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Protein

Nucleoid-associated protein BUsg_467

Gene

BUsg_467

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBAPH198804:GHMG-491-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Nucleoid-associated protein BUsg_467UniRule annotation
Gene namesi
Ordered Locus Names:BUsg_467
OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Taxonomic identifieri198804 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
ProteomesiUP000000416 Componenti: Chromosome

Subcellular locationi

  • Cytoplasmnucleoid UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 109109Nucleoid-associated protein BUsg_467PRO_0000170374Add
BLAST

Proteomic databases

PRIDEiQ8K982.

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi198804.BUsg467.

Structurei

3D structure databases

ProteinModelPortaliQ8K982.
SMRiQ8K982. Positions 11-104.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the YbaB/EbfC family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0718.
KOiK09747.
OMAiEMGKLTG.
OrthoDBiEOG6DVJWP.

Family and domain databases

Gene3Di3.30.1310.10. 1 hit.
HAMAPiMF_00274. DNA_YbaB_EbfC.
InterProiIPR004401. YbaB.
[Graphical view]
PfamiPF02575. YbaB_DNA_bd. 1 hit.
[Graphical view]
PIRSFiPIRSF004555. UCP004555. 1 hit.
SUPFAMiSSF82607. SSF82607. 1 hit.
TIGRFAMsiTIGR00103. DNA_YbaB_EbfC. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8K982-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFTKGGLGNL MKQAQQMQEK MAKVQEEIAK MEVTGEAGAG LVKVTINGAH
60 70 80 90 100
NCRRVEVDPS LLKDDKDMLE DLAAAAFNDA TRRISEVQKK KMSAISTGMQ

LPTGFNIPI
Length:109
Mass (Da):11,866
Last modified:October 1, 2002 - v1
Checksum:iAC4174F2EB54A38D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA. Translation: AAM68010.1.
RefSeqiWP_011053977.1. NC_004061.1.

Genome annotation databases

EnsemblBacteriaiAAM68010; AAM68010; BUsg_467.
KEGGibas:BUsg467.
PATRICi21247790. VBIBucAph100086_0494.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA. Translation: AAM68010.1.
RefSeqiWP_011053977.1. NC_004061.1.

3D structure databases

ProteinModelPortaliQ8K982.
SMRiQ8K982. Positions 11-104.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi198804.BUsg467.

Proteomic databases

PRIDEiQ8K982.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM68010; AAM68010; BUsg_467.
KEGGibas:BUsg467.
PATRICi21247790. VBIBucAph100086_0494.

Phylogenomic databases

eggNOGiCOG0718.
KOiK09747.
OMAiEMGKLTG.
OrthoDBiEOG6DVJWP.

Enzyme and pathway databases

BioCyciBAPH198804:GHMG-491-MONOMER.

Family and domain databases

Gene3Di3.30.1310.10. 1 hit.
HAMAPiMF_00274. DNA_YbaB_EbfC.
InterProiIPR004401. YbaB.
[Graphical view]
PfamiPF02575. YbaB_DNA_bd. 1 hit.
[Graphical view]
PIRSFiPIRSF004555. UCP004555. 1 hit.
SUPFAMiSSF82607. SSF82607. 1 hit.
TIGRFAMsiTIGR00103. DNA_YbaB_EbfC. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Sg.

Entry informationi

Entry nameiY467_BUCAP
AccessioniPrimary (citable) accession number: Q8K982
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 8, 2002
Last sequence update: October 1, 2002
Last modified: July 22, 2015
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Buchnera aphidicola (subsp. Schizaphis graminum)
    Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.