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Q8KRT5 (DEOD_XENNA) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Purine nucleoside phosphorylase DeoD-type

Short name=PNP
EC=2.4.2.1
Gene names
Name:deoD
Ordered Locus Names:XNC1_3804
OrganismXenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6) [Complete proteome] [HAMAP]
Taxonomic identifier406817 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeXenorhabdus

Protein attributes

Sequence length238 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627

Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627

Subunit structure

Homohexamer By similarity. HAMAP-Rule MF_01627

Sequence similarities

Belongs to the PNP/UDP phosphorylase family.

Ontologies

Keywords
   Molecular functionGlycosyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpurine nucleoside metabolic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionpurine-nucleoside phosphorylase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 238238Purine nucleoside phosphorylase DeoD-type HAMAP-Rule MF_01627
PRO_0000063180

Sequences

Sequence LengthMass (Da)Tools
Q8KRT5 [UniParc].

Last modified October 1, 2002. Version 1.
Checksum: 6B2D984DE51441CA

FASTA23826,006
        10         20         30         40         50         60 
MATPHINAEM GDFADVVLMP GDPLRAQYIA ETFLEDARQV NNVRGMLGFT GTYKGRRISV 

        70         80         90        100        110        120 
MGHGMGIPSC SIYAKELITE FGVKKIIRIG SCGAVSEDVK IRDVVIGMGA CTDSKVNRMR 

       130        140        150        160        170        180 
FKDHDFAAIA DFDLVRHAVD AAKAKNINTR VGNIFSVDLF YSPDPQMFDV MEKYGILGVE 

       190        200        210        220        230 
MEAAGIYGVA AEFGAKALAI CTVSDHIRTG EQTTAEERQH TFNDMIEIAL ESILLGDN 

« Hide

References

« Hide 'large scale' references
[1]"Unique organization and regulation of the mrx fimbrial operon in Xenorhabdus nematophila."
He H., Snyder H.A., Forst S.
Microbiology 150:1439-1446(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.
[2]"dTMP synthesis in Xenorhabdus nematophila."
Orchard S.S., Goodrich-Blair H.
Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.
[3]"Complete genome sequence of Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)."
Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S., Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P., Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S., Suen G.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF525420 Genomic DNA. Translation: AAM91930.1.
AY556400 Genomic DNA. Translation: AAT40584.1.
FN667742 Genomic DNA. Translation: CBJ91835.1.
RefSeqYP_003713927.1. NC_014228.1.

3D structure databases

ProteinModelPortalQ8KRT5.
SMRQ8KRT5. Positions 2-237.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ8KRT5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBJ91835; CBJ91835; XNC1_3804.
GeneID9433057.
KEGGxne:XNC1_3804.
PATRIC42467082. VBIXenNem38452_3486.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000274896.
KOK03784.

Enzyme and pathway databases

BioCycXNEM406817:GHY4-3774-MONOMER.

Family and domain databases

Gene3D3.40.50.1580. 1 hit.
HAMAPMF_01627. Pur_nucleosid_phosp.
InterProIPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR018016. Nucleoside_phosphorylase_CS.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view]
PANTHERPTHR21234. PTHR21234. 1 hit.
PfamPF01048. PNP_UDP_1. 1 hit.
[Graphical view]
SUPFAMSSF53167. SSF53167. 1 hit.
TIGRFAMsTIGR00107. deoD. 1 hit.
PROSITEPS01232. PNP_UDP_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameDEOD_XENNA
AccessionPrimary (citable) accession number: Q8KRT5
Secondary accession number(s): D3VB60
Entry history
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: October 1, 2002
Last modified: May 14, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families