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Protein

60S ribosomal protein L5-2

Gene

RPL5B

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein binds 5S RNA.By similarity

GO - Molecular functioni

  1. 5S rRNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiREACT_284541. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_284743. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_294537. SRP-dependent cotranslational protein targeting to membrane.
REACT_302001. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_304736. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_320638. Formation of a pool of free 40S subunits.
REACT_322398. Eukaryotic Translation Termination.
REACT_323380. Peptide chain elongation.

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L5-2
Gene namesi
Name:RPL5B
Ordered Locus Names:Os01g0896700, LOC_Os01g67134
ORF Names:P0674H09.11, P0696G06.29
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763 Componenti: Chromosome 1

Organism-specific databases

GrameneiQ8L4L4.

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 30430460S ribosomal protein L5-2PRO_0000131448Add
BLAST

Proteomic databases

PaxDbiQ8L4L4.

Expressioni

Gene expression databases

ExpressionAtlasiQ8L4L4. baseline.

Structurei

3D structure databases

ProteinModelPortaliQ8L4L4.
SMRiQ8L4L4. Positions 15-247.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L18P family.Curated

Phylogenomic databases

eggNOGiCOG0256.

Family and domain databases

HAMAPiMF_01337_A. Ribosomal_L18_A.
InterProiIPR005485. Rbsml_L5_euk/L18_arc.
IPR025607. Rbsml_L5e/L18P_C.
IPR005484. Ribosomal_L18/L5.
[Graphical view]
PANTHERiPTHR23410. PTHR23410. 1 hit.
PfamiPF14204. Ribosomal_L18_c. 1 hit.
PF00861. Ribosomal_L18p. 1 hit.
[Graphical view]
PRINTSiPR00058. RIBOSOMALL5.

Sequencei

Sequence statusi: Complete.

Q8L4L4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLQGGFVKT QKTHAYFKRF QVKFKRRRQG KTDYRARIRL TNQDKNKYNT
60 70 80 90 100
PKYRFVTNKD ITAQIVYATI AGDIVMAAAY SHELPRYGLE VGLTNYAAAY
110 120 130 140 150
CTGLLLARRV LTLRGLDQEY EGNVEATGED YYVEPADERR PFRALLDVGL
160 170 180 190 200
IRTTTGNRVF GALKGALDGG LDIPHSDKRF AGFKKDEKQL DSDIHRKYIY
210 220 230 240 250
GGHVADYMRS MAEEEPEKFQ AHFSEYLKKG IDADGMESLY KKVHAAIRAD
260 270 280 290 300
PTMAKSTKKE PATHKRYNLK KLTYEQRKAS LVERLNALNS SAGADDDDEE

EDDE
Length:304
Mass (Da):34,663
Last modified:October 1, 2002 - v1
Checksum:i6C0307C860FB6905
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti1 – 44MSLQ → M in BAD82173 (PubMed:12447438).Curated
Sequence conflicti56 – 561V → VVRF in BAD82173 (PubMed:12447438).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003316 Genomic DNA. Translation: BAC06272.1.
AP003349 Genomic DNA. Translation: BAD82173.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003316 Genomic DNA. Translation: BAC06272.1.
AP003349 Genomic DNA. Translation: BAD82173.1.

3D structure databases

ProteinModelPortaliQ8L4L4.
SMRiQ8L4L4. Positions 15-247.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiQ8L4L4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

GrameneiQ8L4L4.

Phylogenomic databases

eggNOGiCOG0256.

Enzyme and pathway databases

ReactomeiREACT_284541. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_284743. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_294537. SRP-dependent cotranslational protein targeting to membrane.
REACT_302001. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_304736. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_320638. Formation of a pool of free 40S subunits.
REACT_322398. Eukaryotic Translation Termination.
REACT_323380. Peptide chain elongation.

Gene expression databases

ExpressionAtlasiQ8L4L4. baseline.

Family and domain databases

HAMAPiMF_01337_A. Ribosomal_L18_A.
InterProiIPR005485. Rbsml_L5_euk/L18_arc.
IPR025607. Rbsml_L5e/L18P_C.
IPR005484. Ribosomal_L18/L5.
[Graphical view]
PANTHERiPTHR23410. PTHR23410. 1 hit.
PfamiPF14204. Ribosomal_L18_c. 1 hit.
PF00861. Ribosomal_L18p. 1 hit.
[Graphical view]
PRINTSiPR00058. RIBOSOMALL5.
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence and structure of rice chromosome 1."
    Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
    , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
    Nature 420:312-316(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiRL52_ORYSJ
AccessioniPrimary (citable) accession number: Q8L4L4
Secondary accession number(s): Q5N8N3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 23, 2004
Last sequence update: October 1, 2002
Last modified: April 1, 2015
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.