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Protein
Submitted name:

Small nuclear ribonucleoprotein D1

Gene

snrpd1

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • heart development Source: ZFIN
  • spliceosomal complex assembly Source: GO_Central
  • spliceosomal snRNP assembly Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

RibonucleoproteinImported

Keywords - Ligandi

Viral nucleoproteinImported

Enzyme and pathway databases

ReactomeiR-DRE-191859. snRNP Assembly.
R-DRE-72163. mRNA Splicing - Major Pathway.
R-DRE-72165. mRNA Splicing - Minor Pathway.

Names & Taxonomyi

Protein namesi
Submitted name:
Small nuclear ribonucleoprotein D1Imported
Submitted name:
Snrpd1 proteinImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:snrpd1Imported
Synonyms:snprd1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 19

Organism-specific databases

ZFINiZDB-GENE-020419-14. snrpd1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Virion

Expressioni

Gene expression databases

BgeeiENSDARG00000011648.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000027770.

Structurei

3D structure databases

SMRiQ8JHH1. Positions 2-81.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 7066SmInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG3428. Eukaryota.
COG1958. LUCA.
GeneTreeiENSGT00510000047245.
HOGENOMiHOG000182713.
HOVERGENiHBG061491.
KOiK11087.
OMAiQMNTALR.
OrthoDBiEOG091G11O6.
PhylomeDBiQ8JHH1.
TreeFamiTF314224.

Family and domain databases

InterProiIPR027141. LSm4/Sm_D1/D3.
IPR010920. LSM_dom.
IPR001163. LSM_dom_euk/arc.
[Graphical view]
PANTHERiPTHR23338. PTHR23338. 1 hit.
PfamiPF01423. LSM. 1 hit.
[Graphical view]
SMARTiSM00651. Sm. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8JHH1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLVRFLMKL SHETVTIELK NGTQVHGTIT GVDVSMNTHL KAVKMTLKNR
60 70 80 90 100
EPTQLESLSI RGNNIRYFIL PDSLPLDTLL VDIEPKVKSK KREAVAGRGR
110
GRGRGRGRGR GRGRGGPRR
Length:119
Mass (Da):13,284
Last modified:October 1, 2002 - v1
Checksum:i0C85DE388A3557E7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU424444 Genomic DNA. No translation available.
BC071543 mRNA. Translation: AAH71543.1.
AF506225 mRNA. Translation: AAM34669.1.
RefSeqiNP_775359.1. NM_173252.2.
UniGeneiDr.76122.

Genome annotation databases

EnsembliENSDART00000013217; ENSDARP00000027770; ENSDARG00000011648.
GeneIDi192331.
KEGGidre:192331.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU424444 Genomic DNA. No translation available.
BC071543 mRNA. Translation: AAH71543.1.
AF506225 mRNA. Translation: AAM34669.1.
RefSeqiNP_775359.1. NM_173252.2.
UniGeneiDr.76122.

3D structure databases

SMRiQ8JHH1. Positions 2-81.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000027770.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000013217; ENSDARP00000027770; ENSDARG00000011648.
GeneIDi192331.
KEGGidre:192331.

Organism-specific databases

CTDi6632.
ZFINiZDB-GENE-020419-14. snrpd1.

Phylogenomic databases

eggNOGiKOG3428. Eukaryota.
COG1958. LUCA.
GeneTreeiENSGT00510000047245.
HOGENOMiHOG000182713.
HOVERGENiHBG061491.
KOiK11087.
OMAiQMNTALR.
OrthoDBiEOG091G11O6.
PhylomeDBiQ8JHH1.
TreeFamiTF314224.

Enzyme and pathway databases

ReactomeiR-DRE-191859. snRNP Assembly.
R-DRE-72163. mRNA Splicing - Major Pathway.
R-DRE-72165. mRNA Splicing - Minor Pathway.

Gene expression databases

BgeeiENSDARG00000011648.

Family and domain databases

InterProiIPR027141. LSm4/Sm_D1/D3.
IPR010920. LSM_dom.
IPR001163. LSM_dom_euk/arc.
[Graphical view]
PANTHERiPTHR23338. PTHR23338. 1 hit.
PfamiPF01423. LSM. 1 hit.
[Graphical view]
SMARTiSM00651. Sm. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ8JHH1_DANRE
AccessioniPrimary (citable) accession number: Q8JHH1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: September 7, 2016
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.