ID SF3A1_MOUSE Reviewed; 791 AA. AC Q8K4Z5; Q8C0M7; Q8C128; Q8C175; Q921T3; DT 05-JUL-2005, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-2002, sequence version 1. DT 27-MAR-2024, entry version 176. DE RecName: Full=Splicing factor 3A subunit 1; DE AltName: Full=SF3a120; GN Name=Sf3a1; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. OX NCBI_TaxID=10090; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=C57BL/6J; TISSUE=Skin, and Testis; RX PubMed=16141072; DOI=10.1126/science.1112014; RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J., RA Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., RA Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., RA Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., RA Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., RA Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., RA Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., RA Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., RA Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., RA Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., RA Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., RA Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., RA Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., RA Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., RA Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., RA Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., RA Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., RA Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., RA Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., RA Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., RA van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., RA Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., RA Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., RA Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., RA Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., RA Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., RA Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., RA Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., RA Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.; RT "The transcriptional landscape of the mammalian genome."; RL Science 309:1559-1563(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=C57BL/6J; RX PubMed=19468303; DOI=10.1371/journal.pbio.1000112; RA Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., RA Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., RA Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S., RA Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., RA Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., RA Eichler E.E., Ponting C.P.; RT "Lineage-specific biology revealed by a finished genome assembly of the RT mouse."; RL PLoS Biol. 7:E1000112-E1000112(2009). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=Czech II; TISSUE=Mammary gland, and Mammary tumor; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [4] RP PROTEIN SEQUENCE OF 238-246; 471-484 AND 755-763, AND IDENTIFICATION BY RP MASS SPECTROMETRY. RC STRAIN=OF1; TISSUE=Hippocampus; RA Lubec G., Sunyer B., Chen W.-Q.; RL Submitted (JAN-2009) to UniProtKB. RN [5] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Brain, Brown adipose tissue, Heart, Kidney, Liver, Lung, RC Pancreas, Spleen, and Testis; RX PubMed=21183079; DOI=10.1016/j.cell.2010.12.001; RA Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., RA Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.; RT "A tissue-specific atlas of mouse protein phosphorylation and expression."; RL Cell 143:1174-1189(2010). RN [6] RP ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-55, AND IDENTIFICATION BY MASS RP SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Embryonic fibroblast; RX PubMed=23806337; DOI=10.1016/j.molcel.2013.06.001; RA Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y., RA Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.; RT "SIRT5-mediated lysine desuccinylation impacts diverse metabolic RT pathways."; RL Mol. Cell 50:919-930(2013). RN [7] RP STRUCTURE BY NMR OF 685-786. RG RIKEN structural genomics initiative (RSGI); RT "Solution structure of ubiquitin-like domain in Sf3a120."; RL Submitted (NOV-2004) to the PDB data bank. CC -!