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Q8K9V2

- YCHF_BUCAP

UniProt

Q8K9V2 - YCHF_BUCAP

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Protein
Ribosome-binding ATPase YchF
Gene
ychF, engD, BUsg_185
Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner By similarity.UniRule annotation

Cofactori

Magnesium By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi16 – 161Magnesium By similarity
Metal bindingi36 – 361Magnesium By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi12 – 176ATP By similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. ATPase activity Source: UniProtKB-HAMAP
  3. GTP binding Source: InterPro
  4. metal ion binding Source: UniProtKB-KW
  5. ribosomal large subunit binding Source: UniProtKB-HAMAP
  6. ribosome binding Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Ligandi

ATP-binding, Magnesium, Metal-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciBAPH198804:GHMG-195-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome-binding ATPase YchF
Gene namesi
Name:ychF
Synonyms:engD
Ordered Locus Names:BUsg_185
OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Taxonomic identifieri198804 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
ProteomesiUP000000416: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed By similarity
Chaini2 – 362361Ribosome-binding ATPase YchFUniRule annotation
PRO_0000201673Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi198804.BUsg185.

Structurei

3D structure databases

ProteinModelPortaliQ8K9V2.
SMRiQ8K9V2. Positions 1-362.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 255253OBG-type G
Add
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0012.
KOiK06942.
OMAiIPTTMEF.
OrthoDBiEOG6NSGJC.

Family and domain databases

Gene3Di1.10.150.300. 1 hit.
3.10.20.30. 1 hit.
3.40.50.300. 2 hits.
HAMAPiMF_00944. YchF_OLA1_ATPase.
InterProiIPR004396. ATPase_YchF/OLA1.
IPR012675. Beta-grasp_dom.
IPR013029. DUF933.
IPR006073. GTP_binding_domain.
IPR027417. P-loop_NTPase.
IPR012676. TGS-like.
IPR023192. TGS-like_dom.
[Graphical view]
PfamiPF01926. MMR_HSR1. 1 hit.
PF06071. YchF-GTPase_C. 1 hit.
[Graphical view]
PIRSFiPIRSF006641. CHP00092. 1 hit.
PRINTSiPR00326. GTP1OBG.
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF81271. SSF81271. 1 hit.
TIGRFAMsiTIGR00092. TIGR00092. 1 hit.
PROSITEiPS51710. G_OBG. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8K9V2-1 [UniParc]FASTAAdd to Basket

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MGFKCGIIGL PNVGKSTLFN VLTKGNSAVA NFPFCTIKPN IGIVSVPDNR    50
INNLSKIILP KKITNAFIEF VDIAGLVKGA SKGEGLGNQF LSNIRDTHAI 100
AHVVRCFKDD NVSHIYNQLQ PKIDVDIINS ELILADFETC EKSILKLQKK 150
LNFNKKEIEE KLVVLSKCLD HLKKFLMLKT LELDENEKKI ISYLRFLTLK 200
PTMYIANINE QKESCFFLNE LEKMAKKEGS SVIPINSNLE LDLIKMNEDE 250
QKYFMKSFNI TNLGLNNIIK SGYKILNLIT FFTAGIKEVR AWAIPNGSTS 300
LQAADKIHSD FRRGFIRAQI INYLDFIKYK SETKVKEAGK YRSEGKFYQI 350
QDGDIINFLF NV 362
Length:362
Mass (Da):41,124
Last modified:January 23, 2007 - v3
Checksum:i8D5C9E45B109F726
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE013218 Genomic DNA. Translation: AAM67750.1.
RefSeqiNP_660539.1. NC_004061.1.
WP_011053717.1. NC_004061.1.

Genome annotation databases

EnsemblBacteriaiAAM67750; AAM67750; BUsg_185.
GeneIDi1005382.
KEGGibas:BUsg185.
PATRICi21247153. VBIBucAph100086_0190.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE013218 Genomic DNA. Translation: AAM67750.1 .
RefSeqi NP_660539.1. NC_004061.1.
WP_011053717.1. NC_004061.1.

3D structure databases

ProteinModelPortali Q8K9V2.
SMRi Q8K9V2. Positions 1-362.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 198804.BUsg185.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAM67750 ; AAM67750 ; BUsg_185 .
GeneIDi 1005382.
KEGGi bas:BUsg185.
PATRICi 21247153. VBIBucAph100086_0190.

Phylogenomic databases

eggNOGi COG0012.
KOi K06942.
OMAi IPTTMEF.
OrthoDBi EOG6NSGJC.

Enzyme and pathway databases

BioCyci BAPH198804:GHMG-195-MONOMER.

Family and domain databases

Gene3Di 1.10.150.300. 1 hit.
3.10.20.30. 1 hit.
3.40.50.300. 2 hits.
HAMAPi MF_00944. YchF_OLA1_ATPase.
InterProi IPR004396. ATPase_YchF/OLA1.
IPR012675. Beta-grasp_dom.
IPR013029. DUF933.
IPR006073. GTP_binding_domain.
IPR027417. P-loop_NTPase.
IPR012676. TGS-like.
IPR023192. TGS-like_dom.
[Graphical view ]
Pfami PF01926. MMR_HSR1. 1 hit.
PF06071. YchF-GTPase_C. 1 hit.
[Graphical view ]
PIRSFi PIRSF006641. CHP00092. 1 hit.
PRINTSi PR00326. GTP1OBG.
SUPFAMi SSF52540. SSF52540. 1 hit.
SSF81271. SSF81271. 1 hit.
TIGRFAMsi TIGR00092. TIGR00092. 1 hit.
PROSITEi PS51710. G_OBG. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Sg.

Entry informationi

Entry nameiYCHF_BUCAP
AccessioniPrimary (citable) accession number: Q8K9V2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 15, 2002
Last sequence update: January 23, 2007
Last modified: September 3, 2014
This is version 84 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Buchnera aphidicola (subsp. Schizaphis graminum)
    Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi