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Protein

Outer dense fiber protein 3-like protein 1

Gene

ODF3L1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Outer dense fiber protein 3-like protein 1
Gene namesi
Name:ODF3L1
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 15

Organism-specific databases

HGNCiHGNC:28735. ODF3L1.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134930463.

Polymorphism and mutation databases

BioMutaiODF3L1.
DMDMi74728213.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 274274Outer dense fiber protein 3-like protein 1PRO_0000304785Add
BLAST

Proteomic databases

PaxDbiQ8IXM7.
PRIDEiQ8IXM7.

PTM databases

iPTMnetiQ8IXM7.
PhosphoSiteiQ8IXM7.

Expressioni

Gene expression databases

BgeeiENSG00000182950.
CleanExiHS_ODF3L1.
GenevisibleiQ8IXM7. HS.

Organism-specific databases

HPAiHPA043960.

Interactioni

Protein-protein interaction databases

BioGridi127801. 2 interactions.
STRINGi9606.ENSP00000329584.

Structurei

3D structure databases

ProteinModelPortaliQ8IXM7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati199 – 22426STPGR 1Add
BLAST
Repeati235 – 26026STPGR 2Add
BLAST

Sequence similaritiesi

Belongs to the ODF3 family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG410IVE8. Eukaryota.
ENOG4111CPZ. LUCA.
GeneTreeiENSGT00440000039820.
HOGENOMiHOG000090412.
HOVERGENiHBG054464.
InParanoidiQ8IXM7.
OMAiAPCYSLA.
OrthoDBiEOG091G09K4.
PhylomeDBiQ8IXM7.
TreeFamiTF325804.

Family and domain databases

InterProiIPR010736. SHIPPO-rpt.
[Graphical view]
PfamiPF07004. SHIPPO-rpt. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8IXM7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLPKGTRSS VYFAQHPEKE PLPSRQEVKQ TPVIMAKIKG PGPAKYLRPS
60 70 80 90 100
CTGYIDHDIS MFKAPAYTLH SRHSEKRMVC HSSPGPCYLL DPKITRFGMS
110 120 130 140 150
SCPQVPMEER ISNLRLNPTL ASCQYYFEKI HPPGERRAPQ YTFGYRRPYR
160 170 180 190 200
VMDLNPAPNQ YQMPLLLGPN TPVSRAAPCY SLASRDKNWF YKEDVAGGPG
210 220 230 240 250
PTTYARPEPS IYQNRSPTYS MAKRFAYPLD LTPRPGPGSH EVQQVTVHKP
260 270
HIPAFTMGIK HSLHLCPLVI DIRD
Length:274
Mass (Da):31,065
Last modified:March 1, 2003 - v1
Checksum:i158ACA014D428CBF
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti41 – 411P → L.
Corresponds to variant rs55905564 [ dbSNP | Ensembl ].
VAR_062204

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH471136 Genomic DNA. Translation: EAW99238.1.
BC039862 mRNA. Translation: AAH39862.1.
CCDSiCCDS10285.1.
RefSeqiNP_787077.1. NM_175881.3.
UniGeneiHs.144348.

Genome annotation databases

EnsembliENST00000332145; ENSP00000329584; ENSG00000182950.
GeneIDi161753.
KEGGihsa:161753.
UCSCiuc002bax.2. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH471136 Genomic DNA. Translation: EAW99238.1.
BC039862 mRNA. Translation: AAH39862.1.
CCDSiCCDS10285.1.
RefSeqiNP_787077.1. NM_175881.3.
UniGeneiHs.144348.

3D structure databases

ProteinModelPortaliQ8IXM7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi127801. 2 interactions.
STRINGi9606.ENSP00000329584.

PTM databases

iPTMnetiQ8IXM7.
PhosphoSiteiQ8IXM7.

Polymorphism and mutation databases

BioMutaiODF3L1.
DMDMi74728213.

Proteomic databases

PaxDbiQ8IXM7.
PRIDEiQ8IXM7.

Protocols and materials databases

DNASUi161753.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000332145; ENSP00000329584; ENSG00000182950.
GeneIDi161753.
KEGGihsa:161753.
UCSCiuc002bax.2. human.

Organism-specific databases

CTDi161753.
GeneCardsiODF3L1.
HGNCiHGNC:28735. ODF3L1.
HPAiHPA043960.
neXtProtiNX_Q8IXM7.
PharmGKBiPA134930463.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IVE8. Eukaryota.
ENOG4111CPZ. LUCA.
GeneTreeiENSGT00440000039820.
HOGENOMiHOG000090412.
HOVERGENiHBG054464.
InParanoidiQ8IXM7.
OMAiAPCYSLA.
OrthoDBiEOG091G09K4.
PhylomeDBiQ8IXM7.
TreeFamiTF325804.

Miscellaneous databases

GenomeRNAii161753.
PROiQ8IXM7.

Gene expression databases

BgeeiENSG00000182950.
CleanExiHS_ODF3L1.
GenevisibleiQ8IXM7. HS.

Family and domain databases

InterProiIPR010736. SHIPPO-rpt.
[Graphical view]
PfamiPF07004. SHIPPO-rpt. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiOD3L1_HUMAN
AccessioniPrimary (citable) accession number: Q8IXM7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 2, 2007
Last sequence update: March 1, 2003
Last modified: September 7, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 15
    Human chromosome 15: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.