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Protein
Submitted name:

Putative outer capsid VP4

Gene
N/A
Organism
Grass carp reovirus
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative outer capsid VP4Imported
OrganismiGrass carp reovirusImported
Taxonomic identifieri128987 [NCBI]
Taxonomic lineageiVirusesdsRNA virusesReoviridaeSpinareovirinaeAquareovirus

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3IYLelectron microscopy3.30A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T1-648[»]
3K1Qelectron microscopy4.50I/J/K/O/P/Q/U/V/W/X10-648[»]
ProteinModelPortaliQ8JU67.
SMRiQ8JU67. Positions 10-42.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8JU67.

Family & Domainsi

Family and domain databases

Gene3Di1.10.2040.10. 2 hits.
2.60.120.420. 1 hit.
InterProiIPR009113. Mu1/VP4.
IPR015962. Mu1_membr_pen_a-bundle_sub2.
IPR015960. Mu1_membr_pen_b-sand_sub.
[Graphical view]
PfamiPF05993. Reovirus_M2. 1 hit.
[Graphical view]
SUPFAMiSSF69908. SSF69908. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8JU67-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGNVQTSVNT YNITGDGNSF TPTSDMTSTA APAIDLKPGV LNPTGKLWRP
60 70 80 90 100
VGTSVATIDS LAIVSDRFGQ YSFVNEGMRE TFSKALFDIN MWQPLFQATK
110 120 130 140 150
TGCGPIVLSS FTTTTSGYVG ATAGDALDNP VTNGVFISTV QIMNLQRTIA
160 170 180 190 200
ARMRDVALWQ KHLDTAMTML TPDISAGSAS CNWKSLLAFA KDILPLDNLC
210 220 230 240 250
LTYPNEFYNV AIHRYPALKP GNPDTKLPDA QAHPLGEVAG AFNAATSEVG
260 270 280 290 300
SLVGSSSTLS QAISTMAGKD LDLIEADTPL PVSVFTPSLA PRSYRPAFIK
310 320 330 340 350
PEDAKWIAEF NNSSLIRKTL TYSGATYTVQ LGPGPTRVID MNAMIDSVLT
360 370 380 390 400
LDVSGTILPY DTNPDLSTSV PAFVLIQTSV PIQQVTTAAN ITAITVVSAA
410 420 430 440 450
GASAINLAIN VRGQPRFNML HLQATFERET ITGIPYIYGL GTFLIPSPTS
460 470 480 490 500
SSNFSNPTLM DGLLTVTPVL LRETTYKGEV VDAIVPATVM ANQTSEEVAS
510 520 530 540 550
ALANDAIVLV SNHLNKLANV VGDAIPVASR TDDSATSAIV SRLAVQHKLS
560 570 580 590 600
QVGQASPTPP DYPLLWRRAK RAASMFVSNP SLALQVGIPV LTQSGMLSAL
610 620 630 640
TSGVGTALRT GSLGKGVTDA SEKLRARQSL TVAKQAFFDQ IGSLWPGK
Length:648
Mass (Da):68,597
Last modified:October 1, 2002 - v1
Checksum:iB0EE242233903F4B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF403392 Genomic RNA. Translation: AAM92737.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF403392 Genomic RNA. Translation: AAM92737.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3IYLelectron microscopy3.30A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T1-648[»]
3K1Qelectron microscopy4.50I/J/K/O/P/Q/U/V/W/X10-648[»]
ProteinModelPortaliQ8JU67.
SMRiQ8JU67. Positions 10-42.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiQ8JU67.

Family and domain databases

Gene3Di1.10.2040.10. 2 hits.
2.60.120.420. 1 hit.
InterProiIPR009113. Mu1/VP4.
IPR015962. Mu1_membr_pen_a-bundle_sub2.
IPR015960. Mu1_membr_pen_b-sand_sub.
[Graphical view]
PfamiPF05993. Reovirus_M2. 1 hit.
[Graphical view]
SUPFAMiSSF69908. SSF69908. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Common evolutionary origin of aquareoviruses and orthoreoviruses revealed by genome characterization of Golden shiner reovirus, Grass carp reovirus, Striped bass reovirus and golden ide reovirus (genus Aquareovirus, family Reoviridae)."
    Attoui H., Fang Q., Mohd Jaafar F., Cantaloube J.F., Biagini P., de Micco P., de Lamballerie X.
    J. Gen. Virol. 83:1941-1951(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: GCRV-873Imported.
  2. "3.3 A cryo-EM structure of a nonenveloped virus reveals a priming mechanism for cell entry."
    Zhang X., Jin L., Fang Q., Hui W.H., Zhou Z.H.
    Cell 141:472-482(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY ELECTRON MICROSCOPY (3.30 ANGSTROMS).
  3. "Backbone model of an aquareovirus virion by cryo-electron microscopy and bioinformatics."
    Cheng L., Zhu J., Hui W.H., Zhang X., Honig B., Fang Q., Zhou Z.H.
    J. Mol. Biol. 397:852-863(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY ELECTRON MICROSCOPY (4.50 ANGSTROMS) OF 10-648.

Entry informationi

Entry nameiQ8JU67_9REOV
AccessioniPrimary (citable) accession number: Q8JU67
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: January 7, 2015
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.