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Protein

Zinc finger protein ZFPM1

Gene

ZFPM1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Transcription regulator that plays an essential role in erythroid and megakaryocytic cell differentiation. Essential cofactor that acts via the formation of a heterodimer with transcription factors of the GATA family GATA1, GATA2 and GATA3. Such heterodimer can both activate or repress transcriptional activity, depending on the cell and promoter context. The heterodimer formed with GATA proteins is essential to activate expression of genes such as NFE2, ITGA2B, alpha- and beta-globin, while it represses expression of KLF1. May be involved in regulation of some genes in gonads. May also be involved in cardiac development, in a non-redundant way with ZFPM2/FOG2 (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri241 – 26424C2HC-type 1Add
BLAST
Zinc fingeri290 – 31425C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri320 – 34223C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri348 – 37124C2H2-type 3PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri577 – 699123C2HC-type 2Add
BLAST
Zinc fingeri683 – 70523C2HC-type 3Add
BLAST
Zinc fingeri817 – 83923C2HC-type 4Add
BLAST
Zinc fingeri854 – 87724C2H2-type 4PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri974 – 100027C2HC-type 5Add
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator, Repressor

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Enzyme and pathway databases

ReactomeiREACT_24970. Factors involved in megakaryocyte development and platelet production.

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein ZFPM1
Alternative name(s):
Friend of GATA protein 1
Short name:
FOG-1
Short name:
Friend of GATA 1
Zinc finger protein 89A
Zinc finger protein multitype 1
Gene namesi
Name:ZFPM1
Synonyms:FOG1, ZFN89A
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 16

Organism-specific databases

HGNCiHGNC:19762. ZFPM1.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: Ensembl
  • nucleoplasm Source: Reactome
  • nucleus Source: GO_Central
  • transcriptional repressor complex Source: BHF-UCL
  • transcription factor complex Source: BHF-UCL
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134920282.

Polymorphism and mutation databases

BioMutaiZFPM1.
DMDMi296434508.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10061006Zinc finger protein ZFPM1PRO_0000221041Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei671 – 6711Phosphoserine1 Publication
Modified residuei786 – 7861Phosphoserine2 Publications
Modified residuei901 – 9011Phosphoserine2 Publications
Modified residuei909 – 9091Phosphoserine1 Publication
Modified residuei914 – 9141Phosphoserine1 Publication
Modified residuei935 – 9351PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ8IX07.
PaxDbiQ8IX07.
PRIDEiQ8IX07.

PTM databases

PhosphoSiteiQ8IX07.

Expressioni

Tissue specificityi

Mainly expressed in hematopoietic tissues. Also expressed in adult cerebellum, stomach, lymph node, liver and pancreas. Expressed in fetal heart, liver and spleen.1 Publication

Gene expression databases

BgeeiQ8IX07.
CleanExiHS_ZFPM1.
ExpressionAtlasiQ8IX07. baseline and differential.
GenevisibleiQ8IX07. HS.

Organism-specific databases

HPAiHPA046603.

Interactioni

Subunit structurei

Interacts with corepressor CTBP2; this interaction is however not essential for corepressor activity (By similarity). Interacts with the N-terminal zinc-finger of GATA1, GATA2 and probably GATA3.By similarity1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
GSK3BP498412EBI-3942619,EBI-373586
RBBP4Q090284EBI-3942619,EBI-620823

Protein-protein interaction databases

BioGridi127806. 8 interactions.
DIPiDIP-48415N.
IntActiQ8IX07. 3 interactions.
STRINGi9606.ENSP00000326630.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2XU7X-ray1.90C/D1-15[»]
ProteinModelPortaliQ8IX07.
SMRiQ8IX07. Positions 85-209, 315-347.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni330 – 34112Interaction with TACC3By similarityAdd
BLAST
Regioni794 – 8007Interaction with CTBP2By similarity

Domaini

The CCHC-type zinc fingers 1, 5, 6 and 9 directly bind to GATA-type zinc fingers. The Tyr residue adjacent to the last Cys of the CCHC-type zinc finger is essential for the interaction with GATA-type zinc fingers (By similarity).By similarity

Sequence similaritiesi

Belongs to the FOG (Friend of GATA) family.Curated
Contains 4 C2H2-type zinc fingers.PROSITE-ProRule annotation
Contains 5 C2HC-type zinc fingers.Curated

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri241 – 26424C2HC-type 1Add
BLAST
Zinc fingeri290 – 31425C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri320 – 34223C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri348 – 37124C2H2-type 3PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri577 – 699123C2HC-type 2Add
BLAST
Zinc fingeri683 – 70523C2HC-type 3Add
BLAST
Zinc fingeri817 – 83923C2HC-type 4Add
BLAST
Zinc fingeri854 – 87724C2H2-type 4PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri974 – 100027C2HC-type 5Add
BLAST

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiNOG146797.
GeneTreeiENSGT00530000063823.
HOGENOMiHOG000112626.
HOVERGENiHBG101018.
InParanoidiQ8IX07.
KOiK17441.
OMAiQELEMRP.
OrthoDBiEOG74TWXR.
PhylomeDBiQ8IX07.
TreeFamiTF331342.

