ID CDAN1_HUMAN Reviewed; 1227 AA. AC Q8IWY9; Q6NYD0; Q7Z7L5; Q969N3; DT 07-NOV-2003, integrated into UniProtKB/Swiss-Prot. DT 18-MAY-2010, sequence version 4. DT 27-MAR-2024, entry version 159. DE RecName: Full=Codanin-1; GN Name=CDAN1; ORFNames=UNQ664/PRO1295; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 3), TISSUE SPECIFICITY, AND RP VARIANTS CDAN1A SER-599; LEU-672; LYS-698; TRP-714; ILE-868; MET-869; RP TRP-1042; VAL-1043 AND LEU-1130. RX PubMed=12434312; DOI=10.1086/344781; RA Dgany O., Avidan N., Delaunay J., Krasnov T., Shalmon L., Shalev H., RA Eidelitz-Markus T., Kapelushnik J., Cattan D., Pariente A., Tulliez M., RA Cretien A., Schischmanoff P.-O., Iolascon A., Fibach E., Koren A., RA Roessler J., Le Merrer M., Yaniv I., Zaizov R., Ben-Asher E., Olender T., RA Lancet D., Beckmann J.S., Tamary H.; RT "Congenital dyserythropoietic anemia type I is caused by mutations in RT codanin-1."; RL Am. J. Hum. Genet. 71:1467-1474(2002). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=16572171; DOI=10.1038/nature04601; RA Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., RA Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., RA FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., RA Abouelleil A., Arachchi H.M., Baradarani L., Birditt B., Bloom S., RA Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K., RA DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R., Fahey J., RA Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G., Johnson E., RA Jones C., Kamat A., Kaur A., Locke D.P., Madan A., Munson G., Jaffe D.B., RA Lui A., Macdonald P., Mauceli E., Naylor J.W., Nesbitt R., Nicol R., RA O'Leary S.B., Ratcliffe A., Rounsley S., She X., Sneddon K.M.B., RA Stewart S., Sougnez C., Stone S.M., Topham K., Vincent D., Wang S., RA Zimmer A.R., Birren B.W., Hood L., Lander E.S., Nusbaum C.; RT "Analysis of the DNA sequence and duplication history of human chromosome RT 15."; RL Nature 440:671-675(2006). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC TISSUE=Kidney, and Ovary; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 669-1016 (ISOFORM 2). RX PubMed=12975309; DOI=10.1101/gr.1293003; RA Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J., RA Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P., RA Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E., Heldens S., Huang A., RA Kim H.S., Klimowski L., Jin Y., Johnson S., Lee J., Lewis L., Liao D., RA Mark M.R., Robbie E., Sanchez C., Schoenfeld J., Seshagiri S., Simmons L., RA Singh J., Smith V., Stinson J., Vagts A., Vandlen R.L., Watanabe C., RA Wieand D., Woods K., Xie M.