Q8JQF8 (Q8JQF8_9VIRU) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Submitted name: Capsid protein EMBL AAN03857.1
Organism	Adeno-associated virus - 8 EMBL AAN03857.1
Taxonomic identifier	202813 [NCBI]
Taxonomic lineage	Viruses › ssDNA viruses › Parvoviridae › Parvovirinae › Dependovirus › unclassified Dependovirus

Protein attributes

Sequence length	738 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 2QA0
Gene Ontology (GO)
Cellular component	viral capsid Inferred from electronic annotation. Source: InterPro
Molecular function	structural molecule activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q8JQF8 [UniParc]. Last modified October 1, 2002. Version 1. Checksum: 59BC2BE1B148AA14	FASTA	738	81,756
	10 20 30 40 50 60 MAADGYLPDW LEDNLSEGIR EWWALKPGAP KPKANQQKQD DGRGLVLPGY KYLGPFNGLD 70 80 90 100 110 120 KGEPVNAADA AALEHDKAYD QQLQAGDNPY LRYNHADAEF QERLQEDTSF GGNLGRAVFQ 130 140 150 160 170 180 AKKRVLEPLG LVEEGAKTAP GKKRPVEPSP QRSPDSSTGI GKKGQQPARK RLNFGQTGDS 190 200 210 220 230 240 ESVPDPQPLG EPPAAPSGVG PNTMAAGGGA PMADNNEGAD GVGSSSGNWH CDSTWLGDRV 250 260 270 280 290 300 ITTSTRTWAL PTYNNHLYKQ ISNGTSGGAT NDNTYFGYST PWGYFDFNRF HCHFSPRDWQ 310 320 330 340 350 360 RLINNNWGFR PKRLSFKLFN IQVKEVTQNE GTKTIANNLT STIQVFTDSE YQLPYVLGSA 370 380 390 400 410 420 HQGCLPPFPA DVFMIPQYGY LTLNNGSQAV GRSSFYCLEY FPSQMLRTGN NFQFTYTFED 430 440 450 460 470 480 VPFHSSYAHS QSLDRLMNPL IDQYLYYLSR TQTTGGTANT QTLGFSQGGP NTMANQAKNW 490 500 510 520 530 540 LPGPCYRQQR VSTTTGQNNN SNFAWTAGTK YHLNGRNSLA NPGIAMATHK DDEERFFPSN 550 560 570 580 590 600 GILIFGKQNA ARDNADYSDV MLTSEEEIKT TNPVATEEYG IVADNLQQQN TAPQIGTVNS 610 620 630 640 650 660 QGALPGMVWQ NRDVYLQGPI WAKIPHTDGN FHPSPLMGGF GLKHPPPQIL IKNTPVPADP 670 680 690 700 710 720 PTTFNQSKLN SFITQYSTGQ VSVEIEWELQ KENSKRWNPE IQYTSNYYKS TSVDFAVNTE 730 GVYSEPRPIG TRYLTRNL

References

[1]	"Novel adeno-associated viruses from rhesus monkeys as vectors for human gene therapy." Gao G.P., Alvira M.R., Wang L., Calcedo R., Johnston J., Wilson J.M. Proc. Natl. Acad. Sci. U.S.A. 99:11854-11859(2002) [PubMed: 12192090] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Structure of adeno-associated virus serotype 8, a gene therapy vector." Nam H.J., Lane M.D., Padron E., Gurda B., McKenna R., Kohlbrenner E., Aslanidi G., Byrne B., Muzyczka N., Zolotukhin S., Agbandje-McKenna M. J. Virol. 81:12260-12271(2007) [PubMed: 17728238] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 220-738.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AF513852 Genomic DNA. Translation: AAN03857.1.

RefSeq

YP_077180.1. NC_006261.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2QA0	X-ray	2.60	A	220-738	[»]
3RA2	X-ray	2.70	A	220-738	[»]
3RA4	X-ray	2.70	A	220-738	[»]
3RA8	X-ray	2.70	A	220-738	[»]
3RA9	X-ray	2.70	A	220-738	[»]
3RAA	X-ray	3.20	A	220-738	[»]

ProteinModelPortal

Q8JQF8.

SMR

Q8JQF8. Positions 220-738.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

5075992.

Family and domain databases

InterPro

IPR016184. Capsid/spike_ssDNA_virus.
IPR001403. Parvovirus_coat.
IPR013607. Parvovirus_coat_VP1_N.
[Graphical view]

Gene3D

G3DSA:2.170.30.10. Parvo_coat. 1 hit.

Pfam

PF00740. Parvo_coat. 1 hit.
PF08398. Parvo_coat_N. 1 hit.
[Graphical view]

SUPFAM

SSF88645. Capsid/spike_ssDNA_virus. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Q8JQF8_9VIRU

Accession

Primary (citable) accession number: Q8JQF8

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2002
Last sequence update:	October 1, 2002
Last modified:	November 16, 2011
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)