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Q8K951 (RL4_BUCAP) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L4
Gene names
Name:rplD
Ordered Locus Names:BUsg_504
OrganismBuchnera aphidicola subsp. Schizaphis graminum (strain Sg) [Complete proteome] [HAMAP]
Taxonomic identifier198804 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera

Protein attributes

Sequence length201 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome By similarity. HAMAP-Rule MF_01328

Forms part of the polypeptide exit tunnel By similarity. HAMAP-Rule MF_01328

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01328

Sequence similarities

Belongs to the ribosomal protein L4P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 20120150S ribosomal protein L4 HAMAP-Rule MF_01328
PRO_0000129196

Sequences

Sequence LengthMass (Da)Tools
Q8K951 [UniParc].

Last modified October 1, 2002. Version 1.
Checksum: B5A983AC2C7B1603

FASTA20122,617
        10         20         30         40         50         60 
MELVIKDVPS LLSVSEIIFG RDFNEALIHQ VVVAYSASTR QGTRAQKSRA DVSGSGRKPW 

        70         80         90        100        110        120 
RQKGTGRARA GSFRSPIWRS GGVTFASKPQ SHSQKINKKM YRGALKSIFS ELIRQKRLII 

       130        140        150        160        170        180 
FEKFSLDLPK TNLLVKKLKE IKLNNVLILT KEIENNLFLA SRNLYSVDVK DVCSMDPVSL 

       190        200 
IAFEHIIITV AALKKVEEML S 

« Hide

References

[1]"50 million years of genomic stasis in endosymbiotic bacteria."
Tamas I., Klasson L., Canbaeck B., Naeslund A.K., Eriksson A.-S., Wernegreen J.J., Sandstroem J.P., Moran N.A., Andersson S.G.E.
Science 296:2376-2379(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Sg.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE013218 Genomic DNA. Translation: AAM68047.1.
RefSeqNP_660836.1. NC_004061.1.

3D structure databases

ProteinModelPortalQ8K951.
SMRQ8K951. Positions 1-201.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING198804.BUsg504.

Proteomic databases

PRIDEQ8K951.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAM68047; AAM68047; BUsg_504.
GeneID1005541.
KEGGbas:BUsg504.
PATRIC21247872. VBIBucAph100086_0531.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0088.
KOK02926.
OMAFDEYLYL.
OrthoDBEOG6M0T9G.

Enzyme and pathway databases

BioCycBAPH198804:GHMG-532-MONOMER.

Family and domain databases

Gene3D3.40.1370.10. 1 hit.
HAMAPMF_01328_B. Ribosomal_L4_B.
InterProIPR002136. Ribosomal_L4/L1e.
IPR013005. Ribosomal_L4/L1e_bac-type.
IPR023574. Ribosomal_L4_dom.
[Graphical view]
PANTHERPTHR10746. PTHR10746. 1 hit.
PfamPF00573. Ribosomal_L4. 1 hit.
[Graphical view]
SUPFAMSSF52166. SSF52166. 1 hit.
TIGRFAMsTIGR03953. rplD_bact. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRL4_BUCAP
AccessionPrimary (citable) accession number: Q8K951
Entry history
Integrated into UniProtKB/Swiss-Prot: November 8, 2002
Last sequence update: October 1, 2002
Last modified: May 14, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

Buchnera aphidicola (subsp. Schizaphis graminum)

Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names