-H., Yansura D.G., Yi S., Yu G., Yuan J., RA Zhang M., Zhang Z., Goddard A.D., Wood W.I., Godowski P.J., Gray A.M.; RT "The secreted protein discovery initiative (SPDI), a large-scale effort to RT identify novel human secreted and transmembrane proteins: a bioinformatics RT assessment."; RL Genome Res. 13:2265-2270(2003). RN [5] RP SUBCELLULAR LOCATION. RX PubMed=21364188; DOI=10.1182/blood-2010-09-308478; RA Renella R., Roberts N.A., Brown J.M., De Gobbi M., Bird L.E., Hassanali T., RA Sharpe J.A., Sloane-Stanley J., Ferguson D.J., Cordell J., Buckle V.J., RA Higgs D.R., Wood W.G.; RT "Codanin-1 mutations in congenital dyserythropoietic anemia type 1 affect RT HP1-alpha localization in erythroblasts."; RL Blood 117:6928-6938(2011). RN [6] RP SUBCELLULAR LOCATION, FUNCTION, INTERACTION WITH ASF1A AND ASF1B, RP IDENTIFICATION IN A COMPLEX WITH ASF1A; ASF1B; IPO4; HISTONES H3.2 AND H4, RP CHARACTERIZATION OF VARIANTS TRP-714 AND TRP-1042, AND IDENTIFICATION BY RP MASS SPECTROMETRY. RX PubMed=22407294; DOI=10.1038/emboj.2012.55; RA Ask K., Jasencakova Z., Menard P., Feng Y., Almouzni G., Groth A.; RT "Codanin-1, mutated in the anaemic disease CDAI, regulates Asf1 function in RT S-phase histone supply."; RL EMBO J. 31:2013-2023(2012). RN [7] RP ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, CLEAVAGE OF INITIATOR RP METHIONINE [LARGE SCALE ANALYSIS], AND IDENTIFICATION BY MASS SPECTROMETRY RP [LARGE SCALE ANALYSIS]. RX PubMed=22223895; DOI=10.1074/mcp.m111.015131; RA Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T., RA Giglione C.; RT "Comparative large-scale characterisation of plant vs. mammal proteins RT reveals similar and idiosyncratic N-alpha acetylation features."; RL Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012). RN [8] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-71; SER-265 AND SER-285, AND RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma, and Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). CC -!- FUNCTION: May act as a negative regulator of ASF1 in chromatin CC assembly. {ECO:0000269|PubMed:22407294}. CC -!- SUBUNIT: Found in a cytosolic complex with ASF1A, ASF1B, IPO4 and CC histones H3.1 and H4. {ECO:0000269|PubMed:22407294}. CC -!- SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Membrane {ECO:0000305}; CC Multi-pass membrane protein {ECO:0000305}. Note=Mainly detected as a CC cytoplasmic protein. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=2; CC IsoId=Q8IWY9-2; Sequence=Displayed; CC Name=1; CC IsoId=Q8IWY9-1; Sequence=VSP_027097, VSP_027098; CC Name=3; CC IsoId=Q8IWY9-3; Sequence=Not described; CC -!- TISSUE SPECIFICITY: Ubiquitously expressed. Isoform 3 is not found in CC erythroid cells. {ECO:0000269|PubMed:12434312}. CC -!- DISEASE: Anemia, congenital dyserythropoietic, 1A (CDAN1A) CC [MIM:224120]: An autosomal recessive blood disorder characterized by CC morphological abnormalities of erythroblasts, ineffective CC erythropoiesis, macrocytic anemia and secondary hemochromatosis. It is CC occasionally associated with bone abnormalities, especially of the CC hands and feet (acrodysostosis), nail hypoplasia, and scoliosis. CC Ultrastructural features include internuclear chromatin bridges CC connecting some nearly completely separated erythroblasts and an CC abnormal appearance (spongy or Swiss-cheese appearance) of the CC heterochromatin in a high proportion of the erythroblasts. CC {ECO:0000269|PubMed:12434312}. Note=The disease is caused by variants CC affecting the gene represented in this entry. CC -!