRF in BAD82173. Ref.1

Sequences

	Sequence		Length	Mass (Da)
	Q8L4L4 [UniParc]. Last modified October 1, 2002. Version 1. Checksum: 6C0307C860FB6905	FASTA	304	34,663
	10 20 30 40 50 60 MSLQGGFVKT QKTHAYFKRF QVKFKRRRQG KTDYRARIRL TNQDKNKYNT PKYRFVTNKD 70 80 90 100 110 120 ITAQIVYATI AGDIVMAAAY SHELPRYGLE VGLTNYAAAY CTGLLLARRV LTLRGLDQEY 130 140 150 160 170 180 EGNVEATGED YYVEPADERR PFRALLDVGL IRTTTGNRVF GALKGALDGG LDIPHSDKRF 190 200 210 220 230 240 AGFKKDEKQL DSDIHRKYIY GGHVADYMRS MAEEEPEKFQ AHFSEYLKKG IDADGMESLY 250 260 270 280 290 300 KKVHAAIRAD PTMAKSTKKE PATHKRYNLK KLTYEQRKAS LVERLNALNS SAGADDDDEE EDDE

References

[1]

"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP003316 Genomic DNA. Translation: BAC06272.1. AP003349 Genomic DNA. Translation: BAD82173.1.
3D structure databases
ProteinModelPortal	Q8L4L4.
SMR	Q8L4L4. Positions 15-247.
ModBase	Search...
Proteomic databases
PaxDb	Q8L4L4.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
Gramene	Q8L4L4.
Phylogenomic databases
eggNOG	COG0256.
Gene expression databases
ArrayExpress	Q8L4L4.
Family and domain databases
InterPro	IPR005485. Rbsml_L5_euk/L18_arc. IPR025607. Rbsml_L5e/L18P_C. IPR005484. Ribosomal_L18/L5. [Graphical view]
PANTHER	PTHR23410. PTHR23410. 1 hit.
Pfam	PF14204. Ribosomal_L18_c. 1 hit. PF00861. Ribosomal_L18p. 1 hit. [Graphical view]
PRINTS	PR00058. RIBOSOMALL5.
ProtoNet	Search...

Entry information

Entry name

RL52_ORYSJ

Accession

Primary (citable) accession number: Q8L4L4
Secondary accession number(s): Q5N8N3

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 23, 2004
Last sequence update:	October 1, 2002
Last modified:	April 3, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program