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Q8KRT5

- DEOD_XENNA

UniProt

Q8KRT5 - DEOD_XENNA

Protein

Purine nucleoside phosphorylase DeoD-type

Gene

deoD

Organism
Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (01 Oct 2002)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
    Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

    GO - Molecular functioni

    1. purine-nucleoside phosphorylase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. purine nucleoside metabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Enzyme and pathway databases

    BioCyciXNEM406817:GHY4-3774-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Purine nucleoside phosphorylase DeoD-typeUniRule annotation (EC:2.4.2.1UniRule annotation)
    Short name:
    PNPUniRule annotation
    Gene namesi
    Name:deoDUniRule annotation
    Ordered Locus Names:XNC1_3804
    OrganismiXenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)
    Taxonomic identifieri406817 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeXenorhabdus
    ProteomesiUP000008075: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 238238Purine nucleoside phosphorylase DeoD-typePRO_0000063180Add
    BLAST

    Proteomic databases

    PRIDEiQ8KRT5.

    Interactioni

    Subunit structurei

    Homohexamer.UniRule annotation

    Structurei

    3D structure databases

    ProteinModelPortaliQ8KRT5.
    SMRiQ8KRT5. Positions 2-237.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PNP/UDP phosphorylase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000274896.
    KOiK03784.

    Family and domain databases

    Gene3Di3.40.50.1580. 1 hit.
    HAMAPiMF_01627. Pur_nucleosid_phosp.
    InterProiIPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view]
    PANTHERiPTHR21234. PTHR21234. 1 hit.
    PfamiPF01048. PNP_UDP_1. 1 hit.
    [Graphical view]
    SUPFAMiSSF53167. SSF53167. 1 hit.
    TIGRFAMsiTIGR00107. deoD. 1 hit.
    PROSITEiPS01232. PNP_UDP_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8KRT5-1 [UniParc]FASTAAdd to Basket

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    MATPHINAEM GDFADVVLMP GDPLRAQYIA ETFLEDARQV NNVRGMLGFT    50
    GTYKGRRISV MGHGMGIPSC SIYAKELITE FGVKKIIRIG SCGAVSEDVK 100
    IRDVVIGMGA CTDSKVNRMR FKDHDFAAIA DFDLVRHAVD AAKAKNINTR 150
    VGNIFSVDLF YSPDPQMFDV MEKYGILGVE MEAAGIYGVA AEFGAKALAI 200
    CTVSDHIRTG EQTTAEERQH TFNDMIEIAL ESILLGDN 238
    Length:238
    Mass (Da):26,006
    Last modified:October 1, 2002 - v1
    Checksum:i6B2D984DE51441CA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF525420 Genomic DNA. Translation: AAM91930.1.
    AY556400 Genomic DNA. Translation: AAT40584.1.
    FN667742 Genomic DNA. Translation: CBJ91835.1.
    RefSeqiWP_010846305.1. NC_014228.1.
    YP_003713927.1. NC_014228.1.

    Genome annotation databases

    EnsemblBacteriaiCBJ91835; CBJ91835; XNC1_3804.
    GeneIDi9433057.
    KEGGixne:XNC1_3804.
    PATRICi42467082. VBIXenNem38452_3486.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF525420 Genomic DNA. Translation: AAM91930.1 .
    AY556400 Genomic DNA. Translation: AAT40584.1 .
    FN667742 Genomic DNA. Translation: CBJ91835.1 .
    RefSeqi WP_010846305.1. NC_014228.1.
    YP_003713927.1. NC_014228.1.

    3D structure databases

    ProteinModelPortali Q8KRT5.
    SMRi Q8KRT5. Positions 2-237.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q8KRT5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CBJ91835 ; CBJ91835 ; XNC1_3804 .
    GeneIDi 9433057.
    KEGGi xne:XNC1_3804.
    PATRICi 42467082. VBIXenNem38452_3486.

    Phylogenomic databases

    HOGENOMi HOG000274896.
    KOi K03784.

    Enzyme and pathway databases

    BioCyci XNEM406817:GHY4-3774-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.1580. 1 hit.
    HAMAPi MF_01627. Pur_nucleosid_phosp.
    InterProi IPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view ]
    PANTHERi PTHR21234. PTHR21234. 1 hit.
    Pfami PF01048. PNP_UDP_1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53167. SSF53167. 1 hit.
    TIGRFAMsi TIGR00107. deoD. 1 hit.
    PROSITEi PS01232. PNP_UDP_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Unique organization and regulation of the mrx fimbrial operon in Xenorhabdus nematophila."
      He H., Snyder H.A., Forst S.
      Microbiology 150:1439-1446(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.
    2. "dTMP synthesis in Xenorhabdus nematophila."
      Orchard S.S., Goodrich-Blair H.
      Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.
    3. "Complete genome sequence of Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6)."
      Goodrich-Blair H., Barbazuk B., Bode H.B., Darby C., Du Z., Forst S., Gaudriault S., Goldman B.S., Goodner B., Henkhaus J., Latreille P., Medigue C., Miller N., Norton S., Ogier J.C., Rouy Z., Slater S., Suen G.
      Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6.

    Entry informationi

    Entry nameiDEOD_XENNA
    AccessioniPrimary (citable) accession number: Q8KRT5
    Secondary accession number(s): D3VB60
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 10, 2006
    Last sequence update: October 1, 2002
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3