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Q8K951

- RL4_BUCAP

UniProt

Q8K951 - RL4_BUCAP

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Protein

50S ribosomal protein L4

Gene

rplD

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.UniRule annotation
Forms part of the polypeptide exit tunnel.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciBAPH198804:GHMG-532-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L4UniRule annotation
Gene namesi
Name:rplDUniRule annotation
Ordered Locus Names:BUsg_504
OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Taxonomic identifieri198804 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
ProteomesiUP000000416: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 20120150S ribosomal protein L4PRO_0000129196Add
BLAST

Proteomic databases

PRIDEiQ8K951.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi198804.BUsg504.

Structurei

3D structure databases

ProteinModelPortaliQ8K951.
SMRiQ8K951. Positions 1-201.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L4P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0088.
KOiK02926.
OMAiFDEYLYL.
OrthoDBiEOG6M0T9G.

Family and domain databases

Gene3Di3.40.1370.10. 1 hit.
HAMAPiMF_01328_B. Ribosomal_L4_B.
InterProiIPR002136. Ribosomal_L4/L1e.
IPR013005. Ribosomal_L4/L1e_bac-type.
IPR023574. Ribosomal_L4_dom.
[Graphical view]
PANTHERiPTHR10746. PTHR10746. 1 hit.
PfamiPF00573. Ribosomal_L4. 1 hit.
[Graphical view]
SUPFAMiSSF52166. SSF52166. 1 hit.
TIGRFAMsiTIGR03953. rplD_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8K951-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MELVIKDVPS LLSVSEIIFG RDFNEALIHQ VVVAYSASTR QGTRAQKSRA
60 70 80 90 100
DVSGSGRKPW RQKGTGRARA GSFRSPIWRS GGVTFASKPQ SHSQKINKKM
110 120 130 140 150
YRGALKSIFS ELIRQKRLII FEKFSLDLPK TNLLVKKLKE IKLNNVLILT
160 170 180 190 200
KEIENNLFLA SRNLYSVDVK DVCSMDPVSL IAFEHIIITV AALKKVEEML

S
Length:201
Mass (Da):22,617
Last modified:October 1, 2002 - v1
Checksum:iB5A983AC2C7B1603
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA. Translation: AAM68047.1.
RefSeqiNP_660836.1. NC_004061.1.

Genome annotation databases

EnsemblBacteriaiAAM68047; AAM68047; BUsg_504.
GeneIDi1005541.
KEGGibas:BUsg504.
PATRICi21247872. VBIBucAph100086_0531.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013218 Genomic DNA. Translation: AAM68047.1 .
RefSeqi NP_660836.1. NC_004061.1.

3D structure databases

ProteinModelPortali Q8K951.
SMRi Q8K951. Positions 1-201.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 198804.BUsg504.

Proteomic databases

PRIDEi Q8K951.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAM68047 ; AAM68047 ; BUsg_504 .
GeneIDi 1005541.
KEGGi bas:BUsg504.
PATRICi 21247872. VBIBucAph100086_0531.

Phylogenomic databases

eggNOGi COG0088.
KOi K02926.
OMAi FDEYLYL.
OrthoDBi EOG6M0T9G.

Enzyme and pathway databases

BioCyci BAPH198804:GHMG-532-MONOMER.

Family and domain databases

Gene3Di 3.40.1370.10. 1 hit.
HAMAPi MF_01328_B. Ribosomal_L4_B.
InterProi IPR002136. Ribosomal_L4/L1e.
IPR013005. Ribosomal_L4/L1e_bac-type.
IPR023574. Ribosomal_L4_dom.
[Graphical view ]
PANTHERi PTHR10746. PTHR10746. 1 hit.
Pfami PF00573. Ribosomal_L4. 1 hit.
[Graphical view ]
SUPFAMi SSF52166. SSF52166. 1 hit.
TIGRFAMsi TIGR03953. rplD_bact. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Sg.

Entry informationi

Entry nameiRL4_BUCAP
AccessioniPrimary (citable) accession number: Q8K951
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 8, 2002
Last sequence update: October 1, 2002
Last modified: October 1, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Buchnera aphidicola (subsp. Schizaphis graminum)
    Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3