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Q8K9R5

- SSRP_BUCAP

UniProt

Q8K9R5 - SSRP_BUCAP

Protein

SsrA-binding protein

Gene

smpB

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 72 (01 Oct 2014)
      Sequence version 1 (01 Oct 2002)
      Previous versions | rss
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    Functioni

    Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes.UniRule annotation

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW

    Keywords - Ligandi

    RNA-binding

    Enzyme and pathway databases

    BioCyciBAPH198804:GHMG-259-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    SsrA-binding proteinUniRule annotation
    Gene namesi
    Name:smpBUniRule annotation
    Ordered Locus Names:BUsg_245
    OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
    Taxonomic identifieri198804 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000000416: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 163163SsrA-binding proteinPRO_0000102921Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi198804.BUsg245.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8K9R5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the SmpB family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0691.
    KOiK03664.
    OMAiPLKIYIK.
    OrthoDBiEOG6HXJ9P.

    Family and domain databases

    Gene3Di2.40.280.10. 1 hit.
    HAMAPiMF_00023. SmpB.
    InterProiIPR023620. SmpB.
    IPR000037. SsrA-bd_prot.
    IPR020081. SsrA-bd_prot_CS.
    [Graphical view]
    PfamiPF01668. SmpB. 1 hit.
    [Graphical view]
    ProDomiPD004488. SmpB. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF74982. SSF74982. 1 hit.
    TIGRFAMsiTIGR00086. smpB. 1 hit.
    PROSITEiPS01317. SSRP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8K9R5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSYKKKRCLK SSIICKNKKA YYNYFIEEVF QSGLVLMGWE VKSIRLGQVN    50
    IIESYINNDN LNEMYLYNSI VQPLHTSSNY VSCDSSRKRK LLLHKNEIQY 100
    LCNKKNKIGS TLVALSLFWE KSWCKLNFGL AKGKTKIDKR ASEKQNEWKK 150
    EKLKILKKVK FQN 163
    Length:163
    Mass (Da):19,246
    Last modified:October 1, 2002 - v1
    Checksum:i637702F33DF7BA08
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM67804.1.
    RefSeqiNP_660593.1. NC_004061.1.
    WP_011053771.1. NC_004061.1.

    Genome annotation databases

    EnsemblBacteriaiAAM67804; AAM67804; BUsg_245.
    GeneIDi1005446.
    KEGGibas:BUsg245.
    PATRICi21247293. VBIBucAph100086_0256.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM67804.1 .
    RefSeqi NP_660593.1. NC_004061.1.
    WP_011053771.1. NC_004061.1.

    3D structure databases

    ProteinModelPortali Q8K9R5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 198804.BUsg245.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAM67804 ; AAM67804 ; BUsg_245 .
    GeneIDi 1005446.
    KEGGi bas:BUsg245.
    PATRICi 21247293. VBIBucAph100086_0256.

    Phylogenomic databases

    eggNOGi COG0691.
    KOi K03664.
    OMAi PLKIYIK.
    OrthoDBi EOG6HXJ9P.

    Enzyme and pathway databases

    BioCyci BAPH198804:GHMG-259-MONOMER.

    Family and domain databases

    Gene3Di 2.40.280.10. 1 hit.
    HAMAPi MF_00023. SmpB.
    InterProi IPR023620. SmpB.
    IPR000037. SsrA-bd_prot.
    IPR020081. SsrA-bd_prot_CS.
    [Graphical view ]
    Pfami PF01668. SmpB. 1 hit.
    [Graphical view ]
    ProDomi PD004488. SmpB. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF74982. SSF74982. 1 hit.
    TIGRFAMsi TIGR00086. smpB. 1 hit.
    PROSITEi PS01317. SSRP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Sg.

    Entry informationi

    Entry nameiSSRP_BUCAP
    AccessioniPrimary (citable) accession number: Q8K9R5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 8, 2002
    Last sequence update: October 1, 2002
    Last modified: October 1, 2014
    This is version 72 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Buchnera aphidicola (subsp. Schizaphis graminum)
      Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3