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Q8K1L2 (SPIN4_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified March 6, 2013. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Spindlin-4
Gene names
Name:Spin4
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length249 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the SPIN/STSY family.

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processgamete generation

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 249249Spindlin-4
PRO_0000313795

Experimental info

Sequence conflict411V → G in BAC33186. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Q8K1L2 [UniParc].

Last modified October 1, 2002. Version 1.
Checksum: 0B0485959A4A2F10

FASTA24928,508
        10         20         30         40         50         60 
MSPPTVPPTG VDGVSAYLMK KRHTHKKQRR KPTFLTHRNI VGCRIQHGWK EGNEPVEQWK 

        70         80         90        100        110        120 
GTVLEQVSVK PTLYIIKYDG KDSVYGLELH RDKRVLALEI LPERVPSPRI DSRLADSLVG 

       130        140        150        160        170        180 
KAVGHVFEGE HGKKDEWKGM VLARAPIMDT WFYITYEKDP VLYMYTLLDD YKDGDLRIIP 

       190        200        210        220        230        240 
DSNYYFPAAE QEPGEVLDSL VGKQVEHAKD DGSKRTGIFI HQVVAKPSVY FIKFDDDIHI 


YVYGLVKTP

« Hide

References

[1]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6J and NOD.
Tissue: Cerebellum and Head.
[2]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J.
[3]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N.
Tissue: Mammary tumor.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AK036158 mRNA. Translation: BAC29325.1.
AK043030 mRNA. Translation: BAC31440.1.
AK047896 mRNA. Translation: BAC33186.1.
AK147852 mRNA. Translation: BAE28181.1.
AK155170 mRNA. Translation: BAE33091.1.
BX470092 Genomic DNA. Translation: CAM18132.1.
BC027796 mRNA. Translation: AAH27796.1.
IPIIPI00169783.
RefSeqNP_848868.1. NM_178753.4.
UniGeneMm.115205.

3D structure databases

ProteinModelPortalQ8K1L2.
SMRQ8K1L2. Positions 38-247.
ModBaseSearch...

PTM databases

PhosphoSiteQ8K1L2.

Proteomic databases

PRIDEQ8K1L2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000096367; ENSMUSP00000094095; ENSMUSG00000071722.
GeneID270624.
KEGGmmu:270624.
UCSCuc009tts.2. mouse.

Organism-specific databases

CTD139886.
MGIMGI:2444925. Spin4.

Phylogenomic databases

eggNOGNOG329027.
GeneTreeENSGT00550000074439.
HOGENOMHOG000293367.
HOVERGENHBG000686.
InParanoidQ8K1L2.
OrthoDBEOG4N30PP.

Gene expression databases

BgeeQ8K1L2.
CleanExMM_SPIN4.
GenevestigatorQ8K1L2.

Family and domain databases

InterProIPR003671. Spin_Ssty.
[Graphical view]
PfamPF02513. Spin-Ssty. 3 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio393351.
SOURCESearch...

Entry information

Entry nameSPIN4_MOUSE
AccessionPrimary (citable) accession number: Q8K1L2
Secondary accession number(s): Q8BXD0
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: October 1, 2002
Last modified: March 6, 2013
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

SIMILARITY comments

Index of protein domains and families

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