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Q8K951

- RL4_BUCAP

UniProt

Q8K951 - RL4_BUCAP

Protein

50S ribosomal protein L4

Gene

rplD

Organism
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 70 (01 Oct 2014)
      Sequence version 1 (01 Oct 2002)
      Previous versions | rss
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    Functioni

    One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.UniRule annotation
    Forms part of the polypeptide exit tunnel.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciBAPH198804:GHMG-532-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L4UniRule annotation
    Gene namesi
    Name:rplDUniRule annotation
    Ordered Locus Names:BUsg_504
    OrganismiBuchnera aphidicola subsp. Schizaphis graminum (strain Sg)
    Taxonomic identifieri198804 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000000416: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 20120150S ribosomal protein L4PRO_0000129196Add
    BLAST

    Proteomic databases

    PRIDEiQ8K951.

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    STRINGi198804.BUsg504.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8K951.
    SMRiQ8K951. Positions 1-201.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L4P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0088.
    KOiK02926.
    OMAiFDEYLYL.
    OrthoDBiEOG6M0T9G.

    Family and domain databases

    Gene3Di3.40.1370.10. 1 hit.
    HAMAPiMF_01328_B. Ribosomal_L4_B.
    InterProiIPR002136. Ribosomal_L4/L1e.
    IPR013005. Ribosomal_L4/L1e_bac-type.
    IPR023574. Ribosomal_L4_dom.
    [Graphical view]
    PANTHERiPTHR10746. PTHR10746. 1 hit.
    PfamiPF00573. Ribosomal_L4. 1 hit.
    [Graphical view]
    SUPFAMiSSF52166. SSF52166. 1 hit.
    TIGRFAMsiTIGR03953. rplD_bact. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q8K951-1 [UniParc]FASTAAdd to Basket

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    MELVIKDVPS LLSVSEIIFG RDFNEALIHQ VVVAYSASTR QGTRAQKSRA    50
    DVSGSGRKPW RQKGTGRARA GSFRSPIWRS GGVTFASKPQ SHSQKINKKM 100
    YRGALKSIFS ELIRQKRLII FEKFSLDLPK TNLLVKKLKE IKLNNVLILT 150
    KEIENNLFLA SRNLYSVDVK DVCSMDPVSL IAFEHIIITV AALKKVEEML 200
    S 201
    Length:201
    Mass (Da):22,617
    Last modified:October 1, 2002 - v1
    Checksum:iB5A983AC2C7B1603
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM68047.1.
    RefSeqiNP_660836.1. NC_004061.1.

    Genome annotation databases

    EnsemblBacteriaiAAM68047; AAM68047; BUsg_504.
    GeneIDi1005541.
    KEGGibas:BUsg504.
    PATRICi21247872. VBIBucAph100086_0531.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013218 Genomic DNA. Translation: AAM68047.1 .
    RefSeqi NP_660836.1. NC_004061.1.

    3D structure databases

    ProteinModelPortali Q8K951.
    SMRi Q8K951. Positions 1-201.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 198804.BUsg504.

    Proteomic databases

    PRIDEi Q8K951.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAM68047 ; AAM68047 ; BUsg_504 .
    GeneIDi 1005541.
    KEGGi bas:BUsg504.
    PATRICi 21247872. VBIBucAph100086_0531.

    Phylogenomic databases

    eggNOGi COG0088.
    KOi K02926.
    OMAi FDEYLYL.
    OrthoDBi EOG6M0T9G.

    Enzyme and pathway databases

    BioCyci BAPH198804:GHMG-532-MONOMER.

    Family and domain databases

    Gene3Di 3.40.1370.10. 1 hit.
    HAMAPi MF_01328_B. Ribosomal_L4_B.
    InterProi IPR002136. Ribosomal_L4/L1e.
    IPR013005. Ribosomal_L4/L1e_bac-type.
    IPR023574. Ribosomal_L4_dom.
    [Graphical view ]
    PANTHERi PTHR10746. PTHR10746. 1 hit.
    Pfami PF00573. Ribosomal_L4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52166. SSF52166. 1 hit.
    TIGRFAMsi TIGR03953. rplD_bact. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Sg.

    Entry informationi

    Entry nameiRL4_BUCAP
    AccessioniPrimary (citable) accession number: Q8K951
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 8, 2002
    Last sequence update: October 1, 2002
    Last modified: October 1, 2014
    This is version 70 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Buchnera aphidicola (subsp. Schizaphis graminum)
      Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3