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Q8L4L4

- RL52_ORYSJ

UniProt

Q8L4L4 - RL52_ORYSJ

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Protein

60S ribosomal protein L5-2

Gene
RPL5B, Os01g0896700, LOC_Os01g67134, P0674H09.11, P0696G06.29
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

This protein binds 5S RNA By similarity.UniRule annotation

GO - Molecular functioni

  1. 5S rRNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. adaxial/abaxial pattern specification Source: EnsemblPlants/Gramene
  2. cell proliferation Source: EnsemblPlants/Gramene
  3. leaf morphogenesis Source: EnsemblPlants/Gramene
  4. root morphogenesis Source: EnsemblPlants/Gramene
  5. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiREACT_208864. SRP-dependent cotranslational protein targeting to membrane.
REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L5-2
Gene namesi
Name:RPL5B
Ordered Locus Names:Os01g0896700, LOC_Os01g67134
ORF Names:P0674H09.11, P0696G06.29
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 1

Organism-specific databases

GrameneiQ8L4L4.

Subcellular locationi

GO - Cellular componenti

  1. chloroplast Source: EnsemblPlants/Gramene
  2. cytosolic large ribosomal subunit Source: EnsemblPlants/Gramene
  3. nucleolus Source: EnsemblPlants/Gramene
  4. plasma membrane Source: EnsemblPlants/Gramene
  5. vacuole Source: EnsemblPlants/Gramene
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 30430460S ribosomal protein L5-2UniRule annotationPRO_0000131448Add
BLAST

Proteomic databases

PaxDbiQ8L4L4.

Structurei

3D structure databases

ProteinModelPortaliQ8L4L4.
SMRiQ8L4L4. Positions 15-247.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0256.

Family and domain databases

HAMAPiMF_01337_A. Ribosomal_L18_A.
InterProiIPR005485. Rbsml_L5_euk/L18_arc.
IPR025607. Rbsml_L5e/L18P_C.
IPR005484. Ribosomal_L18/L5.
[Graphical view]
PANTHERiPTHR23410. PTHR23410. 1 hit.
PfamiPF14204. Ribosomal_L18_c. 1 hit.
PF00861. Ribosomal_L18p. 1 hit.
[Graphical view]
PRINTSiPR00058. RIBOSOMALL5.

Sequencei

Sequence statusi: Complete.

Q8L4L4-1 [UniParc]FASTAAdd to Basket

« Hide

MSLQGGFVKT QKTHAYFKRF QVKFKRRRQG KTDYRARIRL TNQDKNKYNT    50
PKYRFVTNKD ITAQIVYATI AGDIVMAAAY SHELPRYGLE VGLTNYAAAY 100
CTGLLLARRV LTLRGLDQEY EGNVEATGED YYVEPADERR PFRALLDVGL 150
IRTTTGNRVF GALKGALDGG LDIPHSDKRF AGFKKDEKQL DSDIHRKYIY 200
GGHVADYMRS MAEEEPEKFQ AHFSEYLKKG IDADGMESLY KKVHAAIRAD 250
PTMAKSTKKE PATHKRYNLK KLTYEQRKAS LVERLNALNS SAGADDDDEE 300
EDDE 304
Length:304
Mass (Da):34,663
Last modified:October 1, 2002 - v1
Checksum:i6C0307C860FB6905
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti1 – 44MSLQ → M in BAD82173. 1 Publication
Sequence conflicti56 – 561V → VVRF in BAD82173. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP003316 Genomic DNA. Translation: BAC06272.1.
AP003349 Genomic DNA. Translation: BAD82173.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP003316 Genomic DNA. Translation: BAC06272.1 .
AP003349 Genomic DNA. Translation: BAD82173.1 .

3D structure databases

ProteinModelPortali Q8L4L4.
SMRi Q8L4L4. Positions 15-247.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PaxDbi Q8L4L4.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

Gramenei Q8L4L4.

Phylogenomic databases

eggNOGi COG0256.

Enzyme and pathway databases

Reactomei REACT_208864. SRP-dependent cotranslational protein targeting to membrane.
REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Family and domain databases

HAMAPi MF_01337_A. Ribosomal_L18_A.
InterProi IPR005485. Rbsml_L5_euk/L18_arc.
IPR025607. Rbsml_L5e/L18P_C.
IPR005484. Ribosomal_L18/L5.
[Graphical view ]
PANTHERi PTHR23410. PTHR23410. 1 hit.
Pfami PF14204. Ribosomal_L18_c. 1 hit.
PF00861. Ribosomal_L18p. 1 hit.
[Graphical view ]
PRINTSi PR00058. RIBOSOMALL5.
ProtoNeti Search...

Publicationsi

  1. "The genome sequence and structure of rice chromosome 1."
    Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
    , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
    Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiRL52_ORYSJ
AccessioniPrimary (citable) accession number: Q8L4L4
Secondary accession number(s): Q5N8N3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 23, 2004
Last sequence update: October 1, 2002
Last modified: September 3, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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