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Q8K9J2

- HOLB_BUCAP

UniProt

Q8K9J2 - HOLB_BUCAP

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Protein

DNA polymerase III subunit delta'

Gene

holB

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity (By similarity).By similarity

Catalytic activityi

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. DNA-directed DNA polymerase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

DNA-directed DNA polymerase, Nucleotidyltransferase, Transferase

Keywords - Biological processi

DNA replication

Enzyme and pathway databases

BioCyciBAPH198804:GHMG-359-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA polymerase III subunit delta' (EC:2.7.7.7)
Gene namesi
Name:holB
Ordered Locus Names:BUsg_342
OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Taxonomic identifieri198804 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
ProteomesiUP000000416: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. DNA polymerase III complex Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 328328DNA polymerase III subunit delta'PRO_0000105511Add
BLAST

Interactioni

Subunit structurei

DNA polymerase III contains a core (composed of alpha, epsilon and theta chains) that associates with a tau subunit. This core dimerizes to form the POLIII' complex. PolIII' associates with the gamma complex (composed of gamma, delta, delta', psi and chi chains) and with the beta chain to form the complete DNA polymerase III complex (By similarity).By similarity

Protein-protein interaction databases

STRINGi198804.BUsg342.

Structurei

3D structure databases

ProteinModelPortaliQ8K9J2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0470.
KOiK02341.
OMAiCHSCHLM.
OrthoDBiEOG6W9X5M.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR008921. DNA_pol3_clamp-load_cplx_C.
IPR015199. DNA_pol_III_delta_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF09115. DNApol3-delta_C. 1 hit.
[Graphical view]
SUPFAMiSSF48019. SSF48019. 1 hit.
SSF52540. SSF52540. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8K9J2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKWYPWLIKP YKKIIRLHER KKAHHAILIK TQKGMGVFKL VWFISKWLLC
60 70 80 90 100
LKPKGTNFCD NCHGCKLMSA NNHPDWHTII NEKNDVFDVD SIRVINEKIF
110 120 130 140 150
KRAQQGNNKI IFLPNVHKLT ESAVNALLKI LEEPPEKNWF FLIDYNYLKL
160 170 180 190 200
HSTLKSRCFL YRLPLPLEKE SLNWLKNNNK KDNISNLTSL RINQDSPISA
210 220 230 240 250
KNFIESDLWD ERKNLYKSLS HSIKDKNLLK ILPVLCKKNT IMKIDWICLL
260 270 280 290 300
LFDAVKTNFN ERKKLINCDQ IKLINFFSKK YNNILLNKSI RKWTKCRYIL
310 320
SSVSSINSEL LLLEQLLLWE KILCFITP
Length:328
Mass (Da):38,927
Last modified:October 1, 2002 - v1
Checksum:i160BA0FE21BAD08D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE013218 Genomic DNA. Translation: AAM67896.1.
RefSeqiNP_660685.1. NC_004061.1.
WP_011053863.1. NC_004061.1.

Genome annotation databases

EnsemblBacteriaiAAM67896; AAM67896; BUsg_342.
GeneIDi1005577.
KEGGibas:BUsg342.
PATRICi21247499. VBIBucAph100086_0356.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE013218 Genomic DNA. Translation: AAM67896.1 .
RefSeqi NP_660685.1. NC_004061.1.
WP_011053863.1. NC_004061.1.

3D structure databases

ProteinModelPortali Q8K9J2.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 198804.BUsg342.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAM67896 ; AAM67896 ; BUsg_342 .
GeneIDi 1005577.
KEGGi bas:BUsg342.
PATRICi 21247499. VBIBucAph100086_0356.

Phylogenomic databases

eggNOGi COG0470.
KOi K02341.
OMAi CHSCHLM.
OrthoDBi EOG6W9X5M.

Enzyme and pathway databases

BioCyci BAPH198804:GHMG-359-MONOMER.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
InterProi IPR008921. DNA_pol3_clamp-load_cplx_C.
IPR015199. DNA_pol_III_delta_C.
IPR027417. P-loop_NTPase.
[Graphical view ]
Pfami PF09115. DNApol3-delta_C. 1 hit.
[Graphical view ]
SUPFAMi SSF48019. SSF48019. 1 hit.
SSF52540. SSF52540. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Sg.

Entry informationi

Entry nameiHOLB_BUCAP
AccessioniPrimary (citable) accession number: Q8K9J2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 8, 2002
Last sequence update: October 1, 2002
Last modified: October 1, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Buchnera aphidicola (subsp. Schizaphis graminum)
    Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names

External Data

Dasty 3