- SEQUENCE CAUTION: CC Sequence=AAH52568.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305}; CC Sequence=AAO14994.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305}; CC Sequence=AAQ88832.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AF525398; AAO14994.1; ALT_INIT; mRNA. DR EMBL; AC090510; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; BC001092; AAH01092.1; -; mRNA. DR EMBL; BC008333; AAH08333.1; -; mRNA. DR EMBL; BC008334; AAH08334.1; -; mRNA. DR EMBL; BC052568; AAH52568.1; ALT_INIT; mRNA. DR EMBL; BC066640; AAH66640.1; -; mRNA. DR EMBL; AY358467; AAQ88832.1; ALT_INIT; mRNA. DR CCDS; CCDS32209.1; -. [Q8IWY9-2] DR RefSeq; NP_612486.2; NM_138477.2. [Q8IWY9-2] DR AlphaFoldDB; Q8IWY9; -. DR BioGRID; 126963; 31. DR CORUM; Q8IWY9; -. DR DIP; DIP-24225N; -. DR IntAct; Q8IWY9; 6. DR MINT; Q8IWY9; -. DR STRING; 9606.ENSP00000348564; -. DR GlyGen; Q8IWY9; 1 site, 1 O-linked glycan (1 site). DR iPTMnet; Q8IWY9; -. DR PhosphoSitePlus; Q8IWY9; -. DR BioMuta; CDAN1; -. DR DMDM; 296439465; -. DR EPD; Q8IWY9; -. DR jPOST; Q8IWY9; -. DR MassIVE; Q8IWY9; -. DR MaxQB; Q8IWY9; -. DR PaxDb; 9606-ENSP00000348564; -. DR PeptideAtlas; Q8IWY9; -. DR ProteomicsDB; 70932; -. [Q8IWY9-2] DR ProteomicsDB; 70933; -. [Q8IWY9-1] DR Pumba; Q8IWY9; -. DR ABCD; Q8IWY9; 1 sequenced antibody. DR Antibodypedia; 42152; 150 antibodies from 20 providers. DR DNASU; 146059; -. DR Ensembl; ENST00000356231.4; ENSP00000348564.3; ENSG00000140326.13. [Q8IWY9-2] DR GeneID; 146059; -. DR KEGG; hsa:146059; -. DR MANE-Select; ENST00000356231.4; ENSP00000348564.3; NM_138477.4; NP_612486.2. DR UCSC; uc001zql.4; human. [Q8IWY9-2] DR AGR; HGNC:1713; -. DR CTD; 146059; -. DR DisGeNET; 146059; -. DR GeneCards; CDAN1; -. DR GeneReviews; CDAN1; -. DR HGNC; HGNC:1713; CDAN1. DR HPA; ENSG00000140326; Low tissue specificity. DR MalaCards; CDAN1; -. DR MIM; 224120; phenotype. DR MIM; 607465; gene. DR neXtProt; NX_Q8IWY9; -. DR OpenTargets; ENSG00000140326; -. DR Orphanet; 98869; Congenital dyserythropoietic anemia type I. DR PharmGKB; PA26249; -. DR VEuPathDB; HostDB:ENSG00000140326; -. DR eggNOG; ENOG502QPWR; Eukaryota. DR GeneTree; ENSGT00390000000491; -. DR HOGENOM; CLU_007378_0_0_1; -. DR InParanoid; Q8IWY9; -. DR OMA; CVVKDAQ; -. DR OrthoDB; 2909919at2759; -. DR PhylomeDB; Q8IWY9; -. DR TreeFam; TF328405; -. DR PathwayCommons; Q8IWY9; -. DR SignaLink; Q8IWY9; -. DR BioGRID-ORCS; 146059; 490 hits in 1178 CRISPR screens. DR ChiTaRS; CDAN1; human. DR GenomeRNAi; 146059; -. DR Pharos; Q8IWY9; Tbio. DR PRO; PR:Q8IWY9; -. DR Proteomes; UP000005640; Chromosome 15. DR RNAct; Q8IWY9; Protein. DR Bgee; ENSG00000140326; Expressed in ventricular zone and 158 other cell types or tissues. DR ExpressionAtlas; Q8IWY9; baseline and differential. DR GO; GO:0005737; C:cytoplasm; IDA:UniProtKB. DR GO; GO:0005829; C:cytosol; IDA:HPA. DR GO; GO:0012505; C:endomembrane system; IDA:MGI. DR GO; GO:0005634; C:nucleus; IDA:UniProtKB. DR GO; GO:0005886; C:plasma