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Protein

Ribosome-binding ATPase YchF

Gene

ychF

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.UniRule annotation

Cofactori

Mg2+By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi16MagnesiumBy similarity1
Metal bindingi36MagnesiumBy similarity1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi12 – 17ATPUniRule annotation6

GO - Molecular functioni

Keywordsi

LigandATP-binding, Magnesium, Metal-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciBAPH198804:G1FZU-199-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome-binding ATPase YchFUniRule annotation
Gene namesi
Name:ychFUniRule annotation
Synonyms:engD
Ordered Locus Names:BUsg_185
OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Taxonomic identifieri198804 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesErwiniaceaeBuchnera
Proteomesi
  • UP000000416 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00002016732 – 362Ribosome-binding ATPase YchFAdd BLAST361

Proteomic databases

PRIDEiQ8K9V2

Interactioni

Protein-protein interaction databases

STRINGi198804.BUsg185

Structurei

3D structure databases

ProteinModelPortaliQ8K9V2
SMRiQ8K9V2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 255OBG-type GAdd BLAST253

Sequence similaritiesi

Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. YchF/OLA1 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105C3G Bacteria
COG0012 LUCA
KOiK06942
OMAiHKDFEKG
OrthoDBiPOG091H01UZ

Family and domain databases

Gene3Di1.10.150.300, 1 hit
3.10.20.30, 2 hits
HAMAPiMF_00944 YchF_OLA1_ATPase, 1 hit
InterProiView protein in InterPro
IPR004396 ATPase_YchF/OLA1
IPR012675 Beta-grasp_dom_sf
IPR031167 G_OBG
IPR006073 GTP_binding_domain
IPR027417 P-loop_NTPase
IPR012676 TGS-like
IPR023192 TGS-like_dom_sf
IPR013029 YchF_C
PfamiView protein in Pfam
PF01926 MMR_HSR1, 1 hit
PF06071 YchF-GTPase_C, 1 hit
PIRSFiPIRSF006641 CHP00092, 1 hit
PRINTSiPR00326 GTP1OBG
SUPFAMiSSF52540 SSF52540, 1 hit
SSF81271 SSF81271, 1 hit
TIGRFAMsiTIGR00092 TIGR00092, 1 hit
PROSITEiView protein in PROSITE
PS51710 G_OBG, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8K9V2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGFKCGIIGL PNVGKSTLFN VLTKGNSAVA NFPFCTIKPN IGIVSVPDNR
60 70 80 90 100
INNLSKIILP KKITNAFIEF VDIAGLVKGA SKGEGLGNQF LSNIRDTHAI
110 120 130 140 150
AHVVRCFKDD NVSHIYNQLQ PKIDVDIINS ELILADFETC EKSILKLQKK
160 170 180 190 200
LNFNKKEIEE KLVVLSKCLD HLKKFLMLKT LELDENEKKI ISYLRFLTLK
210 220 230 240 250
PTMYIANINE QKESCFFLNE LEKMAKKEGS SVIPINSNLE LDLIKMNEDE
260 270 280 290 300
QKYFMKSFNI TNLGLNNIIK SGYKILNLIT FFTAGIKEVR AWAIPNGSTS
310 320 330 340 350
LQAADKIHSD FRRGFIRAQI INYLDFIKYK SETKVKEAGK YRSEGKFYQI
360
QDGDIINFLF NV
Length:362
Mass (Da):41,124
Last modified:January 23, 2007 - v3
Checksum:i8D5C9E45B109F726
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA Translation: AAM67750.1
RefSeqiWP_011053717.1, NC_004061.1

Genome annotation databases

EnsemblBacteriaiAAM67750; AAM67750; BUsg_185
KEGGibas:BUsg_185

Similar proteinsi

Entry informationi

Entry nameiYCHF_BUCAP
AccessioniPrimary (citable) accession number: Q8K9V2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 15, 2002
Last sequence update: January 23, 2007
Last modified: March 28, 2018
This is version 105 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome
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Main funding by: National Institutes of Health