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Protein
Submitted name:

Putative homing endonuclease

Gene
N/A
Organism
Thermoproteus sp. IC-062
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionEndonucleaseImported, Hydrolase, Nuclease

Names & Taxonomyi

Protein namesi
Submitted name:
Putative homing endonucleaseImported
OrganismiThermoproteus sp. IC-062Imported
Taxonomic identifieri278052 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiThermoprotealesThermoproteaceaeThermoproteus

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2DCHX-ray2.06X8-203[»]
ProteinModelPortaliQ8J309.
SMRiQ8J309.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8J309.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini14 – 155DOD-type homing endonucleaseInterPro annotationAdd BLAST142

Family and domain databases

Gene3Di3.10.28.10. 2 hits.
InterProiView protein in InterPro
IPR027434. Homing_endonucl.
IPR004042. Intein_endonuc.
IPR004860. LAGLIDADG_2.
PfamiView protein in Pfam
PF14528. LAGLIDADG_3. 2 hits.
SUPFAMiSSF55608. SSF55608. 2 hits.
PROSITEiView protein in PROSITE
PS50819. INTEIN_ENDONUCLEASE. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8J309-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRGGRKNMKV WDYLCGLIAA DGHLDEEGYI TISQKDRRFI DKIVALLKSA
60 70 80 90 100
EIKISSLFYD KGAGVWKIKI KDERLYRYLV NNGVIPGKKA HVLRPPSSAV
110 120 130 140 150
DPLWYIIGFI DGDGWVEQVV KRAGDKSYYY IRIGIKTKSK ELRDWIAQTL
160 170 180 190 200
NDLGIRASRA DKSDGYEVHI DGVEAWRLVP HLQNPTHLER AQSVKDNRLS

LLF
Length:203
Mass (Da):23,243
Last modified:March 1, 2003 - v1
Checksum:i7380BCB4F00D8D2A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB081846 Genomic DNA. Translation: BAC16539.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB081846 Genomic DNA. Translation: BAC16539.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2DCHX-ray2.06X8-203[»]
ProteinModelPortaliQ8J309.
SMRiQ8J309.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiQ8J309.

Family and domain databases

Gene3Di3.10.28.10. 2 hits.
InterProiView protein in InterPro
IPR027434. Homing_endonucl.
IPR004042. Intein_endonuc.
IPR004860. LAGLIDADG_2.
PfamiView protein in Pfam
PF14528. LAGLIDADG_3. 2 hits.
SUPFAMiSSF55608. SSF55608. 2 hits.
PROSITEiView protein in PROSITE
PS50819. INTEIN_ENDONUCLEASE. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ8J309_9CREN
AccessioniPrimary (citable) accession number: Q8J309
Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: November 2, 2016
This is version 43 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.