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Q8JFN5 (Q8JFN5_ONCMY) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Invariant chain S25-7 EMBL AAL58576.1
Submitted name:
MHC class II invariant chain-like protein 1 EMBL AAL91668.1
Gene names
Name:Onmy-Iclp-1 EMBL AAL91668.1
OrganismOncorhynchus mykiss (Rainbow trout) (Salmo gairdneri) EMBL AAL58576.1
Taxonomic identifier8022 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Euteleostei › Protacanthopterygii › Salmoniformes › Salmonidae › Salmoninae › Oncorhynchus

Protein attributes

Sequence length278 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q8JFN5 [UniParc].

Last modified October 1, 2002. Version 1.
Checksum: 3EBB01A97D98F662

FASTA27831,799
        10         20         30         40         50         60 
MEEQQQRDDA LLERTGSQDV ILPMTATRGA SNSRPLKIAG FTVLACLLLA GQAFTAYMVF 

        70         80         90        100        110        120 
NQRGQIHDME KTNDNMRKQL RNRPPVAPVQ MHMPMLNMPR LIDFTDEDTK TEKTPMTKLE 

       130        140        150        160        170        180 
ATAIVSLEKQ VKDLLQSPQL PQFNETFLAN LQSLKRQMEE AEWKGFETWA RNWLLFQMAQ 

       190        200        210        220        230        240 
EKPPAPTTPQ PAAGLQTKCN LEKSFHDRKL GAYLPQCDEQ GNYLPMQCWH ATGFCWCVDK 

       250        260        270 
NGKVIQGTSI RGRATCDRVP SRMAAFPRMM QLKEYKDE

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References

[1]"Alternate forms of MHC class II-associated invariant chain are not produced by alternative splicing in rainbow trout (Oncorhynchus mykiss) but are encoded by separate genes."
Fujiki K., Smith C.M., Liu L., Sundick R.S., Dixon B.
Dev. Comp. Immunol. 27:377-391(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Head kidney EMBL AAL58576.1.
[2]"MHC class II invariant chain homologues in rainbow trout (Oncorhynchus mykiss)."
Dijkstra J.M., Kiryu I., Kollner B., Yoshiura Y., Ototake M.
Fish Shellfish Immunol. 15:91-105(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AY065836 mRNA. Translation: AAL58576.1.
AY081776 mRNA. Translation: AAL91668.1.
RefSeqNP_001117914.1. NM_001124442.1.
UniGeneOmy.7986.

3D structure databases

HSSPHSSP built from PDB template 1ICF based on UniProtKB P04233.
ProteinModelPortalQ8JFN5.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID100136156.

Phylogenomic databases

HOVERGENHBG107423.

Family and domain databases

Gene3D1.10.870.10. 1 hit.
4.10.800.10. 1 hit.
InterProIPR015386. MHC_II-assoc_invar/CLIP_MHC-bd.
IPR022339. MHC_II-assoc_invar_chain.
IPR011988. MHC_II-assoc_invariant_trimer.
IPR000716. Thyroglobulin_1.
[Graphical view]
PANTHERPTHR14093. PTHR14093. 1 hit.
PfamPF09307. MHC2-interact. 1 hit.
PF08831. MHCassoc_trimer. 1 hit.
PF00086. Thyroglobulin_1. 1 hit.
[Graphical view]
PIRSFPIRSF001992. CD74_antigen. 1 hit.
PRINTSPR01990. CD74ANTIGEN.
SMARTSM00211. TY. 1 hit.
[Graphical view]
SUPFAMSSF48305. MHC_II-assoc_invariant_trimer. 1 hit.
SSF57610. Thyroglobulin_1. 1 hit.
PROSITEPS00484. THYROGLOBULIN_1_1. 1 hit.
PS51162. THYROGLOBULIN_1_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ8JFN5_ONCMY
AccessionPrimary (citable) accession number: Q8JFN5
Secondary accession number(s): Q8MHC0
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: April 3, 2013
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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