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Protein

Uncharacterized protein C20orf196

Gene

C20orf196

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C20orf196
Gene namesi
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 20

Organism-specific databases

EuPathDBiHostDB:ENSG00000171984.14
HGNCiHGNC:26318 C20orf196
neXtProtiNX_Q8IYI0

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000171984
PharmGKBiPA145149476

Polymorphism and mutation databases

BioMutaiC20orf196

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002866121 – 205Uncharacterized protein C20orf196Add BLAST205

Proteomic databases

PaxDbiQ8IYI0
PeptideAtlasiQ8IYI0
PRIDEiQ8IYI0

PTM databases

iPTMnetiQ8IYI0
PhosphoSitePlusiQ8IYI0

Expressioni

Gene expression databases

BgeeiENSG00000171984
CleanExiHS_C20orf196
ExpressionAtlasiQ8IYI0 baseline and differential
GenevisibleiQ8IYI0 HS

Organism-specific databases

HPAiHPA040749

Interactioni

Protein-protein interaction databases

BioGridi127244, 3 interactors
IntActiQ8IYI0, 3 interactors
MINTiQ8IYI0
STRINGi9606.ENSP00000305875

Structurei

3D structure databases

ProteinModelPortaliQ8IYI0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG410IVHP Eukaryota
ENOG411156Z LUCA
GeneTreeiENSGT00390000014969
HOGENOMiHOG000013194
HOVERGENiHBG096587
InParanoidiQ8IYI0
OMAiQCLSQKI
OrthoDBiEOG091G0J83
PhylomeDBiQ8IYI0
TreeFamiTF336046

Family and domain databases

InterProiView protein in InterPro
IPR027821 DUF4521
PANTHERiPTHR36863 PTHR36863, 1 hit
PfamiView protein in Pfam
PF15021 DUF4521, 1 hit

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q8IYI0-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAARDATSGS LSEESSALDL PSACDIRDYV LQGPSQEANS EAFSSLEFHS
60 70 80 90 100
FPYSSDVDPD TSNLNIEQNN SWTAENFWLD PAVKGQSEKE EDDGLRKSLD
110 120 130 140 150
RFYEMFGHPQ PGSANSLSAS VCKCLSQKIT QLRGQESQKY ALRSFQMARV
160 170 180 190 200
IFNRDGCSVL QRHSRDTHFY PLEEGSTSLD DEKPNPGLSK DITHFLLQQN

VMKDL
Length:205
Mass (Da):22,938
Last modified:March 1, 2003 - v1
Checksum:i4AF85DA351FF5FAF
GO
Isoform 2 (identifier: Q8IYI0-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     142-195: Missing.

Show »
Length:151
Mass (Da):16,706
Checksum:i48EE73BEA8B6F3E0
GO

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_03214423A → V. Corresponds to variant dbSNP:rs237422Ensembl.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_025125142 – 195Missing in isoform 2. 1 PublicationAdd BLAST54

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK057796 mRNA Translation: BAB71578.1
AK292708 mRNA Translation: BAF85397.1
AL035249 Genomic DNA No translation available.
AL390028 Genomic DNA No translation available.
CH471133 Genomic DNA Translation: EAX10412.1
BC035800 mRNA Translation: AAH35800.1
CCDSiCCDS13091.1 [Q8IYI0-1]
RefSeqiNP_001290406.1, NM_001303477.1 [Q8IYI0-1]
NP_001290407.1, NM_001303478.1
NP_001290408.1, NM_001303479.1
NP_689717.2, NM_152504.3 [Q8IYI0-1]
XP_016883173.1, XM_017027684.1 [Q8IYI0-1]
UniGeneiHs.529340

Genome annotation databases

EnsembliENST00000303142; ENSP00000305875; ENSG00000171984 [Q8IYI0-1]
GeneIDi149840
KEGGihsa:149840
UCSCiuc002wmf.4 human [Q8IYI0-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Similar proteinsi

Entry informationi

Entry nameiCT196_HUMAN
AccessioniPrimary (citable) accession number: Q8IYI0
Secondary accession number(s): A8K9J3, Q5TGA9, Q96LU1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: March 1, 2003
Last modified: May 23, 2018
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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