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Q8L4L4

- RL52_ORYSJ

UniProt

Q8L4L4 - RL52_ORYSJ

Protein

60S ribosomal protein L5-2

Gene

RPL5B

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (01 Oct 2002)
      Previous versions | rss
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    Functioni

    This protein binds 5S RNA.By similarity

    GO - Molecular functioni

    1. 5S rRNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. adaxial/abaxial pattern specification Source: EnsemblPlants/Gramene
    2. cell proliferation Source: EnsemblPlants/Gramene
    3. leaf morphogenesis Source: EnsemblPlants/Gramene
    4. root morphogenesis Source: EnsemblPlants/Gramene
    5. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    ReactomeiREACT_208864. SRP-dependent cotranslational protein targeting to membrane.
    REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S ribosomal protein L5-2
    Gene namesi
    Name:RPL5B
    Ordered Locus Names:Os01g0896700, LOC_Os01g67134
    ORF Names:P0674H09.11, P0696G06.29
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 1

    Organism-specific databases

    GrameneiQ8L4L4.

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast Source: EnsemblPlants/Gramene
    2. cytosolic large ribosomal subunit Source: EnsemblPlants/Gramene
    3. nucleolus Source: EnsemblPlants/Gramene
    4. plasma membrane Source: EnsemblPlants/Gramene
    5. vacuole Source: EnsemblPlants/Gramene

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 30430460S ribosomal protein L5-2PRO_0000131448Add
    BLAST

    Proteomic databases

    PaxDbiQ8L4L4.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8L4L4.
    SMRiQ8L4L4. Positions 15-247.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L18P family.Curated

    Phylogenomic databases

    eggNOGiCOG0256.

    Family and domain databases

    HAMAPiMF_01337_A. Ribosomal_L18_A.
    InterProiIPR005485. Rbsml_L5_euk/L18_arc.
    IPR025607. Rbsml_L5e/L18P_C.
    IPR005484. Ribosomal_L18/L5.
    [Graphical view]
    PANTHERiPTHR23410. PTHR23410. 1 hit.
    PfamiPF14204. Ribosomal_L18_c. 1 hit.
    PF00861. Ribosomal_L18p. 1 hit.
    [Graphical view]
    PRINTSiPR00058. RIBOSOMALL5.

    Sequencei

    Sequence statusi: Complete.

    Q8L4L4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSLQGGFVKT QKTHAYFKRF QVKFKRRRQG KTDYRARIRL TNQDKNKYNT    50
    PKYRFVTNKD ITAQIVYATI AGDIVMAAAY SHELPRYGLE VGLTNYAAAY 100
    CTGLLLARRV LTLRGLDQEY EGNVEATGED YYVEPADERR PFRALLDVGL 150
    IRTTTGNRVF GALKGALDGG LDIPHSDKRF AGFKKDEKQL DSDIHRKYIY 200
    GGHVADYMRS MAEEEPEKFQ AHFSEYLKKG IDADGMESLY KKVHAAIRAD 250
    PTMAKSTKKE PATHKRYNLK KLTYEQRKAS LVERLNALNS SAGADDDDEE 300
    EDDE 304
    Length:304
    Mass (Da):34,663
    Last modified:October 1, 2002 - v1
    Checksum:i6C0307C860FB6905
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti1 – 44MSLQ → M in BAD82173. (PubMed:12447438)Curated
    Sequence conflicti56 – 561V → VVRF in BAD82173. (PubMed:12447438)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP003316 Genomic DNA. Translation: BAC06272.1.
    AP003349 Genomic DNA. Translation: BAD82173.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP003316 Genomic DNA. Translation: BAC06272.1 .
    AP003349 Genomic DNA. Translation: BAD82173.1 .

    3D structure databases

    ProteinModelPortali Q8L4L4.
    SMRi Q8L4L4. Positions 15-247.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PaxDbi Q8L4L4.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    Gramenei Q8L4L4.

    Phylogenomic databases

    eggNOGi COG0256.

    Enzyme and pathway databases

    Reactomei REACT_208864. SRP-dependent cotranslational protein targeting to membrane.
    REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Family and domain databases

    HAMAPi MF_01337_A. Ribosomal_L18_A.
    InterProi IPR005485. Rbsml_L5_euk/L18_arc.
    IPR025607. Rbsml_L5e/L18P_C.
    IPR005484. Ribosomal_L18/L5.
    [Graphical view ]
    PANTHERi PTHR23410. PTHR23410. 1 hit.
    Pfami PF14204. Ribosomal_L18_c. 1 hit.
    PF00861. Ribosomal_L18p. 1 hit.
    [Graphical view ]
    PRINTSi PR00058. RIBOSOMALL5.
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence and structure of rice chromosome 1."
      Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
      , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
      Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiRL52_ORYSJ
    AccessioniPrimary (citable) accession number: Q8L4L4
    Secondary accession number(s): Q5N8N3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 23, 2004
    Last sequence update: October 1, 2002
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3