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Q8K9C1

- YBEY_BUCAP

UniProt

Q8K9C1 - YBEY_BUCAP

Protein

Endoribonuclease YbeY

Gene

ybeY

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 76 (01 Oct 2014)
      Sequence version 2 (15 Nov 2002)
      Previous versions | rss
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    Functioni

    Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.UniRule annotation

    Cofactori

    Binds 1 zinc ion.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi117 – 1171Zinc; catalyticUniRule annotation
    Metal bindingi121 – 1211Zinc; catalyticUniRule annotation
    Metal bindingi127 – 1271Zinc; catalyticUniRule annotation

    GO - Molecular functioni

    1. endoribonuclease activity Source: UniProtKB-HAMAP
    2. metalloendopeptidase activity Source: InterPro
    3. zinc ion binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. rRNA processing Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Endonuclease, Hydrolase, Nuclease

    Keywords - Biological processi

    Ribosome biogenesis, rRNA processing

    Keywords - Ligandi

    Metal-binding, Zinc

    Enzyme and pathway databases

    BioCyciBAPH198804:GHMG-450-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Endoribonuclease YbeYUniRule annotation (EC:3.1.-.-UniRule annotation)
    Gene namesi
    Name:ybeYUniRule annotation
    Ordered Locus Names:BUsg_427
    OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
    Taxonomic identifieri198804 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000000416: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 158158Endoribonuclease YbeYPRO_0000102426Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi198804.BUsg427.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8K9C1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the endoribonuclease YbeY family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0319.
    KOiK07042.
    OMAiKPLLAHW.
    OrthoDBiEOG680X6D.

    Family and domain databases

    Gene3Di3.40.390.30. 1 hit.
    HAMAPiMF_00009. Endoribonucl_YbeY.
    InterProiIPR023091. MetalPrtase_cat_dom_prd.
    IPR002036. YbeY.
    IPR020549. YbeY_CS.
    [Graphical view]
    PfamiPF02130. UPF0054. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00043. TIGR00043. 1 hit.
    PROSITEiPS01306. UPF0054. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8K9C1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKKKNNIILT IQKNCKNTKN IPKKYIFEKW IKKVLYKKKN VNLINIRIVD    50
    EREMKNINLK YRGKNKSTNI LSFKFDLFIN KNQTLLGDLV LCKKIIEKES 100
    LKYQKTLESR WAHMIIHGTL HLLGYDHKNK KEKKIMEKIE NKIMLFLNYE 150
    KPYFMKSS 158
    Length:158
    Mass (Da):19,109
    Last modified:November 15, 2002 - v2
    Checksum:i5817EA87E15FB31E
    GO

    Sequence cautioni

    The sequence AAM67970.1 differs from that shown. Reason: Frameshift at position 40.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM67970.1. Frameshift.
    RefSeqiNP_660759.1. NC_004061.1.
    WP_011053937.1. NC_004061.1.

    Genome annotation databases

    EnsemblBacteriaiAAM67970; AAM67970; BUsg_427.
    GeneIDi1005736.
    KEGGibas:BUsg427.
    PATRICi21247704. VBIBucAph100086_0452.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM67970.1 . Frameshift.
    RefSeqi NP_660759.1. NC_004061.1.
    WP_011053937.1. NC_004061.1.

    3D structure databases

    ProteinModelPortali Q8K9C1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 198804.BUsg427.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAM67970 ; AAM67970 ; BUsg_427 .
    GeneIDi 1005736.
    KEGGi bas:BUsg427.
    PATRICi 21247704. VBIBucAph100086_0452.

    Phylogenomic databases

    eggNOGi COG0319.
    KOi K07042.
    OMAi KPLLAHW.
    OrthoDBi EOG680X6D.

    Enzyme and pathway databases

    BioCyci BAPH198804:GHMG-450-MONOMER.

    Family and domain databases

    Gene3Di 3.40.390.30. 1 hit.
    HAMAPi MF_00009. Endoribonucl_YbeY.
    InterProi IPR023091. MetalPrtase_cat_dom_prd.
    IPR002036. YbeY.
    IPR020549. YbeY_CS.
    [Graphical view ]
    Pfami PF02130. UPF0054. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00043. TIGR00043. 1 hit.
    PROSITEi PS01306. UPF0054. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Sg.

    Entry informationi

    Entry nameiYBEY_BUCAP
    AccessioniPrimary (citable) accession number: Q8K9C1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 15, 2002
    Last sequence update: November 15, 2002
    Last modified: October 1, 2014
    This is version 76 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Buchnera aphidicola (subsp. Schizaphis graminum)
      Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3