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Q8K9C1

- YBEY_BUCAP

UniProt

Q8K9C1 - YBEY_BUCAP

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Protein

Endoribonuclease YbeY

Gene

ybeY

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.UniRule annotation

Cofactori

Zn2+UniRule annotationNote: Binds 1 zinc ion.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi117 – 1171Zinc; catalyticUniRule annotation
Metal bindingi121 – 1211Zinc; catalyticUniRule annotation
Metal bindingi127 – 1271Zinc; catalyticUniRule annotation

GO - Molecular functioni

  1. endoribonuclease activity Source: UniProtKB-HAMAP
  2. metalloendopeptidase activity Source: InterPro
  3. zinc ion binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. rRNA processing Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Hydrolase, Nuclease

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciBAPH198804:GHMG-450-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Endoribonuclease YbeYUniRule annotation (EC:3.1.-.-UniRule annotation)
Gene namesi
Name:ybeYUniRule annotation
Ordered Locus Names:BUsg_427
OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Taxonomic identifieri198804 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
ProteomesiUP000000416: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 158158Endoribonuclease YbeYPRO_0000102426Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi198804.BUsg427.

Structurei

3D structure databases

ProteinModelPortaliQ8K9C1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the endoribonuclease YbeY family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0319.
KOiK07042.
OMAiKPLLAHW.
OrthoDBiEOG680X6D.

Family and domain databases

Gene3Di3.40.390.30. 1 hit.
HAMAPiMF_00009. Endoribonucl_YbeY.
InterProiIPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
[Graphical view]
PfamiPF02130. UPF0054. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00043. TIGR00043. 1 hit.
PROSITEiPS01306. UPF0054. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8K9C1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKKKNNIILT IQKNCKNTKN IPKKYIFEKW IKKVLYKKKN VNLINIRIVD
60 70 80 90 100
EREMKNINLK YRGKNKSTNI LSFKFDLFIN KNQTLLGDLV LCKKIIEKES
110 120 130 140 150
LKYQKTLESR WAHMIIHGTL HLLGYDHKNK KEKKIMEKIE NKIMLFLNYE

KPYFMKSS
Length:158
Mass (Da):19,109
Last modified:November 15, 2002 - v2
Checksum:i5817EA87E15FB31E
GO

Sequence cautioni

The sequence AAM67970.1 differs from that shown. Reason: Frameshift at position 40. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA. Translation: AAM67970.1. Frameshift.
RefSeqiNP_660759.1. NC_004061.1.

Genome annotation databases

EnsemblBacteriaiAAM67970; AAM67970; BUsg_427.
GeneIDi1005736.
KEGGibas:BUsg427.
PATRICi21247704. VBIBucAph100086_0452.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA. Translation: AAM67970.1 . Frameshift.
RefSeqi NP_660759.1. NC_004061.1.

3D structure databases

ProteinModelPortali Q8K9C1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 198804.BUsg427.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAM67970 ; AAM67970 ; BUsg_427 .
GeneIDi 1005736.
KEGGi bas:BUsg427.
PATRICi 21247704. VBIBucAph100086_0452.

Phylogenomic databases

eggNOGi COG0319.
KOi K07042.
OMAi KPLLAHW.
OrthoDBi EOG680X6D.

Enzyme and pathway databases

BioCyci BAPH198804:GHMG-450-MONOMER.

Family and domain databases

Gene3Di 3.40.390.30. 1 hit.
HAMAPi MF_00009. Endoribonucl_YbeY.
InterProi IPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
[Graphical view ]
Pfami PF02130. UPF0054. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00043. TIGR00043. 1 hit.
PROSITEi PS01306. UPF0054. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Sg.

Entry informationi

Entry nameiYBEY_BUCAP
AccessioniPrimary (citable) accession number: Q8K9C1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 15, 2002
Last sequence update: November 15, 2002
Last modified: November 26, 2014
This is version 78 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Buchnera aphidicola (subsp. Schizaphis graminum)
    Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3