membrane; IDA:HPA. DR GO; GO:0006325; P:chromatin organization; IMP:MGI. DR GO; GO:0051170; P:import into nucleus; IMP:GO_Central. DR GO; GO:0008104; P:protein localization; IMP:MGI. DR InterPro; IPR040031; Codanin-1. DR InterPro; IPR028171; Codanin-1_C. DR PANTHER; PTHR28678; CODANIN-1; 1. DR PANTHER; PTHR28678:SF1; CODANIN-1; 1. DR Pfam; PF15296; Codanin-1_C; 1. DR Genevisible; Q8IWY9; HS. PE 1: Evidence at protein level; KW Acetylation; Alternative splicing; Congenital dyserythropoietic anemia; KW Cytoplasm; Disease variant; Hereditary hemolytic anemia; Membrane; Nucleus; KW Phosphoprotein; Reference proteome; Transmembrane; Transmembrane helix. FT INIT_MET 1 FT /note="Removed" FT /evidence="ECO:0007744|PubMed:22223895" FT CHAIN 2..1227 FT /note="Codanin-1" FT /id="PRO_0000089439" FT TRANSMEM 312..332 FT /note="Helical" FT /evidence="ECO:0000255" FT TRANSMEM 626..646 FT /note="Helical" FT /evidence="ECO:0000255" FT REGION 63..294 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 188..208 FT /note="Interaction with ASF1A/B" FT /evidence="ECO:0000269|PubMed:22407294" FT COMPBIAS 116..137 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 158..172 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 193..233 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 260..284 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 2 FT /note="N-acetylalanine" FT /evidence="ECO:0007744|PubMed:22223895" FT MOD_RES 71 FT /note="Phosphothreonine" FT /evidence="ECO:0007744|PubMed:23186163" FT MOD_RES 265 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT MOD_RES 285 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT VAR_SEQ 190 FT /note="G -> GETQLSCRRWVPRRLWGVSHSSSALRSGAPGCR (in isoform FT 1)" FT /evidence="ECO:0000303|PubMed:12434312" FT /id="VSP_027097" FT VAR_SEQ 226..258 FT /note="Missing (in isoform 1)" FT /evidence="ECO:0000303|PubMed:12434312" FT /id="VSP_027098" FT VARIANT 107 FT /note="Q -> L (in dbSNP:rs4265781)" FT /id="VAR_059602" FT VARIANT 596 FT /note="Q -> R (in dbSNP:rs12917189)" FT /id="VAR_056785" FT VARIANT 599 FT /note="N -> S (in CDAN1A; dbSNP:rs120074166)" FT /evidence="ECO:0000269|PubMed:12434312" FT /id="VAR_017218" FT VARIANT 672 FT /note="P -> L (in CDAN1A; dbSNP:rs120074167)" FT /evidence="ECO:0000269|PubMed:12434312" FT /id="VAR_017219" FT VARIANT 698 FT /note="E -> K (in CDAN1A)" FT /evidence="ECO:0000269|PubMed:12434312" FT /id="VAR_017220" FT VARIANT 714 FT /note="R -> W (in CDAN1A; partially disrupts ASF1 binding FT and loss the ability to arrest cells in S phase and inhibit FT DNA synthesis; dbSNP:rs80338696)" FT /evidence="ECO:0000269|PubMed:12434312, FT ECO:0000269|PubMed:22407294" FT /id="VAR_017221" FT VARIANT 868 FT /note="F -> I (in CDAN1A; dbSNP:rs120074168)" FT /evidence="ECO:0000269|PubMed:12434312" FT /id="VAR_017222" FT VARIANT 869 FT /note="V -> M (in CDAN1A; dbSNP:rs370895637)" FT /evidence="ECO:0000269|PubMed:12434312" FT /id="VAR_017223" FT VARIANT 891 FT /note="R -> C (in dbSNP:rs8023524)" FT /id="VAR_056786" FT VARIANT 1042 FT /note="R -> W (in CDAN1A; partially disrupts ASF1 binding; FT dbSNP:rs80338697)" FT /evidence="ECO:0000269|PubMed:12434312, FT ECO:0000269|PubMed:22407294" FT /id="VAR_017224" FT VARIANT 1043 FT /note="D -> V (in CDAN1A; dbSNP:rs80338698)" FT /evidence="ECO:0000269|PubMed:12434312" FT /id="VAR_017225" FT VARIANT 1130 FT /note="P -> L (in CDAN1A; dbSNP:rs80338699)" FT /evidence="ECO:0000269|PubMed:12434312" FT /id="VAR_017226" FT CONFLICT 31..32 FT /note="DN -> VT (in Ref. 1; AAO14994)" FT /evidence="ECO:0000305" FT CONFLICT 39 FT /note="L -> V (in Ref. 1; AAO14994)" FT /evidence="ECO:0000305" FT CONFLICT 42..45 FT /note="LRAL -> FGAW (in Ref. 1; AAO14994)" FT /evidence="ECO:0000305" FT CONFLICT 51..52 FT /note="PF -> RS (in Ref. 1; AAO14994)" FT /evidence="ECO:0000305" FT CONFLICT 55 FT /note="N -> T (in Ref. 1; AAO14994)" FT /evidence="ECO:0000305" FT CONFLICT 73 FT /note="A -> P (in Ref. 1; AAO14994)" FT /evidence="ECO:0000305" FT CONFLICT 76 FT /note="P -> R (in Ref. 1; AAO14994)" FT /evidence="ECO:0000305" FT CONFLICT 82 FT /note="L -> C (in Ref. 1; AAO14994)" FT /evidence="ECO:0000305" FT CONFLICT 93 FT /note="S -> T (in Ref. 1; AAO14994)" FT /evidence="ECO:0000305" FT CONFLICT 380 FT /note="V -> F (in Ref. 1; AAO14994)" FT /evidence="ECO:0000305" FT CONFLICT 421 FT /note="S -> F (in Ref. 3; AAH52568/AAH66640)" FT /evidence="ECO:0000305" FT CONFLICT 669 FT /note="Q -> P (in Ref. 4; AAQ88832)" FT /evidence="ECO:0000305" FT CONFLICT 726 FT /note="S -> C (in Ref. 1; AAO14994)" FT /evidence="ECO:0000305" FT CONFLICT 946 FT /note="R -> W (in Ref. 3; AAH01092/AAH08333/AAH08334)" FT /evidence="ECO:0000305" SQ SEQUENCE 1227 AA; 134120 MW; E2BC04ACD669DF6F CRC64; MAAVLESLLR EEVSVAAVVR WIARSTQGSE DNAGEAAALS SLRALRKEFV PFLLNFLREQ SSRVLPQGPP TPAKTPGASA ALPGRPGGPP RGSRGARSQL FPPTEAQSTA AEAPLARRGG RRRGPGPARE RGGRGLEEGV SGESLPGAGG RRLRGSGSPS RPSLTLSDPP NLSNLEEFPP VGSVPPGPTG TKPSRRINPT PVSEERSLSK PKTCFTSPPI SCVPSSQPSA LDTSPWGLGL PPGCRSLQEE REMLRKERSK QLQQSPTPTC PTPELGSPLP SRTGSLTDEP ADPARVSSRQ RLELVALVYS SCIAENLVPN LFLELFFVFQ LLTARRMVTA KDSDPELSPA VLDSLESPLF QSIHDCVFFA VQVLECHFQV LSNLDKGTLK LLAENERLLC FSPALQGRLR AAYEGSVAKV SLVMPPSTQA VSFQPETDNR ANFSSDRAFH TFKKQRDVFY EVLREWEDHH EEPGWDFEKG LGSRIRAMMG QLSAACSHSH FVRLFQKQLL QMCQSPGGAG GTVLGEAPDV LSMLGADKLG RLWRLQERLM APQSSGGPCP PPTFPGCQGF FRDFILSASS FQFNQHLMDS LSLKIQELNG LALPQHEPND EDGESDVDWQ GERKQFAVVL LSLRLLAKFL GFVAFLPYRG PEPPPTGELQ DSILALRSQV PPVLDVRTLL QRGLQARRAV LTVPWLVEFL SFADHVVPLL EYYRDIFTLL LRLHRSLVLS QESEGKMCFL NKLLLLAVLG WLFQIPTVPE DLFFLEEGPS YAFEVDTVAP EHGLDNAPVV DQQLLYTCCP YIGELRKLLA SWVSGSSGRS GGFMRKITPT TTTSLGAQPS QTSQGLQAQL AQAFFHNQPP SLRRTVEFVA ERIGSNCVKH IKATLVADLV RQAESLLQEQ LVTQGEEGGD PAQLLEILCS QLCPHGAQAL ALGREFCQRK SPGAVRALLP EETPAAVLSS AENIAVGLAT EKACAWLSAN ITALIRREVK AAVSRTLRAQ GPEPAARGER RGCSRACEHH APLPSHLISE IKDVLSLAVG PRDPDEGVSP EHLEQLLGQL GQTLRCRQFL CPPAEQHLAK CSVELASLLV ADQIPILGPP AQYRLERGQA RRLLHMLLSL WKEDFQGPVP LQLLLSPRNV GLLADTRPRE WDLLLFLLRE LVEKGLMGRM EIEACLGSLH QAQWPGDFAE ELATLSNLFL AEPHLPEPQL RACELVQPNR GTVLAQS //