- FUNCTION: Component of the 17S U2 SnRNP complex of the spliceosome, a CC large ribonucleoprotein complex that removes introns from transcribed CC pre-mRNAs. The 17S U2 SnRNP complex (1) directly participates in early CC spliceosome assembly and (2) mediates recognition of the intron branch CC site during pre-mRNA splicing by promoting the selection of the pre- CC mRNA branch-site adenosine, the nucleophile for the first step of CC splicing. Within the 17S U2 SnRNP complex, SF3A1 is part of the SF3A CC subcomplex that contributes to the assembly of the 17S U2 snRNP, and CC the subsequent assembly of the pre-spliceosome 'E' complex and the pre- CC catalytic spliceosome 'A' complex. Involved in pre-mRNA splicing as a CC component of pre-catalytic spliceosome 'B' complexes. CC {ECO:0000250|UniProtKB:Q15459}. CC -!- SUBUNIT: Component of the 17S U2 SnRNP complex, a ribonucleoprotein CC complex that contains small nuclear RNA (snRNA) U2 and a number of CC specific proteins. Part of the SF3A subcomplex of the 17S U2 SnRNP CC complex which is composed of three subunits; SF3A3/SAP61, SF3A2/SAP62 CC and SF3A1/SAP114. SF3A associates with the splicing factor SF3B and a CC 12S RNA unit to form the mature 17S U2 small nuclear ribonucleoprotein CC complex (17S U2 snRNP). SF3A1 functions as a scaffold that interacts CC directly with both SF3A2 and SF3A3. Identified in the spliceosome 'E' CC complex, a precursor of the spliceosome 'A' complex. Identified in the CC spliceosome 'A' and 'B' complexes. Identified in the spliceosome 'C' CC complex. {ECO:0000250|UniProtKB:Q15459}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q15459}. Nucleus CC speckle {ECO:0000250|UniProtKB:Q15459}. CC -!- DOMAIN: SURP motif 2 mediates direct binding to SF3A3. {ECO:0000250}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AK028829; BAC26142.1; -; mRNA. DR EMBL; AK029095; BAC26294.1; -; mRNA. DR EMBL; AK030223; BAC26853.1; -; mRNA. DR EMBL; AL807825; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; BC010727; AAH10727.1; -; mRNA. DR EMBL; BC029753; AAH29753.1; -; mRNA. DR CCDS; CCDS24380.1; -. DR RefSeq; NP_080451.4; NM_026175.5. DR PDB; 1WE7; NMR; -; A=685-786. DR PDBsum; 1WE7; -. DR AlphaFoldDB; Q8K4Z5; -. DR BMRB; Q8K4Z5; -. DR SMR; Q8K4Z5; -. DR BioGRID; 212207; 66. DR IntAct; Q8K4Z5; 38. DR MINT; Q8K4Z5; -. DR STRING; 10090.ENSMUSP00000002198; -. DR iPTMnet; Q8K4Z5; -. DR PhosphoSitePlus; Q8K4Z5; -. DR SwissPalm; Q8K4Z5; -. DR EPD; Q8K4Z5; -. DR jPOST; Q8K4Z5; -. DR MaxQB; Q8K4Z5; -. DR PaxDb; 10090-ENSMUSP00000002198; -. DR PeptideAtlas; Q8K4Z5; -. DR ProteomicsDB; 261504; -. DR Pumba; Q8K4Z5; -. DR Antibodypedia; 254; 354 antibodies from 27 providers. DR DNASU; 67465; -. DR Ensembl; ENSMUST00000002198.4; ENSMUSP00000002198.4; ENSMUSG00000002129.12. DR GeneID; 67465; -. DR KEGG; mmu:67465; -. DR UCSC; uc007hup.2; mouse. DR AGR; MGI:1914715; -. DR CTD; 10291; -. DR MGI; MGI:1914715; Sf3a1. DR VEuPathDB; HostDB:ENSMUSG00000002129; -. DR eggNOG; KOG0007; Eukaryota. DR GeneTree; ENSGT00730000111077; -. DR HOGENOM; CLU_013259_1_0_1; -. DR InParanoid; Q8K4Z5; -. DR OMA; HAYYRHR; -. DR OrthoDB; 168687at2759; -. DR PhylomeDB; Q8K4Z5; -. DR TreeFam; TF105705; -. DR Reactome; R-MMU-72163; mRNA Splicing - Major Pathway. DR BioGRID-ORCS; 67465; 28 hits in 80 CRISPR screens. DR ChiTaRS; Sf3a1; mouse. DR EvolutionaryTrace; Q8K4Z5; -. DR PRO; PR:Q8K4Z5; -. DR Proteomes; UP000000589; Chromosome 11. DR RNAct; Q8K4Z5; Protein. DR Bgee; ENSMUSG00000002129; Expressed in epiblast (generic) and 272 other cell types or tissues. DR GO; GO:0071013; C:catalytic step 2 spliceosome; ISO:MGI. DR GO; GO:0016607; C:nuclear speck; ISS:UniProtKB. DR GO; GO:0005654; C:nucleoplasm; ISO:MGI. DR GO; GO:0005634; C:nucleus; ISS:UniProtKB. DR GO; GO:0005681; C:spliceosomal complex; ISO:MGI. DR GO; GO:0005686; C:U2 snRNP; ISS:UniProtKB. DR GO; GO:0071005; C:U2-type precatalytic spliceosome; ISS:UniProtKB. DR GO; GO:0071004; C:U2-type prespliceosome; ISS:UniProtKB. DR GO; GO:0005684; C:U2-type spliceosomal complex; ISS:UniProtKB. DR GO; GO:0003723; F:RNA binding; ISS:UniProtKB. DR GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:InterPro. DR GO; GO:0006397; P:mRNA processing; ISO:MGI. DR GO; GO:0000398; P:mRNA splicing, via spliceosome; ISS:UniProtKB. DR GO; GO:1903241; P:U2-type prespliceosome assembly; ISS:UniProtKB. DR CDD; cd01800; Ubl_SF3a120; 1. DR Gene3D; 1.10.10.790; Surp module; 2. DR InterPro; IPR045146; SF3A1. DR InterPro; IPR022030; SF3A1_dom. DR InterPro; IPR035563; SF3As1_ubi. DR InterPro; IPR000061; Surp. DR InterPro; IPR035967; SWAP/Surp_sf. DR InterPro; IPR000626; Ubiquitin-like_dom. DR InterPro; IPR029071; Ubiquitin-like_domsf. DR PANTHER; PTHR15316; SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED; 1. DR PANTHER; PTHR15316:SF1; SPLICING FACTOR 3A SUBUNIT 1; 1. DR Pfam; PF12230; PRP21_like_P; 1. DR Pfam; PF01805; Surp; 2. DR Pfam; PF00240; ubiquitin; 1. DR