Q8JFN4 (Q8JFN4_ONCMY) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Submitted name: Invariant chain INVX EMBL AAL58577.1
Organism	Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri) EMBL AAL58577.1
Taxonomic identifier	8022 [NCBI]
Taxonomic lineage	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Euteleostei › Protacanthopterygii › Salmoniformes › Salmonoidei › Salmonidae › Salmoninae › Oncorhynchus

Protein attributes

Sequence length	214 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological_process	antigen processing and presentation Inferred from electronic annotation. Source: InterPro immune response Inferred from electronic annotation. Source: InterPro intracellular protein transport Inferred from electronic annotation. Source: InterPro
Cellular_component	membrane Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q8JFN4 [UniParc]. Last modified October 1, 2002. Version 1. Checksum: 0161BE6DE6882CA5	FASTA	214	24,606
	10 20 30 40 50 60 MEEQQQQRHD DALLERAGSQ DVILPITTNT RASNSRAFKV AGLTVLACLL LAGQALTTYL 70 80 90 100 110 120 VLNQRGQIYD MQKSNGNMRK QLRNRPPAVA PVKMQTPMLN MARLIDFTDE DVKTPMTNLE 130 140 150 160 170 180 ATAVAIVSLE EQVKNLLQNP QLPQFNETFL ANLQSLKKQV EETEWEGFET WARYWLLFQM 190 200 210 AQEKPPVLPT PQPVPHQRRP SYPRMMQLKE YKNE

References

[1]

"Alternate forms of MHC class II-associated invariant chain are not produced by alternative splicing in rainbow trout (Oncorhynchus mykiss) but are encoded by separate genes." Fujiki K., Smith C.M., Liu L., Sundick R.S., Dixon B. Dev. Comp. Immunol. 27:377-391(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Head kidney EMBL AAL58577.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AY065837 mRNA. Translation: AAL58577.1.
RefSeq	NP_001117915.1. NM_001124443.1.
UniGene	Omy.7985.
3D structure databases
HSSP	HSSP built from PDB template 1IIE based on UniProtKB P04233.
ProteinModelPortal	Q8JFN4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	100136157.
Phylogenomic databases
HOVERGEN	HBG107423.
Family and domain databases
Gene3D	1.10.870.10. 1 hit.
InterPro	IPR015386. MHC_II-assoc_invar/CLIP_MHC-bd. IPR022339. MHC_II-assoc_invar_chain. IPR011988. MHC_II-assoc_invariant_trimer. [Graphical view]
PANTHER	PTHR14093. PTHR14093. 1 hit.
Pfam	PF09307. MHC2-interact. 1 hit. PF08831. MHCassoc_trimer. 1 hit. [Graphical view]
PIRSF	PIRSF001992. CD74_antigen. 1 hit.
PRINTS	PR01990. CD74ANTIGEN.
SUPFAM	SSF48305. MHC_II-assoc_invariant_trimer. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q8JFN4_ONCMY

Accession

Primary (citable) accession number: Q8JFN4

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2002
Last sequence update:	October 1, 2002
Last modified:	April 3, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)