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Q8K9V2

- YCHF_BUCAP

UniProt

Q8K9V2 - YCHF_BUCAP

Protein

Ribosome-binding ATPase YchF

Gene

ychF

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 85 (01 Oct 2014)
      Sequence version 3 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.UniRule annotation

    Cofactori

    Magnesium.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi16 – 161MagnesiumBy similarity
    Metal bindingi36 – 361MagnesiumBy similarity

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi12 – 176ATPUniRule annotation

    GO - Molecular functioni

    1. ATPase activity Source: UniProtKB-HAMAP
    2. ATP binding Source: UniProtKB-HAMAP
    3. GTP binding Source: InterPro
    4. metal ion binding Source: UniProtKB-KW
    5. ribosomal large subunit binding Source: UniProtKB-HAMAP
    6. ribosome binding Source: UniProtKB-HAMAP

    Keywords - Ligandi

    ATP-binding, Magnesium, Metal-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciBAPH198804:GHMG-195-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribosome-binding ATPase YchFUniRule annotation
    Gene namesi
    Name:ychFUniRule annotation
    Synonyms:engD
    Ordered Locus Names:BUsg_185
    OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
    Taxonomic identifieri198804 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000000416: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 362361Ribosome-binding ATPase YchFPRO_0000201673Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi198804.BUsg185.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8K9V2.
    SMRiQ8K9V2. Positions 1-362.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini3 – 255253OBG-type GAdd
    BLAST

    Sequence similaritiesi

    Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. YchF/OLA1 subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0012.
    KOiK06942.
    OMAiIPTTMEF.
    OrthoDBiEOG6NSGJC.

    Family and domain databases

    Gene3Di1.10.150.300. 1 hit.
    3.10.20.30. 1 hit.
    3.40.50.300. 2 hits.
    HAMAPiMF_00944. YchF_OLA1_ATPase.
    InterProiIPR004396. ATPase_YchF/OLA1.
    IPR012675. Beta-grasp_dom.
    IPR013029. DUF933.
    IPR006073. GTP_binding_domain.
    IPR027417. P-loop_NTPase.
    IPR012676. TGS-like.
    IPR023192. TGS-like_dom.
    [Graphical view]
    PfamiPF01926. MMR_HSR1. 1 hit.
    PF06071. YchF-GTPase_C. 1 hit.
    [Graphical view]
    PIRSFiPIRSF006641. CHP00092. 1 hit.
    PRINTSiPR00326. GTP1OBG.
    SUPFAMiSSF52540. SSF52540. 1 hit.
    SSF81271. SSF81271. 1 hit.
    TIGRFAMsiTIGR00092. TIGR00092. 1 hit.
    PROSITEiPS51710. G_OBG. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q8K9V2-1 [UniParc]FASTAAdd to Basket

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    MGFKCGIIGL PNVGKSTLFN VLTKGNSAVA NFPFCTIKPN IGIVSVPDNR    50
    INNLSKIILP KKITNAFIEF VDIAGLVKGA SKGEGLGNQF LSNIRDTHAI 100
    AHVVRCFKDD NVSHIYNQLQ PKIDVDIINS ELILADFETC EKSILKLQKK 150
    LNFNKKEIEE KLVVLSKCLD HLKKFLMLKT LELDENEKKI ISYLRFLTLK 200
    PTMYIANINE QKESCFFLNE LEKMAKKEGS SVIPINSNLE LDLIKMNEDE 250
    QKYFMKSFNI TNLGLNNIIK SGYKILNLIT FFTAGIKEVR AWAIPNGSTS 300
    LQAADKIHSD FRRGFIRAQI INYLDFIKYK SETKVKEAGK YRSEGKFYQI 350
    QDGDIINFLF NV 362
    Length:362
    Mass (Da):41,124
    Last modified:January 23, 2007 - v3
    Checksum:i8D5C9E45B109F726
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM67750.1.
    RefSeqiNP_660539.1. NC_004061.1.
    WP_011053717.1. NC_004061.1.

    Genome annotation databases

    EnsemblBacteriaiAAM67750; AAM67750; BUsg_185.
    GeneIDi1005382.
    KEGGibas:BUsg185.
    PATRICi21247153. VBIBucAph100086_0190.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM67750.1 .
    RefSeqi NP_660539.1. NC_004061.1.
    WP_011053717.1. NC_004061.1.

    3D structure databases

    ProteinModelPortali Q8K9V2.
    SMRi Q8K9V2. Positions 1-362.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 198804.BUsg185.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAM67750 ; AAM67750 ; BUsg_185 .
    GeneIDi 1005382.
    KEGGi bas:BUsg185.
    PATRICi 21247153. VBIBucAph100086_0190.

    Phylogenomic databases

    eggNOGi COG0012.
    KOi K06942.
    OMAi IPTTMEF.
    OrthoDBi EOG6NSGJC.

    Enzyme and pathway databases

    BioCyci BAPH198804:GHMG-195-MONOMER.

    Family and domain databases

    Gene3Di 1.10.150.300. 1 hit.
    3.10.20.30. 1 hit.
    3.40.50.300. 2 hits.
    HAMAPi MF_00944. YchF_OLA1_ATPase.
    InterProi IPR004396. ATPase_YchF/OLA1.
    IPR012675. Beta-grasp_dom.
    IPR013029. DUF933.
    IPR006073. GTP_binding_domain.
    IPR027417. P-loop_NTPase.
    IPR012676. TGS-like.
    IPR023192. TGS-like_dom.
    [Graphical view ]
    Pfami PF01926. MMR_HSR1. 1 hit.
    PF06071. YchF-GTPase_C. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF006641. CHP00092. 1 hit.
    PRINTSi PR00326. GTP1OBG.
    SUPFAMi SSF52540. SSF52540. 1 hit.
    SSF81271. SSF81271. 1 hit.
    TIGRFAMsi TIGR00092. TIGR00092. 1 hit.
    PROSITEi PS51710. G_OBG. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Sg.

    Entry informationi

    Entry nameiYCHF_BUCAP
    AccessioniPrimary (citable) accession number: Q8K9V2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 15, 2002
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 85 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Buchnera aphidicola (subsp. Schizaphis graminum)
      Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3