SMART; SM00648; SWAP; 2. DR SMART; SM00213; UBQ; 1. DR SUPFAM; SSF109905; Surp module (SWAP domain); 2. DR SUPFAM; SSF54236; Ubiquitin-like; 1. DR PROSITE; PS50128; SURP; 2. DR PROSITE; PS50053; UBIQUITIN_2; 1. DR Genevisible; Q8K4Z5; MM. PE 1: Evidence at protein level; KW 3D-structure; Acetylation; Direct protein sequencing; Isopeptide bond; KW mRNA processing; mRNA splicing; Nucleus; Phosphoprotein; KW Reference proteome; Repeat; Spliceosome; Ubl conjugation. FT CHAIN 1..791 FT /note="Splicing factor 3A subunit 1" FT /id="PRO_0000114918" FT REPEAT 52..94 FT /note="SURP motif 1" FT REPEAT 166..208 FT /note="SURP motif 2" FT DOMAIN 705..788 FT /note="Ubiquitin-like" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00214" FT REGION 1..41 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 318..411 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 486..516 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 528..582 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 664..684 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 678..700 FT /note="Required and sufficient for nuclear import" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT COMPBIAS 1..18 FT /note="Pro residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 321..338 FT /note="Acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 367..383 FT /note="Pro residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 486..502 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 529..545 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 549..582 FT /note="Pro residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT SITE 169 FT /note="Critical for binding to SF3A3" FT /evidence="ECO:0000250" FT MOD_RES 55 FT /note="N6-acetyllysine" FT /evidence="ECO:0007744|PubMed:23806337" FT MOD_RES 320 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT MOD_RES 329 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT MOD_RES 357 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT MOD_RES 411 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT MOD_RES 449 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT MOD_RES 454 FT /note="Phosphotyrosine" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT MOD_RES 506 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT MOD_RES 757 FT /note="Phosphotyrosine" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT CROSSLNK 20 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT CROSSLNK 131 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT CROSSLNK 422 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT CROSSLNK 497 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT CROSSLNK 540 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT CROSSLNK 684 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2)" FT /evidence="ECO:0000250|UniProtKB:Q15459" FT CONFLICT 257 FT /note="R -> G (in Ref. 1; BAC26142)" FT /evidence="ECO:0000305" FT CONFLICT 368 FT /note="P -> L (in Ref. 1; BAC26294)" FT /evidence="ECO:0000305" FT CONFLICT 708 FT /note="Q -> L (in Ref. 1; BAC26853)" FT /evidence="ECO:0000305" FT HELIX 685..687 FT /evidence="ECO:0007829|PDB:1WE7" FT HELIX 692..698 FT /evidence="ECO:0007829|PDB:1WE7" FT STRAND 703..709 FT /evidence="ECO:0007829|PDB:1WE7" FT STRAND 713..715 FT /evidence="ECO:0007829|PDB:1WE7" FT STRAND 721..729 FT /evidence="ECO:0007829|PDB:1WE7" FT HELIX 736..745 FT /evidence="ECO:0007829|PDB:1WE7" FT TURN 750..752 FT /evidence="ECO:0007829|PDB:1WE7" FT STRAND 753..757 FT /evidence="ECO:0007829|PDB:1WE7" FT STRAND 760..762 FT /evidence="ECO:0007829|PDB:1WE7" FT HELIX 768..771 FT /evidence="ECO:0007829|PDB:1WE7" FT STRAND 778..783 FT /evidence="ECO:0007829|PDB:1WE7" SQ SEQUENCE 791 AA; 88545 MW; D83D0432469C3708 CRC64; MQAGPVQAVP PPPPVATESK QPIEEEASSK EDPTPSKPVV GIIYPPPEVR NIVDKTASFV ARNGPEFEAR IRQNEINNPK FNFLNPNDPY HAYYRHKVSE FKEGKAQEPS AAIPKVMQQQ QQATQQQLPQ KVQAQVIQET IVPKEPPPEF EFIADPPSIS AFDLDVVKLT AQFVARNGRQ FLTQLMQKEQ RNYQFDFLRP QHSLFNYFTK LVEQYTKILI PPKGLFSKLK KEAENPREVL DQVCYRVEWA KFQERERKKE EEEKEKERVA YAQIDWHDFV VVETVDFQPN EQGNFPPPTT PEELGARILI QERYEKFGES EEVEMEVESD EEDQEKAEET PSQLDQDTQV QDMDEGSDDE EEGQKVPPPP ETPMPPPLPP TPDQVIVRKD YDPKASKPLP PAPAPDEYLV SPITGEKIPA SKMQEHMRIG LLDPRWLEQR DRSIREKQSD DEVYAPGLDI ESSLKQLAER RTDIFGVEET AIGKKIGEEE IQKPEEKVTW DGHSGSMART QQAAQANITL QEQIEAIHKA KGLVPEDDTK EKIGPSKPNE IPQQPPPPSS ATNIPSSAPP ITSVPRPPAM PPPVRTTVVS AVPVMPRPPM ASVVRLPPGS VIAPMPPIIH APRINVVPMP PAAPPIMAPR PPPMIVPTAF VPAPPVAPVP APAPMPPVHP PPPMEDEPPS KKLKTEDSLM PEEEFLRRNK GPVSIKVQVP NMQDKTEWKL NGQGLVFTLP LTDQVSVIKV KIHEATGMPA GKQKLQYEGI FIKDSNSLAY YNMASGAVIH LALKERGGRK K //