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Q8K220 (Q8K220_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 79. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Transcription factor RelB Ensembl ENSMUSP00000050166
Gene names
Name:Relb EMBL AAH34523.1 MGI 103289 Ensembl ENSMUSP00000050166
OrganismMus musculus (Mouse) [Reference proteome] EMBL AAH34523.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length555 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 RHD (Rel-like) domain. RuleBase RU003997

Sequences

Sequence LengthMass (Da)Tools
Q8K220 [UniParc].

Last modified October 1, 2002. Version 1.
Checksum: 12642B8A5B9E099A

FASTA55559,948
        10         20         30         40         50         60 
MPSRRAARES APELGALGSS DLSSLSLTVS RTTEIIDEYI KENGFGLDGT QLSEMPRLVP 

        70         80         90        100        110        120 
RGPASLSSVT LGPAAPPPPA TPSWSCTLGR LVSPGPCPRP YLVITEQPKQ RGMRFRYECE 

       130        140        150        160        170        180 
GRSAGSILGE SSTEASKTLP AIELRDCGGL REVEVTACLV WKDWPHRVHP HSLVGKDCTD 

       190        200        210        220        230        240 
GVCRVRLRPH VSPRHSFNNL GIQCVRKKEI EAAIERKIQL GIDPYNAGSL KNHQEVDMNV 

       250        260        270        280        290        300 
VRICFQASYR DQQGHLHRMD PILSEPVYDK KSTNTSELRI CRINKESGPC TGGEELYLLC 

       310        320        330        340        350        360 
DKVQKEDISV VFSTASWEGR ADFSQADVHR QIAIVFKTPP YEDLEISEPV TVNVFLQRLT 

       370        380        390        400        410        420 
DGVCSEPLPF TYLPRDHDSY GVDKKRKRGL PDVLGELSSS DPHGIESKRR KKKPVFLDHF 

       430        440        450        460        470        480 
LPGHSSGLFL PPSALQPADS DFFPASISLP GLEPPGGPDL LDDGFAYDPS APTLFTMLDL 

       490        500        510        520        530        540 
LPPAPPLASA VVGSGGAGAT VVESSGPEPL SLDSFAAPGP GDVGTASLVG SNMFPNQYRE 

       550 
AAFGGGLLSP GPEAT 

« Hide

References

« Hide 'large scale' references
[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N EMBL AAH34523.1.
Tissue: Mammary tumor. Metallothionien-TGF alpha model. 10 month old virgin mouse. Taken by biopsy. EMBL AAH34523.1.
[2]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000050166.
[3]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000050166.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC149052 Genomic DNA. No translation available.
BC034523 mRNA. Translation: AAH34523.1.
RefSeqXP_006539737.1. XM_006539674.1.
UniGeneMm.1741.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000049912; ENSMUSP00000050166; ENSMUSG00000002983.
GeneID19698.

Organism-specific databases

MGIMGI:103289. Relb.

Phylogenomic databases

GeneTreeENSGT00500000044765.
HOGENOMHOG000148598.
HOVERGENHBG017021.

Gene expression databases

GenevestigatorQ8K220.

Family and domain databases

Gene3D2.60.40.10. 1 hit.
2.60.40.340. 1 hit.
InterProIPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002909. IPT.
IPR000451. NF_Rel_Dor.
IPR008967. p53-like_TF_DNA-bd.
IPR011539. RHD.
[Graphical view]
PfamPF00554. RHD. 1 hit.
[Graphical view]
PRINTSPR00057. NFKBTNSCPFCT.
SMARTSM00429. IPT. 1 hit.
[Graphical view]
SUPFAMSSF49417. SSF49417. 1 hit.
SSF81296. SSF81296. 1 hit.
PROSITEPS01204. REL_1. 1 hit.
PS50254. REL_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

SOURCESearch...

Entry information

Entry nameQ8K220_MOUSE
AccessionPrimary (citable) accession number: Q8K220
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: April 16, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)