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Protein

Splicing factor 45

Gene

Rbm17

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Splice factor that binds to the single-stranded 3'AG at the exon/intron border and promotes its utilization in the second catalytic step. Involved in the regulation of alternative splicing and the utilization of cryptic splice sites (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

  • alternative mRNA splicing, via spliceosome Source: UniProtKB
  • RNA splicing, via transesterification reactions Source: UniProtKB
Complete GO annotation...

Keywords - Biological processi

mRNA processing, mRNA splicing

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Splicing factor 45
Alternative name(s):
45 kDa-splicing factor
RNA-binding motif protein 17
Gene namesi
Name:Rbm17
Synonyms:Spf45
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 2

Organism-specific databases

MGIiMGI:1924188. Rbm17.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: MGI
  • protein complex Source: MGI
  • spliceosomal complex Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Nucleus, Spliceosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 405404Splicing factor 45PRO_0000081904Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei2 – 21N-acetylserineBy similarity
Modified residuei2 – 21PhosphoserineBy similarity
Modified residuei21 – 211N6-acetyllysineBy similarity
Modified residuei41 – 411N6-acetyllysineCombined sources
Modified residuei71 – 711PhosphothreonineBy similarity
Modified residuei155 – 1551PhosphoserineCombined sources
Modified residuei169 – 1691PhosphoserineBy similarity
Modified residuei222 – 2221PhosphoserineBy similarity
Modified residuei237 – 2371PhosphothreonineBy similarity
Modified residuei266 – 2661PhosphoserineBy similarity
Modified residuei295 – 2951PhosphoserineBy similarity
Modified residuei297 – 2971PhosphoserineBy similarity

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

EPDiQ8JZX4.
MaxQBiQ8JZX4.
PaxDbiQ8JZX4.
PeptideAtlasiQ8JZX4.
PRIDEiQ8JZX4.

PTM databases

iPTMnetiQ8JZX4.
PhosphoSiteiQ8JZX4.

Expressioni

Gene expression databases

BgeeiENSMUSG00000037197.
CleanExiMM_RBM17.
ExpressionAtlasiQ8JZX4. baseline and differential.
GenevisibleiQ8JZX4. MM.

Interactioni

Subunit structurei

Binds SXL. Associates with the spliceosome. Interacts with SF3B1, SF1 and U2AF2 (By similarity).By similarity

Protein-protein interaction databases

BioGridi218413. 1 interaction.
DIPiDIP-60651N.
IntActiQ8JZX4. 1 interaction.
MINTiMINT-4135305.
STRINGi10090.ENSMUSP00000041831.

Structurei

3D structure databases

ProteinModelPortaliQ8JZX4.
SMRiQ8JZX4. Positions 305-405.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini235 – 28349G-patchPROSITE-ProRule annotationAdd
BLAST
Domaini310 – 38980RRMAdd
BLAST

Sequence similaritiesi

Contains 1 G-patch domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1996. Eukaryota.
ENOG410XWJ5. LUCA.
GeneTreeiENSGT00790000123099.
HOGENOMiHOG000231726.
HOVERGENiHBG059363.
InParanoidiQ8JZX4.
KOiK12840.
OMAiNEYDPMW.
OrthoDBiEOG091G0I8J.
PhylomeDBiQ8JZX4.
TreeFamiTF313987.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR000467. G_patch_dom.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
IPR016967. Splicing_factor_SPF45.
[Graphical view]
PfamiPF01585. G-patch. 1 hit.
PF00076. RRM_1. 1 hit.
[Graphical view]
PIRSFiPIRSF031066. Splicing_factor_SPF45. 1 hit.
SMARTiSM00443. G_patch. 1 hit.
SM00361. RRM_1. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50174. G_PATCH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8JZX4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLYDDLGVE TSDSKTEGWS KNFKLLQSQL QVKKAALTQA KSQRTKQSTV
60 70 80 90 100
LAPVIDLKRG GSSDDRQIAD TPPHVAAGLK DPVPSGFSAG EVLIPLADEY
110 120 130 140 150
DPMFPNDYEK VVKRQREERQ RQRELERQKE IEEREKRRKD RHEASGFSRR
160 170 180 190 200
PDPDSDEDED YERERRKRSM GGAAIAPPTS LVEKDKELPR DFPYEEDSRP
210 220 230 240 250
RSQSSKAAIP PPVYEEPDRP RSPTGPSNSF LANMGGTVAH KIMQKYGFRE
260 270 280 290 300
GQGLGKHEQG LSTALSVEKT SKRGGKIIVG DATEKGEAQD ASKKSDSNPL
310 320 330 340 350
TEILKCPTKV VLLRNMVGAG EVDEDLEVET KEECEKYGKV GKCVIFEIPG
360 370 380 390 400
APDDEAVRIF LEFERVESAI KAVVDLNGRY FGGRVVKACF YNLDKFRVLD

