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Q8K9R5 (SSRP_BUCAP) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 70. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
SsrA-binding protein
Gene names
Name:smpB
Ordered Locus Names:BUsg_245
OrganismBuchnera aphidicola subsp. Schizaphis graminum (strain Sg) [Complete proteome] [HAMAP]
Taxonomic identifier198804 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera

Protein attributes

Sequence length163 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes By similarity. HAMAP-Rule MF_00023

Subcellular location

Cytoplasm Potential HAMAP-Rule MF_00023.

Sequence similarities

Belongs to the SmpB family.

Ontologies

Keywords
   Cellular componentCytoplasm
   LigandRNA-binding
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 163163SsrA-binding protein HAMAP-Rule MF_00023
PRO_0000102921

Sequences

Sequence LengthMass (Da)Tools
Q8K9R5 [UniParc].

Last modified October 1, 2002. Version 1.
Checksum: 637702F33DF7BA08

FASTA16319,246
        10         20         30         40         50         60 
MSYKKKRCLK SSIICKNKKA YYNYFIEEVF QSGLVLMGWE VKSIRLGQVN IIESYINNDN 

        70         80         90        100        110        120 
LNEMYLYNSI VQPLHTSSNY VSCDSSRKRK LLLHKNEIQY LCNKKNKIGS TLVALSLFWE 

       130        140        150        160 
KSWCKLNFGL AKGKTKIDKR ASEKQNEWKK EKLKILKKVK FQN 

« Hide

References

[1]"50 million years of genomic stasis in endosymbiotic bacteria."
Tamas I., Klasson L., Canbaeck B., Naeslund A.K., Eriksson A.-S., Wernegreen J.J., Sandstroem J.P., Moran N.A., Andersson S.G.E.
Science 296:2376-2379(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Sg.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE013218 Genomic DNA. Translation: AAM67804.1.
RefSeqNP_660593.1. NC_004061.1.

3D structure databases

ProteinModelPortalQ8K9R5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING198804.BUsg245.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAM67804; AAM67804; BUsg_245.
GeneID1005446.
KEGGbas:BUsg245.
PATRIC21247293. VBIBucAph100086_0256.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0691.
KOK03664.
OMAPLKIYIK.
OrthoDBEOG6HXJ9P.

Enzyme and pathway databases

BioCycBAPH198804:GHMG-259-MONOMER.

Family and domain databases

Gene3D2.40.280.10. 1 hit.
HAMAPMF_00023. SmpB.
InterProIPR023620. SmpB.
IPR000037. SsrA-bd_prot.
IPR020081. SsrA-bd_prot_CS.
[Graphical view]
PfamPF01668. SmpB. 1 hit.
[Graphical view]
ProDomPD004488. SmpB. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF74982. SSF74982. 1 hit.
TIGRFAMsTIGR00086. smpB. 1 hit.
PROSITEPS01317. SSRP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSSRP_BUCAP
AccessionPrimary (citable) accession number: Q8K9R5
Entry history
Integrated into UniProtKB/Swiss-Prot: November 8, 2002
Last sequence update: October 1, 2002
Last modified: May 14, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Buchnera aphidicola (subsp. Schizaphis graminum)

Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names