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Protein

Probable pyruvoyl-dependent arginine decarboxylase

Gene

pdaD

Organism
Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) (Chlorobium tepidum)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

L-arginine = agmatine + CO2.UniRule annotation

Cofactori

pyruvateUniRule annotationNote: Binds 1 pyruvoyl group covalently per subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDecarboxylase, Lyase
LigandPyruvate

Enzyme and pathway databases

BioCyciCTEP194439:G1FZE-587-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Probable pyruvoyl-dependent arginine decarboxylaseUniRule annotation (EC:4.1.1.19UniRule annotation)
Short name:
PvlArgDCUniRule annotation
Cleaved into the following 2 chains:
Pyruvoyl-dependent arginine decarboxylase subunit betaUniRule annotation
Pyruvoyl-dependent arginine decarboxylase subunit alphaUniRule annotation
Gene namesi
Name:pdaDUniRule annotation
Ordered Locus Names:CT0562
OrganismiChlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) (Chlorobium tepidum)
Taxonomic identifieri194439 [NCBI]
Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeChlorobaculum
Proteomesi
  • UP000001007 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000233401 – 42Pyruvoyl-dependent arginine decarboxylase subunit betaUniRule annotationAdd BLAST42
ChainiPRO_000002334143 – 181Pyruvoyl-dependent arginine decarboxylase subunit alphaUniRule annotationAdd BLAST139

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei43Pyruvic acid (Ser)UniRule annotation1

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei42 – 43Cleavage (non-hydrolytic)UniRule annotation2

Proteomic databases

PRIDEiQ8KEX0

Interactioni

Protein-protein interaction databases

STRINGi194439.CT0562

Structurei

3D structure databases

ProteinModelPortaliQ8KEX0
SMRiQ8KEX0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PdaD family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108JEJ Bacteria
COG1945 LUCA
HOGENOMiHOG000012204
KOiK02626
OMAiSEHHSFG
OrthoDBiPOG091H1TJJ

Family and domain databases

Gene3Di3.50.20.10, 1 hit
HAMAPiMF_01404 PvlArgDC, 1 hit
InterProiView protein in InterPro
IPR016104 Pyr-dep_his/arg-deCO2ase
IPR016105 Pyr-dep_his/arg-deCO2ase_sand
IPR002724 Pyruvoyl-dep_arg_deCO2ase
PANTHERiPTHR40438 PTHR40438, 1 hit
PfamiView protein in Pfam
PF01862 PvlArgDC, 1 hit
PIRSFiPIRSF005216 Pyruvoyl-dep_arg_deCO2ase, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010449 Pyruvoyl-dep_arg_deCO2ase, 1 hit
SFLDiSFLDG01170 Pyruvoyl-dependent_arginine_de, 1 hit
SUPFAMiSSF56271 SSF56271, 1 hit
TIGRFAMsiTIGR00286 TIGR00286, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8KEX0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSFVPTKVFF TKGVGRHKEY LSSFELALRD AKIEKCNLVT VSSIFPPKCE
60 70 80 90 100
RISVEEGLKH LKPGQITFAV MARNSTNENN RLISASVGVA LPADESQYGY
110 120 130 140 150
LSEHHPYGET AEQSGEYAED LAATMLATTL GIEFDPNKDW DEREGIYKMS
160 170 180
GKIVNSFNIT ESAEGETGMW TTVISCAVLL P
Length:181
Mass (Da):19,976
Last modified:October 1, 2002 - v1
Checksum:i85D4571EACD44FF6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006470 Genomic DNA Translation: AAM71804.1
RefSeqiNP_661462.1, NC_002932.3
WP_010932249.1, NC_002932.3

Genome annotation databases

EnsemblBacteriaiAAM71804; AAM71804; CT0562
GeneIDi1006157
KEGGicte:CT0562
PATRICifig|194439.7.peg.526

Similar proteinsi

Entry informationi

Entry nameiPDAD_CHLTE
AccessioniPrimary (citable) accession number: Q8KEX0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 11, 2003
Last sequence update: October 1, 2002
Last modified: March 28, 2018
This is version 85 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health