LAEQV
Length:405
Mass (Da):45,304
Last modified:October 1, 2002 - v1
Checksum:i2BCAE02BFA7AB8CA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF083384 mRNA. Translation: AAC64085.1.
AL831794 Genomic DNA. Translation: CAM13750.1.
BC034896 mRNA. Translation: AAH34896.1.
CCDSiCCDS15684.1.
RefSeqiNP_690037.1. NM_152824.1.
UniGeneiMm.182769.

Genome annotation databases

EnsembliENSMUST00000040314; ENSMUSP00000041831; ENSMUSG00000037197.
GeneIDi76938.
KEGGimmu:76938.
UCSCiuc008iio.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF083384 mRNA. Translation: AAC64085.1.
AL831794 Genomic DNA. Translation: CAM13750.1.
BC034896 mRNA. Translation: AAH34896.1.
CCDSiCCDS15684.1.
RefSeqiNP_690037.1. NM_152824.1.
UniGeneiMm.182769.

3D structure databases

ProteinModelPortaliQ8JZX4.
SMRiQ8JZX4. Positions 305-405.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi218413. 1 interaction.
DIPiDIP-60651N.
IntActiQ8JZX4. 1 interaction.
MINTiMINT-4135305.
STRINGi10090.ENSMUSP00000041831.

PTM databases

iPTMnetiQ8JZX4.
PhosphoSiteiQ8JZX4.

Proteomic databases

EPDiQ8JZX4.
MaxQBiQ8JZX4.
PaxDbiQ8JZX4.
PeptideAtlasiQ8JZX4.
PRIDEiQ8JZX4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000040314; ENSMUSP00000041831; ENSMUSG00000037197.
GeneIDi76938.
KEGGimmu:76938.
UCSCiuc008iio.1. mouse.

Organism-specific databases

CTDi84991.
MGIiMGI:1924188. Rbm17.

Phylogenomic databases

eggNOGiKOG1996. Eukaryota.
ENOG410XWJ5. LUCA.
GeneTreeiENSGT00790000123099.
HOGENOMiHOG000231726.
HOVERGENiHBG059363.
InParanoidiQ8JZX4.
KOiK12840.
OMAiNEYDPMW.
OrthoDBiEOG091G0I8J.
PhylomeDBiQ8JZX4.
TreeFamiTF313987.

Miscellaneous databases

PROiQ8JZX4.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000037197.
CleanExiMM_RBM17.
ExpressionAtlasiQ8JZX4. baseline and differential.
GenevisibleiQ8JZX4. MM.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR000467. G_patch_dom.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
IPR016967. Splicing_factor_SPF45.
[Graphical view]
PfamiPF01585. G-patch. 1 hit.
PF00076. RRM_1. 1 hit.
[Graphical view]
PIRSFiPIRSF031066. Splicing_factor_SPF45. 1 hit.
SMARTiSM00443. G_patch. 1 hit.
SM00361. RRM_1. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50174. G_PATCH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSPF45_MOUSE
AccessioniPrimary (citable) accession number: Q8JZX4
Secondary accession number(s): A2AP41, O75939
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 19, 2003
Last sequence update: October 1, 2002
Last modified: September 7, 2016
This is version 117 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.