Family and domain databases

Gene3Di3.30.160.60. 2 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 9 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8IX07-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRRKQSNPR QIKRSLGDME AREEVQLVGA SHMEQKATAP EAPSPPSADV
60 70 80 90 100
NSPPPLPPPT SPGGPKELEG QEPEPRPTEE EPGSPWSGPD ELEPVVQDGQ
110 120 130 140 150
RRIRARLSLA TGLSWGPFHG SVQTRASSPR QAEPSPALTL LLVDEACWLR
160 170 180 190 200
TLPQALTEAE ANTEIHRKDD ALWCRVTKPV PAGGLLSVLL TAEPHSTPGH
210 220 230 240 250
PVKKEPAEPT CPAPAHDLQL LPQQAGMASI LATAVINKDV FPCKDCGIWY
260 270 280 290 300
RSERNLQAHL LYYCASRQGT GSPAAAATDE KPKETYPNER VCPFPQCRKS
310 320 330 340 350
CPSASSLEIH MRSHSGERPF VCLICLSAFT TKANCERHLK VHTDTLSGVC
360 370 380 390 400
HSCGFISTTR DILYSHLVTN HMVCQPGSKG EIYSPGAGHP ATKLPPDSLG
410 420 430 440 450
SFQQQHTALQ GPLASADLGL APTPSPGLDR KALAEATNGE ARAEPLAQNG
460 470 480 490 500
GSSEPPAAPR SIKVEAVEEP EAAPILGPGE PGPQAPSRTP SPRSPAPARV
510 520 530 540 550
KAELSSPTPG SSPVPGELGL AGALFLPQYV FGPDAAPPAS EILAKMSELV
560 570 580 590 600
HSRLQQGAGA GAGGAQTGLF PGAPKGATCF ECEITFSNVN NYYVHKRLYC
610 620 630 640 650
SGRRAPEDAP AARRPKAPPG PARAPPGQPA EPDAPRSSPG PGAREEGAGG
660 670 680 690 700
AATPEDGAGG RGSEGSQSPG SSVDDAEDDP SRTLCEACNI RFSRHETYTV
710 720 730 740 750
HKRYYCASRH DPPPRRPAAP PGPPGPAAPP APSPAAPVRT RRRRKLYELH
760 770 780 790 800
AAGAPPPPPP GHAPAPESPR PGSGSGSGPG LAPARSPGPA ADGPIDLSKK
810 820 830 840 850
PRRPLPGAPA PALADYHECT ACRVSFHSLE AYLAHKKYSC PAAPPPGALG
860 870 880 890 900
LPAAACPYCP PNGPVRGDLL EHFRLAHGLL LGAPLAGPGV EARTPADRGP
910 920 930 940 950
SPAPAPAASP QPGSRGPRDG LGPEPQEPPP GPPPSPAAAP EAVPPPPAPP
960 970 980 990 1000
SYSDKGVQTP SKGTPAPLPN GNHRYCRLCN IKFSSLSTFI AHKKYYCSSH

AAEHVK
Length:1,006
Mass (Da):104,888
Last modified:May 18, 2010 - v2
Checksum:iE9C2363503A64898
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti22 – 221R → G in AAN45858 (PubMed:12483298).Curated
Sequence conflicti444 – 4474EPLA → AP in AAN45858 (PubMed:12483298).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti70 – 701G → A.
Corresponds to variant rs34916016 [ dbSNP | Ensembl ].
VAR_057491

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF488691 mRNA. Translation: AAN45858.1.
AC116552 Genomic DNA. No translation available.
AC135049 Genomic DNA. No translation available.
CH471184 Genomic DNA. Translation: EAW66806.1.
CCDSiCCDS32502.1.
RefSeqiNP_722520.2. NM_153813.2.
UniGeneiHs.632218.

Genome annotation databases

EnsembliENST00000319555; ENSP00000326630; ENSG00000179588.
GeneIDi161882.
KEGGihsa:161882.
UCSCiuc002fkv.3. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF488691 mRNA. Translation: AAN45858.1.
AC116552 Genomic DNA. No translation available.
AC135049 Genomic DNA. No translation available.
CH471184 Genomic DNA. Translation: EAW66806.1.
CCDSiCCDS32502.1.
RefSeqiNP_722520.2. NM_153813.2.
UniGeneiHs.632218.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2XU7X-ray1.90C/D1-15[»]
ProteinModelPortaliQ8IX07.
SMRiQ8IX07. Positions 85-209, 315-347.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi127806. 8 interactions.
DIPiDIP-48415N.
IntActiQ8IX07. 3 interactions.
STRINGi9606.ENSP00000326630.

PTM databases

PhosphoSiteiQ8IX07.

Polymorphism and mutation databases

BioMutaiZFPM1.
DMDMi296434508.

