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Q8K9H2 (RBFA_BUCAP) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ribosome-binding factor A
Gene names
Name:rbfA
Ordered Locus Names:BUsg_364
OrganismBuchnera aphidicola subsp. Schizaphis graminum (strain Sg) [Complete proteome] [HAMAP]
Taxonomic identifier198804 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera

Protein attributes

Sequence length124 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA By similarity. HAMAP-Rule MF_00003

Subcellular location

Cytoplasm Potential HAMAP-Rule MF_00003.

Sequence similarities

Belongs to the RbfA family.

Ontologies

Keywords
   Biological processrRNA processing
   Cellular componentCytoplasm
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processrRNA processing

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 124124Ribosome-binding factor A HAMAP-Rule MF_00003
PRO_0000102635

Sequences

Sequence LengthMass (Da)Tools
Q8K9H2 [UniParc].

Last modified October 1, 2002. Version 1.
Checksum: 8ED0A02450BBE696

FASTA12414,440
        10         20         30         40         50         60 
MDKLFNRSFR IAQELQKNIA FIIQHSLKDP RIKTIITVSE VRLSKDLSYA QVFVSFLETN 

        70         80         90        100        110        120 
SNLTVKKVLI LLNRASGYIR KLLCKKMNLR IIPIIVFFHD DSFFKGNKIS KLLNILTEKN 


NITL 

« Hide

References

[1]"50 million years of genomic stasis in endosymbiotic bacteria."
Tamas I., Klasson L., Canbaeck B., Naeslund A.K., Eriksson A.-S., Wernegreen J.J., Sandstroem J.P., Moran N.A., Andersson S.G.E.
Science 296:2376-2379(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Sg.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE013218 Genomic DNA. Translation: AAM67917.1.
RefSeqNP_660706.1. NC_004061.1.

3D structure databases

ProteinModelPortalQ8K9H2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING198804.BUsg364.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAM67917; AAM67917; BUsg_364.
GeneID1005793.
KEGGbas:BUsg364.
PATRIC21247543. VBIBucAph100086_0378.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0858.
KOK02834.
OMAMNLRIIP.
OrthoDBEOG6XQ3TJ.

Enzyme and pathway databases

BioCycBAPH198804:GHMG-381-MONOMER.

Family and domain databases

Gene3D3.30.300.20. 1 hit.
HAMAPMF_00003. RbfA.
InterProIPR015946. KH_dom-like_a/b.
IPR000238. Ribosome-bd_facA.
IPR023799. Ribosome-bd_facA_dom.
IPR020053. Ribosome-bd_factorA_CS.
[Graphical view]
PfamPF02033. RBFA. 1 hit.
[Graphical view]
ProDomPD007327. Rib_bd_factA. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF89919. SSF89919. 1 hit.
TIGRFAMsTIGR00082. rbfA. 1 hit.
PROSITEPS01319. RBFA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRBFA_BUCAP
AccessionPrimary (citable) accession number: Q8K9H2
Entry history
Integrated into UniProtKB/Swiss-Prot: November 8, 2002
Last sequence update: October 1, 2002
Last modified: May 14, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Buchnera aphidicola (subsp. Schizaphis graminum)

Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names