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Q8K962

- RL5_BUCAP

UniProt

Q8K962 - RL5_BUCAP

Protein

50S ribosomal protein L5

Gene

rplE

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 75 (01 Oct 2014)
      Sequence version 1 (01 Oct 2002)
      Previous versions | rss
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    Functioni

    This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro
    3. tRNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding, tRNA-binding

    Enzyme and pathway databases

    BioCyciBAPH198804:GHMG-521-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L5UniRule annotation
    Gene namesi
    Name:rplEUniRule annotation
    Ordered Locus Names:BUsg_493
    OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
    Taxonomic identifieri198804 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000000416: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 17917950S ribosomal protein L5PRO_0000124905Add
    BLAST

    Proteomic databases

    PRIDEiQ8K962.

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.UniRule annotation

    Protein-protein interaction databases

    STRINGi198804.BUsg493.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8K962.
    SMRiQ8K962. Positions 4-179.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L5P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0094.
    KOiK02931.
    OMAiNYSSIMQ.
    OrthoDBiEOG6M9F1R.

    Family and domain databases

    Gene3Di3.30.1440.10. 1 hit.
    HAMAPiMF_01333_B. Ribosomal_L5_B.
    InterProiIPR002132. Ribosomal_L5.
    IPR020930. Ribosomal_L5_bac-type.
    IPR020929. Ribosomal_L5_CS.
    IPR022803. Ribosomal_L5_domain.
    [Graphical view]
    PANTHERiPTHR11994. PTHR11994. 1 hit.
    PfamiPF00281. Ribosomal_L5. 1 hit.
    PF00673. Ribosomal_L5_C. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002161. Ribosomal_L5. 1 hit.
    SUPFAMiSSF55282. SSF55282. 1 hit.
    PROSITEiPS00358. RIBOSOMAL_L5. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8K962-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTTFYDYYKS KIVKKLMMEL NYSSIMQVPK IDKITLNMGV GAASSDKKVL    50
    DNAVLDLTAI SGQKPLITKA RKSVAGFKIR QGYPIGCKVT LRGKRKWDFF 100
    ERLIVIAIPR IRDFRGLSTN SFDGKGNYSL GIREQIIFPE IDYDKIDRVR 150
    GLDITITTTA NSDHEARLLL SSFNFPFRK 179
    Length:179
    Mass (Da):20,396
    Last modified:October 1, 2002 - v1
    Checksum:iA11A0792594E90F8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM68036.1.
    RefSeqiNP_660825.1. NC_004061.1.

    Genome annotation databases

    EnsemblBacteriaiAAM68036; AAM68036; BUsg_493.
    GeneIDi1005676.
    KEGGibas:BUsg493.
    PATRICi21247850. VBIBucAph100086_0520.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM68036.1 .
    RefSeqi NP_660825.1. NC_004061.1.

    3D structure databases

    ProteinModelPortali Q8K962.
    SMRi Q8K962. Positions 4-179.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 198804.BUsg493.

    Proteomic databases

    PRIDEi Q8K962.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAM68036 ; AAM68036 ; BUsg_493 .
    GeneIDi 1005676.
    KEGGi bas:BUsg493.
    PATRICi 21247850. VBIBucAph100086_0520.

    Phylogenomic databases

    eggNOGi COG0094.
    KOi K02931.
    OMAi NYSSIMQ.
    OrthoDBi EOG6M9F1R.

    Enzyme and pathway databases

    BioCyci BAPH198804:GHMG-521-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1440.10. 1 hit.
    HAMAPi MF_01333_B. Ribosomal_L5_B.
    InterProi IPR002132. Ribosomal_L5.
    IPR020930. Ribosomal_L5_bac-type.
    IPR020929. Ribosomal_L5_CS.
    IPR022803. Ribosomal_L5_domain.
    [Graphical view ]
    PANTHERi PTHR11994. PTHR11994. 1 hit.
    Pfami PF00281. Ribosomal_L5. 1 hit.
    PF00673. Ribosomal_L5_C. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002161. Ribosomal_L5. 1 hit.
    SUPFAMi SSF55282. SSF55282. 1 hit.
    PROSITEi PS00358. RIBOSOMAL_L5. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Sg.

    Entry informationi

    Entry nameiRL5_BUCAP
    AccessioniPrimary (citable) accession number: Q8K962
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 8, 2002
    Last sequence update: October 1, 2002
    Last modified: October 1, 2014
    This is version 75 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Buchnera aphidicola (subsp. Schizaphis graminum)
      Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3