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Q8K962

- RL5_BUCAP

UniProt

Q8K962 - RL5_BUCAP

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Protein

50S ribosomal protein L5

Gene

rplE

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciBAPH198804:GHMG-521-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L5UniRule annotation
Gene namesi
Name:rplEUniRule annotation
Ordered Locus Names:BUsg_493
OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Taxonomic identifieri198804 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
ProteomesiUP000000416: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 17917950S ribosomal protein L5PRO_0000124905Add
BLAST

Proteomic databases

PRIDEiQ8K962.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.UniRule annotation

Protein-protein interaction databases

STRINGi198804.BUsg493.

Structurei

3D structure databases

ProteinModelPortaliQ8K962.
SMRiQ8K962. Positions 4-179.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L5P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0094.
KOiK02931.
OMAiNYSSIMQ.
OrthoDBiEOG6M9F1R.

Family and domain databases

Gene3Di3.30.1440.10. 1 hit.
HAMAPiMF_01333_B. Ribosomal_L5_B.
InterProiIPR002132. Ribosomal_L5.
IPR020930. Ribosomal_L5_bac-type.
IPR020929. Ribosomal_L5_CS.
IPR022803. Ribosomal_L5_domain.
[Graphical view]
PANTHERiPTHR11994. PTHR11994. 1 hit.
PfamiPF00281. Ribosomal_L5. 1 hit.
PF00673. Ribosomal_L5_C. 1 hit.
[Graphical view]
PIRSFiPIRSF002161. Ribosomal_L5. 1 hit.
SUPFAMiSSF55282. SSF55282. 1 hit.
PROSITEiPS00358. RIBOSOMAL_L5. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8K962-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTTFYDYYKS KIVKKLMMEL NYSSIMQVPK IDKITLNMGV GAASSDKKVL
60 70 80 90 100
DNAVLDLTAI SGQKPLITKA RKSVAGFKIR QGYPIGCKVT LRGKRKWDFF
110 120 130 140 150
ERLIVIAIPR IRDFRGLSTN SFDGKGNYSL GIREQIIFPE IDYDKIDRVR
160 170
GLDITITTTA NSDHEARLLL SSFNFPFRK
Length:179
Mass (Da):20,396
Last modified:October 1, 2002 - v1
Checksum:iA11A0792594E90F8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA. Translation: AAM68036.1.
RefSeqiNP_660825.1. NC_004061.1.
WP_011054002.1. NC_004061.1.

Genome annotation databases

EnsemblBacteriaiAAM68036; AAM68036; BUsg_493.
GeneIDi1005676.
KEGGibas:BUsg493.
PATRICi21247850. VBIBucAph100086_0520.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA. Translation: AAM68036.1 .
RefSeqi NP_660825.1. NC_004061.1.
WP_011054002.1. NC_004061.1.

3D structure databases

ProteinModelPortali Q8K962.
SMRi Q8K962. Positions 4-179.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 198804.BUsg493.

Proteomic databases

PRIDEi Q8K962.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAM68036 ; AAM68036 ; BUsg_493 .
GeneIDi 1005676.
KEGGi bas:BUsg493.
PATRICi 21247850. VBIBucAph100086_0520.

Phylogenomic databases

eggNOGi COG0094.
KOi K02931.
OMAi NYSSIMQ.
OrthoDBi EOG6M9F1R.

Enzyme and pathway databases

BioCyci BAPH198804:GHMG-521-MONOMER.

Family and domain databases

Gene3Di 3.30.1440.10. 1 hit.
HAMAPi MF_01333_B. Ribosomal_L5_B.
InterProi IPR002132. Ribosomal_L5.
IPR020930. Ribosomal_L5_bac-type.
IPR020929. Ribosomal_L5_CS.
IPR022803. Ribosomal_L5_domain.
[Graphical view ]
PANTHERi PTHR11994. PTHR11994. 1 hit.
Pfami PF00281. Ribosomal_L5. 1 hit.
PF00673. Ribosomal_L5_C. 1 hit.
[Graphical view ]
PIRSFi PIRSF002161. Ribosomal_L5. 1 hit.
SUPFAMi SSF55282. SSF55282. 1 hit.
PROSITEi PS00358. RIBOSOMAL_L5. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Sg.

Entry informationi

Entry nameiRL5_BUCAP
AccessioniPrimary (citable) accession number: Q8K962
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 8, 2002
Last sequence update: October 1, 2002
Last modified: October 29, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Buchnera aphidicola (subsp. Schizaphis graminum)
    Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3