Proteomic databases

MaxQBiQ8IX07.
PaxDbiQ8IX07.
PRIDEiQ8IX07.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000319555; ENSP00000326630; ENSG00000179588.
GeneIDi161882.
KEGGihsa:161882.
UCSCiuc002fkv.3. human.

Organism-specific databases

CTDi161882.
GeneCardsiGC16P088519.
HGNCiHGNC:19762. ZFPM1.
HPAiHPA046603.
MIMi601950. gene.
neXtProtiNX_Q8IX07.
PharmGKBiPA134920282.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG146797.
GeneTreeiENSGT00530000063823.
HOGENOMiHOG000112626.
HOVERGENiHBG101018.
InParanoidiQ8IX07.
KOiK17441.
OMAiQELEMRP.
OrthoDBiEOG74TWXR.
PhylomeDBiQ8IX07.
TreeFamiTF331342.

Enzyme and pathway databases

ReactomeiREACT_24970. Factors involved in megakaryocyte development and platelet production.

Miscellaneous databases

ChiTaRSiZFPM1. human.
GeneWikiiZFPM1.
GenomeRNAii161882.
NextBioi88126.
PROiQ8IX07.
SOURCEiSearch...

Gene expression databases

BgeeiQ8IX07.
CleanExiHS_ZFPM1.
ExpressionAtlasiQ8IX07. baseline and differential.
GenevisibleiQ8IX07. HS.

Family and domain databases

Gene3Di3.30.160.60. 2 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 9 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning and characterization of the GATA1 cofactor human FOG1 and assessment of its binding to GATA1 proteins carrying D218 substitutions."
    Freson K., Thys C., Wittewrongel C., Vermylen J., Hoylaerts M.F., Van Geet C.
    Hum. Genet. 112:42-49(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, INTERACTION WITH GATA1 AND GATA2.
    Tissue: Megakaryocyte.
  2. "The sequence and analysis of duplication-rich human chromosome 16."
    Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X., Xie G., Hellsten U., Chan Y.M., Altherr M., Couronne O., Aerts A., Bajorek E., Black S., Blumer H., Branscomb E., Brown N.C., Bruno W.J.
    , Buckingham J.M., Callen D.F., Campbell C.S., Campbell M.L., Campbell E.W., Caoile C., Challacombe J.F., Chasteen L.A., Chertkov O., Chi H.C., Christensen M., Clark L.M., Cohn J.D., Denys M., Detter J.C., Dickson M., Dimitrijevic-Bussod M., Escobar J., Fawcett J.J., Flowers D., Fotopulos D., Glavina T., Gomez M., Gonzales E., Goodstein D., Goodwin L.A., Grady D.L., Grigoriev I., Groza M., Hammon N., Hawkins T., Haydu L., Hildebrand C.E., Huang W., Israni S., Jett J., Jewett P.B., Kadner K., Kimball H., Kobayashi A., Krawczyk M.-C., Leyba T., Longmire J.L., Lopez F., Lou Y., Lowry S., Ludeman T., Manohar C.F., Mark G.A., McMurray K.L., Meincke L.J., Morgan J., Moyzis R.K., Mundt M.O., Munk A.C., Nandkeshwar R.D., Pitluck S., Pollard M., Predki P., Parson-Quintana B., Ramirez L., Rash S., Retterer J., Ricke D.O., Robinson D.L., Rodriguez A., Salamov A., Saunders E.H., Scott D., Shough T., Stallings R.L., Stalvey M., Sutherland R.D., Tapia R., Tesmer J.G., Thayer N., Thompson L.S., Tice H., Torney D.C., Tran-Gyamfi M., Tsai M., Ulanovsky L.E., Ustaszewska A., Vo N., White P.S., Williams A.L., Wills P.L., Wu J.-R., Wu K., Yang J., DeJong P., Bruce D., Doggett N.A., Deaven L., Schmutz J., Grimwood J., Richardson P., Rokhsar D.S., Eichler E.E., Gilna P., Lucas S.M., Myers R.M., Rubin E.M., Pennacchio L.A.
    Nature 432:988-994(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "Toward a global characterization of the phosphoproteome in prostate cancer cells: identification of phosphoproteins in the LNCaP cell line."
    Giorgianni F., Zhao Y., Desiderio D.M., Beranova-Giorgianni S.
    Electrophoresis 28:2027-2034(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Prostate cancer.
  5. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Embryonic kidney.
  6. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-786, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  7. "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
    Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.
    Anal. Chem. 81:4493-4501(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  8. "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions."
    Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K.
    Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-901 AND SER-909, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Leukemic T-cell.
  9. "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome."
    Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L., Ye M., Zou H.
    J. Proteomics 96:253-262(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-671; SER-786; SER-901 AND SER-914, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Liver.

Entry informationi

Entry nameiFOG1_HUMAN
AccessioniPrimary (citable) accession number: Q8IX07
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2004
Last sequence update: May 18, 2010
Last modified: July 22, 2015
This is version 117 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 16
    Human chromosome 16: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  6. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.