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Q8K9J2

- HOLB_BUCAP

UniProt

Q8K9J2 - HOLB_BUCAP

Protein

DNA polymerase III subunit delta'

Gene

holB

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 69 (01 Oct 2014)
      Sequence version 1 (01 Oct 2002)
      Previous versions | rss
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    Functioni

    DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity By similarity.By similarity

    Catalytic activityi

    Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).

    GO - Molecular functioni

    1. DNA binding Source: InterPro
    2. DNA-directed DNA polymerase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    DNA-directed DNA polymerase, Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    DNA replication

    Enzyme and pathway databases

    BioCyciBAPH198804:GHMG-359-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA polymerase III subunit delta' (EC:2.7.7.7)
    Gene namesi
    Name:holB
    Ordered Locus Names:BUsg_342
    OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
    Taxonomic identifieri198804 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000000416: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. DNA polymerase III complex Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 328328DNA polymerase III subunit delta'PRO_0000105511Add
    BLAST

    Interactioni

    Subunit structurei

    DNA polymerase III contains a core (composed of alpha, epsilon and theta chains) that associates with a tau subunit. This core dimerizes to form the POLIII' complex. PolIII' associates with the gamma complex (composed of gamma, delta, delta', psi and chi chains) and with the beta chain to form the complete DNA polymerase III complex By similarity.By similarity

    Protein-protein interaction databases

    STRINGi198804.BUsg342.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8K9J2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0470.
    KOiK02341.
    OMAiCHSCHLM.
    OrthoDBiEOG6W9X5M.

    Family and domain databases

    Gene3Di3.40.50.300. 1 hit.
    InterProiIPR008921. DNA_pol3_clamp-load_cplx_C.
    IPR015199. DNA_pol_III_delta_C.
    IPR027417. P-loop_NTPase.
    [Graphical view]
    PfamiPF09115. DNApol3-delta_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF48019. SSF48019. 1 hit.
    SSF52540. SSF52540. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q8K9J2-1 [UniParc]FASTAAdd to Basket

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    MKWYPWLIKP YKKIIRLHER KKAHHAILIK TQKGMGVFKL VWFISKWLLC    50
    LKPKGTNFCD NCHGCKLMSA NNHPDWHTII NEKNDVFDVD SIRVINEKIF 100
    KRAQQGNNKI IFLPNVHKLT ESAVNALLKI LEEPPEKNWF FLIDYNYLKL 150
    HSTLKSRCFL YRLPLPLEKE SLNWLKNNNK KDNISNLTSL RINQDSPISA 200
    KNFIESDLWD ERKNLYKSLS HSIKDKNLLK ILPVLCKKNT IMKIDWICLL 250
    LFDAVKTNFN ERKKLINCDQ IKLINFFSKK YNNILLNKSI RKWTKCRYIL 300
    SSVSSINSEL LLLEQLLLWE KILCFITP 328
    Length:328
    Mass (Da):38,927
    Last modified:October 1, 2002 - v1
    Checksum:i160BA0FE21BAD08D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM67896.1.
    RefSeqiNP_660685.1. NC_004061.1.
    WP_011053863.1. NC_004061.1.

    Genome annotation databases

    EnsemblBacteriaiAAM67896; AAM67896; BUsg_342.
    GeneIDi1005577.
    KEGGibas:BUsg342.
    PATRICi21247499. VBIBucAph100086_0356.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM67896.1 .
    RefSeqi NP_660685.1. NC_004061.1.
    WP_011053863.1. NC_004061.1.

    3D structure databases

    ProteinModelPortali Q8K9J2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 198804.BUsg342.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAM67896 ; AAM67896 ; BUsg_342 .
    GeneIDi 1005577.
    KEGGi bas:BUsg342.
    PATRICi 21247499. VBIBucAph100086_0356.

    Phylogenomic databases

    eggNOGi COG0470.
    KOi K02341.
    OMAi CHSCHLM.
    OrthoDBi EOG6W9X5M.

    Enzyme and pathway databases

    BioCyci BAPH198804:GHMG-359-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.300. 1 hit.
    InterProi IPR008921. DNA_pol3_clamp-load_cplx_C.
    IPR015199. DNA_pol_III_delta_C.
    IPR027417. P-loop_NTPase.
    [Graphical view ]
    Pfami PF09115. DNApol3-delta_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48019. SSF48019. 1 hit.
    SSF52540. SSF52540. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Sg.

    Entry informationi

    Entry nameiHOLB_BUCAP
    AccessioniPrimary (citable) accession number: Q8K9J2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 8, 2002
    Last sequence update: October 1, 2002
    Last modified: October 1, 2014
    This is version 69 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Buchnera aphidicola (subsp. Schizaphis graminum)
      Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names

    External Data

    Dasty 3