Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q8K1L2

- SPIN4_MOUSE

UniProt

Q8K1L2 - SPIN4_MOUSE

Protein

Spindlin-4

Gene

Spin4

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 83 (01 Oct 2014)
      Sequence version 1 (01 Oct 2002)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Biological processi

    1. gamete generation Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Spindlin-4
    Gene namesi
    Name:Spin4
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome X

    Organism-specific databases

    MGIiMGI:2444925. Spin4.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 249249Spindlin-4PRO_0000313795Add
    BLAST

    Proteomic databases

    PRIDEiQ8K1L2.

    PTM databases

    PhosphoSiteiQ8K1L2.

    Expressioni

    Gene expression databases

    BgeeiQ8K1L2.
    CleanExiMM_SPIN4.
    GenevestigatoriQ8K1L2.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8K1L2.
    SMRiQ8K1L2. Positions 38-247.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the SPIN/STSY family.Curated

    Phylogenomic databases

    eggNOGiNOG329027.
    GeneTreeiENSGT00550000074439.
    HOGENOMiHOG000293367.
    HOVERGENiHBG000686.
    InParanoidiQ8K1L2.
    OMAiHGRKDEW.
    OrthoDBiEOG7CK37K.
    PhylomeDBiQ8K1L2.
    TreeFamiTF332665.

    Family and domain databases

    InterProiIPR003671. SPIN/Ssty.
    IPR029578. Spindlin-4.
    [Graphical view]
    PANTHERiPTHR10405. PTHR10405. 1 hit.
    PTHR10405:SF9. PTHR10405:SF9. 1 hit.
    PfamiPF02513. Spin-Ssty. 3 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8K1L2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSPPTVPPTG VDGVSAYLMK KRHTHKKQRR KPTFLTHRNI VGCRIQHGWK    50
    EGNEPVEQWK GTVLEQVSVK PTLYIIKYDG KDSVYGLELH RDKRVLALEI 100
    LPERVPSPRI DSRLADSLVG KAVGHVFEGE HGKKDEWKGM VLARAPIMDT 150
    WFYITYEKDP VLYMYTLLDD YKDGDLRIIP DSNYYFPAAE QEPGEVLDSL 200
    VGKQVEHAKD DGSKRTGIFI HQVVAKPSVY FIKFDDDIHI YVYGLVKTP 249
    Length:249
    Mass (Da):28,508
    Last modified:October 1, 2002 - v1
    Checksum:i0B0485959A4A2F10
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti41 – 411V → G in BAC33186. (PubMed:16141072)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK036158 mRNA. Translation: BAC29325.1.
    AK043030 mRNA. Translation: BAC31440.1.
    AK047896 mRNA. Translation: BAC33186.1.
    AK147852 mRNA. Translation: BAE28181.1.
    AK155170 mRNA. Translation: BAE33091.1.
    BX470092 Genomic DNA. Translation: CAM18132.1.
    BC027796 mRNA. Translation: AAH27796.1.
    CCDSiCCDS30282.1.
    RefSeqiNP_848868.1. NM_178753.4.
    UniGeneiMm.115205.

    Genome annotation databases

    EnsembliENSMUST00000096367; ENSMUSP00000094095; ENSMUSG00000071722.
    GeneIDi270624.
    KEGGimmu:270624.
    UCSCiuc009tts.2. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK036158 mRNA. Translation: BAC29325.1 .
    AK043030 mRNA. Translation: BAC31440.1 .
    AK047896 mRNA. Translation: BAC33186.1 .
    AK147852 mRNA. Translation: BAE28181.1 .
    AK155170 mRNA. Translation: BAE33091.1 .
    BX470092 Genomic DNA. Translation: CAM18132.1 .
    BC027796 mRNA. Translation: AAH27796.1 .
    CCDSi CCDS30282.1.
    RefSeqi NP_848868.1. NM_178753.4.
    UniGenei Mm.115205.

    3D structure databases

    ProteinModelPortali Q8K1L2.
    SMRi Q8K1L2. Positions 38-247.
    ModBasei Search...
    MobiDBi Search...

    PTM databases

    PhosphoSitei Q8K1L2.

    Proteomic databases

    PRIDEi Q8K1L2.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000096367 ; ENSMUSP00000094095 ; ENSMUSG00000071722 .
    GeneIDi 270624.
    KEGGi mmu:270624.
    UCSCi uc009tts.2. mouse.

    Organism-specific databases

    CTDi 139886.
    MGIi MGI:2444925. Spin4.

    Phylogenomic databases

    eggNOGi NOG329027.
    GeneTreei ENSGT00550000074439.
    HOGENOMi HOG000293367.
    HOVERGENi HBG000686.
    InParanoidi Q8K1L2.
    OMAi HGRKDEW.
    OrthoDBi EOG7CK37K.
    PhylomeDBi Q8K1L2.
    TreeFami TF332665.

    Miscellaneous databases

    NextBioi 393351.
    PROi Q8K1L2.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q8K1L2.
    CleanExi MM_SPIN4.
    Genevestigatori Q8K1L2.

    Family and domain databases

    InterProi IPR003671. SPIN/Ssty.
    IPR029578. Spindlin-4.
    [Graphical view ]
    PANTHERi PTHR10405. PTHR10405. 1 hit.
    PTHR10405:SF9. PTHR10405:SF9. 1 hit.
    Pfami PF02513. Spin-Ssty. 3 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J and NOD.
      Tissue: Cerebellum and Head.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6J.
    3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: FVB/N.
      Tissue: Mammary tumor.

    Entry informationi

    Entry nameiSPIN4_MOUSE
    AccessioniPrimary (citable) accession number: Q8K1L2
    Secondary accession number(s): Q8BXD0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 15, 2008
    Last sequence update: October 1, 2002
    Last modified: October 1, 2014
    This is version 83 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3