Q8K951 (RL4_BUCAP) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L4

Gene names

Name:	rplD
Ordered Locus Names:	BUsg_504

Organism

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) [Complete proteome] [HAMAP]

Taxonomic identifier

198804 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Buchnera › Buchnera aphidicola › Buchnera aphidicola (Schizaphis graminum)

Protein attributes

Sequence length	201 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome By similarity. HAMAP-Rule MF_01328 Forms part of the polypeptide exit tunnel By similarity. HAMAP-Rule MF_01328
Subunit structure	Part of the 50S ribosomal subunit By similarity.
Sequence similarities	Belongs to the ribosomal protein L4P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 201	201	50S ribosomal protein L4 HAMAP-Rule MF_01328		PRO_0000129196

Sequences

	Sequence		Length	Mass (Da)
	Q8K951 [UniParc]. Last modified October 1, 2002. Version 1. Checksum: B5A983AC2C7B1603	FASTA	201	22,617
	10 20 30 40 50 60 MELVIKDVPS LLSVSEIIFG RDFNEALIHQ VVVAYSASTR QGTRAQKSRA DVSGSGRKPW 70 80 90 100 110 120 RQKGTGRARA GSFRSPIWRS GGVTFASKPQ SHSQKINKKM YRGALKSIFS ELIRQKRLII 130 140 150 160 170 180 FEKFSLDLPK TNLLVKKLKE IKLNNVLILT KEIENNLFLA SRNLYSVDVK DVCSMDPVSL 190 200 IAFEHIIITV AALKKVEEML S

References

[1]

"50 million years of genomic stasis in endosymbiotic bacteria." Tamas I., Klasson L., Canbaeck B., Naeslund A.K., Eriksson A.-S., Wernegreen J.J., Sandstroem J.P., Moran N.A., Andersson S.G.E. Science 296:2376-2379(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Sg.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE013218 Genomic DNA. Translation: AAM68047.1.
RefSeq	NP_660836.1. NC_004061.1.
3D structure databases
ProteinModelPortal	Q8K951.
SMR	Q8K951. Positions 1-201.
ModBase	Search...
Protein-protein interaction databases
STRING	198804.BUsg504.
Proteomic databases
PRIDE	Q8K951.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAM68047; AAM68047; BUsg_504.
GeneID	1005541.
KEGG	bas:BUsg504.
PATRIC	21247872. VBIBucAph100086_0531.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0088.
KO	K02926.
OMA	AHNIVIS.
ProtClustDB	PRK05319.
Enzyme and pathway databases
BioCyc	BAPH198804:GHMG-549-MONOMER.
Family and domain databases
Gene3D	3.40.1370.10. 1 hit.
HAMAP	MF_01328_B. Ribosomal_L4_B.
InterPro	IPR002136. Ribosomal_L4/L1e. IPR013005. Ribosomal_L4/L1e_bac-type. IPR023574. Ribosomal_L4_dom. [Graphical view]
PANTHER	PTHR10746. PTHR10746. 1 hit.
Pfam	PF00573. Ribosomal_L4. 1 hit. [Graphical view]
SUPFAM	SSF52166. Ribosomal_L4/L1E. 1 hit.
TIGRFAMs	TIGR03953. rplD_bact. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RL4_BUCAP

Accession

Primary (citable) accession number: Q8K951

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 8, 2002
Last sequence update:	October 1, 2002
Last modified:	May 1, 2013
This is version 64 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program