Q8IXM7 (OD3L1_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Outer dense fiber protein 3-like protein 1

Gene names

Name:

ODF3L1

Organism

Homo sapiens (Human)

Taxonomic identifier

9606 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo

Protein attributes

Sequence length	274 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ODF3 family. Contains 2 DUF1309 repeats.

Ontologies

Keywords
Coding sequence diversity	Polymorphism
Domain	Repeat
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 274	274	Outer dense fiber protein 3-like protein 1		PRO_0000304785
Regions
	Repeat	199 – 224	26	DUF1309 1
	Repeat	235 – 260	26	DUF1309 2
Natural variations
	Natural variant	41	1	P → L. Corresponds to variant rs55905564 [ dbSNP | Ensembl ].		VAR_062204

Sequences

	Sequence		Length	Mass (Da)
	Q8IXM7 [UniParc]. Last modified March 1, 2003. Version 1. Checksum: 158ACA014D428CBF	FASTA	274	31,065
	10 20 30 40 50 60 MKLPKGTRSS VYFAQHPEKE PLPSRQEVKQ TPVIMAKIKG PGPAKYLRPS CTGYIDHDIS 70 80 90 100 110 120 MFKAPAYTLH SRHSEKRMVC HSSPGPCYLL DPKITRFGMS SCPQVPMEER ISNLRLNPTL 130 140 150 160 170 180 ASCQYYFEKI HPPGERRAPQ YTFGYRRPYR VMDLNPAPNQ YQMPLLLGPN TPVSRAAPCY 190 200 210 220 230 240 SLASRDKNWF YKEDVAGGPG PTTYARPEPS IYQNRSPTYS MAKRFAYPLD LTPRPGPGSH 250 260 270 EVQQVTVHKP HIPAFTMGIK HSLHLCPLVI DIRD

References

[1]

Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. , Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W., Venter J.C. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

[2]

"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Brain.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CH471136 Genomic DNA. Translation: EAW99238.1. BC039862 mRNA. Translation: AAH39862.1.
IPI	IPI00217558.
RefSeq	NP_787077.1. NM_175881.3.
UniGene	Hs.144348.
3D structure databases
ProteinModelPortal	Q8IXM7.
ModBase	Search...
Polymorphism databases
DMDM	74728213.
Proteomic databases
PRIDE	Q8IXM7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENST00000332145; ENSP00000329584; ENSG00000182950.
GeneID	161753.
KEGG	hsa:161753.
UCSC	uc002bax.1. human.
Organism-specific databases
CTD	161753.
GeneCards	GC15P076016.
HGNC	HGNC:28735. ODF3L1.
HPA	HPA043960.
neXtProt	NX_Q8IXM7.
PharmGKB	PA134930463.
GenAtlas	Search...
Phylogenomic databases
eggNOG	prNOG19082.
GeneTree	ENSGT00440000039820.
HOGENOM	HBG445401.
HOVERGEN	HBG054464.
InParanoid	Q8IXM7.
OMA	RFGMSSC.
OrthoDB	EOG437RFH.
PhylomeDB	Q8IXM7.
Gene expression databases
ArrayExpress	Q8IXM7.
Bgee	Q8IXM7.
CleanEx	HS_ODF3L1.
Genevestigator	Q8IXM7.
Family and domain databases
InterPro	IPR010736. DUF1309. [Graphical view]
Pfam	PF07004. DUF1309. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	88106.

Entry information

Entry name

OD3L1_HUMAN

Accession

Primary (citable) accession number: Q8IXM7

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 2, 2007
Last sequence update:	March 1, 2003
Last modified:	January 25, 2012
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Chordata Protein Annotation Program

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.